@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0056: (2016-03-11 )
MKTTTQELKQYITRLFQLSNNETWECEALEEAAENILPERFINDSPLAHLTLETYTYYNNELHDLSIYPFLMYANNQLISVGYLNHFDMDFLYLTDTKNTIIDERHLLREGGTHHE
Atome Classification :
(20 SA)
---------------..-.......10......------..20...-.....30..-...-...40....--------....50.....-...60..----.---....-----.-----70........80...--.-....90....-----------....100.......110....--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------MK-T
T
T
Q
E
L
K
Q
Y
I
T
R
L
F
Q
------LSNNETW-
E
C
E
A
L
E
E
A
A
-
E
NI-
L
P
E
RFINDS--------P
L
A
H
L
T
L
E
T
Y
T
-
Y
YNNELH----D---
L
S
I
Y
-----
P
-----
F
L
M
Y
AN
N
Q
L
I
S
V
GYL--N-HFD
M
D
F
L
Y
L
T-----------DTKNT
I
I
D
E
R
H
L
L
REGGTHHE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
98.56
45%
-121
* C4 *
2KCD
-
?
A:
[1-120]
----------------
M
-
T
L
E
L
Q
L
K
H
Y
I
T
N
L
F
N
------
L
P
R
D
E
K
W
-
E
C
E
S
I
E
E
V
A
-
D
D
I
-
L
P
D
Q
Y
V
R
L
G
--------
P
L
S
N
K
I
L
Q
T
N
T
-
Y
Y
S
D
T
L
H
----
K
---
S
N
I
Y
-----
P
-----
F
I
L
Y
Y
Q
K
Q
L
I
A
I
G
F
I
--
D
E
N
H
D
M
D
F
L
Y
L
H
-----------
N
T
V
M
P
L
L
D
Q
R
Y
L
L
T
G
G
Q
L
E
H
H
HHHH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
95.07
48%
-132
- C4 -
2KCD
-
?
A:
[6-111]
----------------------
Q
L
K
H
Y
I
T
N
L
F
N
------
L
P
R
D
E
K
W
-
E
C
E
S
I
E
E
V
A
-
D
D
I
-
L
P
D
Q
Y
V
R
L
G
--------
P
L
S
N
K
I
L
Q
T
N
T
-
Y
Y
S
D
T
L
H
----
K
---
S
N
I
Y
-----
P
-----
F
I
L
Y
Y
Q
K
Q
L
I
A
I
G
F
I
D
E
N
-
H
-
D
M
D
F
L
Y
L
H
-----------
N
T
V
M
P
L
L
D
Q
R
Y
L
L
T
G
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
94.99
47%
-121
- C4 -
3WDG
-
?
B:
[1-110]
----------------
M
-
T
L
E
L
Q
L
K
H
Y
I
T
N
L
F
N
------
L
P
K
D
E
K
W
-
E
C
E
S
I
E
E
I
A
-
D
D
I
-
L
P
D
Q
Y
V
R
L
G
--------
A
L
S
N
K
I
L
Q
T
Y
T
-
Y
Y
S
D
T
L
H
----
E
---
S
N
I
Y
-----
P
-----
F
I
L
Y
Y
Q
K
Q
L
I
A
I
G
Y
I
--
D
E
N
H
D
M
D
F
L
Y
L
H
-----------
N
T
I
M
P
L
L
D
Q
R
Y
L
L
T
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
94.04
49%
-136
- C4 -
3WDG
-
?
B:
[6-110]
----------------------
Q
L
K
H
Y
I
T
N
L
F
N
------
L
P
K
D
E
K
W
-
E
C
E
S
I
E
E
I
A
-
D
D
I
-
L
P
D
Q
Y
V
R
L
G
--------
A
L
S
N
K
I
L
Q
T
Y
T
-
Y
Y
S
D
T
L
H
----
E
---
S
N
I
Y
-----
P
-----
F
I
L
Y
Y
Q
K
Q
L
I
A
I
G
Y
I
DE
N
-
H
-
D
M
D
F
L
Y
L
H
-----------
N
T
I
M
P
L
L
D
Q
R
Y
L
L
T
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
59.63
18%
-74
- C4 -
3PVI
2
T2P2_PROHU
A:
[2-157]
--------SHPD
L
N
K
L
L
-
E
L
W
P
H
I
Q
E
Y
Q
D
L
A
L
K
H
GINDI
F
Q
G
N
G
G
K
-
L
L
Q
V
L
L
I
T
G
-
L
T
V
-
L
P
G
R
E
G
N
D
A
V
D
NAG
Q
E
Y
E
L
K
S
I
N
I
D
L
T
K
-
G
F
S
T
H
H
H
MN
P
V
I
---
I
A
K
Y
-----
R
Q
V
P
W
I
F
A
I
Y
R
G
I
A
I
E
A
I
Y
R
L
--
E
-
P
K
D
L
E
F
Y
Y
D
K
W
E
R
K
W
Y
S
D
GH
K
D
I
N
N
P
K
I
P
V
K
Y
V
M
E
H
G
T
K
I
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
52.15
26%
-99
- C6 -
4AOX
3
?
A:
[329-419]
-------------------------------------------------
E
L
L
T
P
K
D
-
H
A
I
-
G
A
K
R
I
V
T
D
S
--------
G
Y
----
Y
E
T
Y
N
-
R
D
N
V
E
L
V
----
D
---
L
R
S
T
-----
P
-----
I
V
G
M
D
E
T
G
I
V
T
T
G
----
A
-
H
Y
D
L
D
M
I
V
L
A
T
G
F
--------
D
A
M
T
G
S
L
D
K
L
E
I
V
G
R
G
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
51.15
26%
-90
- C6 -
4AOS
3
?
A:
[329-418]
-------------------------------------------------
E
L
L
T
P
K
D
-
H
A
I
-
G
A
K
R
I
V
T
D
S
--------
G
Y
----
Y
E
T
Y
N
-
R
D
N
V
E
L
V
----
D
---
L
R
S
T
-----
P
-----
I
V
G
M
D
E
T
G
I
V
T
T
G
----
A
-
H
Y
D
L
D
M
I
V
L
A
T
G
F
--------
D
A
M
T
G
S
L
D
K
L
E
I
V
G
R
G
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
50.05
26%
-99
- C6 -
4AP1
2
?
A:
[329-418]
-------------------------------------------------
E
L
L
T
P
K
D
-
H
A
I
-
G
A
K
R
I
V
T
D
S
--------
G
Y
----
Y
E
T
Y
N
-
R
D
N
V
E
L
V
----
D
---
L
R
S
T
-----
P
-----
I
V
G
M
D
E
T
G
I
V
T
T
G
----
A
-
H
Y
D
L
D
M
I
V
L
A
T
G
F
--------
D
A
M
T
G
S
L
D
K
L
E
I
V
G
R
G
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
47.44
15%
-52
- C4 -
2L57
-
?
A:
[1-126]
MSLEGIKQINFQSIN
V
V
-
E
N
L
E
E
A
K
E
G
I
P
T
I
I
M
------
F
K
T
D
T
C
P
-
Y
C
V
E
M
Q
K
E
L
-
S
Y
V
-
S
K
E
R
---
E
G
--------
K
F
N
I
Y
Y
A
R
L
E
E
-
E
K
N
I
D
L
A
----
Y
K
Y
D
A
N
I
V
-----
P
-----
T
T
V
F
L
D
K
E
G
--------
N
-
K
F
Y
V
H
Q
G
L
M
R
-----------
K
N
N
I
E
T
I
L
N
S
L
G
V
K
E
G
H
H
H
H
H
H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
47.12
24%
-61
- C1 -
4Q9T
-
?
A:
[12-446]
---------------
T
K
-
I
L
T
E
T
E
K
Y
S
V
T
K
L
--------
S
T
D
L
S
F
L
-
P
F
E
G
L
V
D
T
A
-----
L
Q
K
A
L
V
N
D
----------
L
D
H
I
Y
I
W
N
Y
N
-
S
I
Q
K
D
T
P
----
I
---
C
K
I
S
LHS
S
P
P
-----
I
C
L
F
T
S
S
-
I
N
G
I
C
I
I
--
N
-
K
K
N
S
Q
F
L
Y
F
E
-----------
D
I
-
S
T
I
N
N
L
A
H
V
L
D
L
K
L
K
D
N
E
NIT
S
T
I
N
CEPS
G
I
I
I
A
T
SLG
R
V
L
F
I
T
IKDSTGK
P
K
L
E
LKQQLIKPQNSFFFRNLDSSKEII
S
L
K
K
G
P
I
V
G
KG
E
R
L
L
Y
I
T
T
RGG
S
L
Q
I
W
Q
L
S
IN
S
K
S
F
K
R
L
E
I
N
I
Y
E
H
V
L
D
S
L
QDLYPFAHGT
L
A
F
L
D
SHPIYSDTSS
A
H
L
T
L
A
S
I
S
N
GN
E
I
Y
Y
L
M
I
T
V
I
L
D
EKTN
S
F
Q
I
F
S
I
Y
K
LNT
Y
F
T
K
STVDLNH
K
P
Q
L
F
I
PNALDSIVSP
T
L
S
V
Y
V
L
F
NN
A
V
V
M
T
Q
I
S
SKLDSSFPLRRK
W
E
D
I
I
R
F
NKDVEII
G
S
G
Y
S
TD
S
I
Y
V
I
C
KDM
G
V
L
K
I
A
S
H
11
PsiBlast_PDB
45.50
28%
-91
* C6 *
4AP3
3
?
A:
[351-416]
-------------------------------------------------------------------------------------
E
T
Y
N
-
R
D
N
V
E
L
V
----
D
---
L
R
S
T
-----
P
-----
I
V
G
M
D
E
T
G
I
V
T
T
G
----
A
-
H
Y
D
L
D
M
I
V
L
A
T
G
F
--------
D
A
M
T
G
S
L
D
K
L
E
I
V
G
R
G
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
40.36
23%
-13
- C4 -
2KO6
-
?
A:
[1-89]
---------------
M
K
C
K
R
L
N
E
V
I
E
L
L
Q
P
A
W
Q
------
K
E
P
D
F
N
L
-
L
Q
F
L
Q
K
L
A
K
-
E
S
G
-------
F
D
G
--------
E
L
A
D
L
T
D
D
I
L
I
-
Y
H
L
K
M
R
D
----
S
----------------------
A
K
D
A
V
I
P
-
G
L
Q
--
K
-
D
Y
E
E
D
-----------------------
F
K
T
A
L
L
R
A
R
G
V
I
K
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
33.40
12%
-33
- C2 -
3MHS
1
SGF73_YEAST
E:
[5-95]
----------------
D
-
A
E
I
K
G
I
K
P
K
V
I
E
E
Y
S
------
G
P
S
N
D
S
W
-
K
-
S
L
M
S
S
A
K
-
D
T
P
-
L
Q
Y
D
H
M
N
R
E
--------
S
L
K
K
Y
F
N
P
N
A
Q
-
L
I
E
D
P
L
D
----
K
---
P
I
Q
Y
-----
R
-----
V
C
E
K
C
G
K
P
L
A
L
T
A
I
V
--
D
-
H
L
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
33.14
17%
-9
- C4 -
2PQ4
-
NAPA_ECOLI
B:
[1-35]
-------------------------------
M
K
------
L
S
R
R
S
F
M
-
K
A
N
A
V
A
A
A
A
-
A
A
A
G
L
S
V
P
G
V
A
R
A
--------
V
V
G
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
29.72
17%
8
- C5 -
1JJ2
-
RL10_HALMA
G:
[12-73]
------------------------------------------
I
P
E
W
-
K
Q
E
E
V
D
A
I
V
-
E
M
I
-
E
S
R
N
T
L
L
E
R
--------
A
L
D
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
27.66
17%
-77
- C5 -
1NVP
-
T2AG_HUMAN
D:
[15-68]
------------------------------------------------
Q
E
S
L
D
E
L
I
Q
S
Q
Q
-
I
T
P
Q
--------------
L
A
L
Q
V
L
L
Q
F
D
K
A
I
N
A
A
L
A
----
Q
---
R
-
V
R
-----
N
-----
R
V
-
N
F
R
G
S
L
N
T
Y
R
F
C
--
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
27.46
23%
-83
- C5 -
1NH2
-
T2AG_YEAST
D:
[19-85]
------------------------------------------------
V
D
A
L
D
T
L
I
S
D
G
R
-
I
E
A
S
--------------
L
A
M
R
V
L
E
T
F
D
K
V
V
A
E
T
L
K
----
D
----
N
T
Q
-----
S
-----
K
L
-
T
V
K
G
N
L
D
T
Y
G
F
C
--
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
27.27
24%
-33
- C5 -
1T5O
-
MTNA_ARCFU
A:
[18-51]
-------------------------------
T
K
------
L
P
E
K
L
E
V
I
E
C
R
N
V
E
E
L
A
-
D
A
I
-
K
-
K
L
A
V
R
G
A
--------
P
A
L
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
27.07
22%
-33
- C5 -
1ZSQ
-
MTMR2_HUMAN
A:
[450-506]
--------------------------------------------
T
F
-
L
C
N
S
E
Q
Q
R
G
-
K
E
N
-
L
P
K
R
------------------
T
V
S
L
W
S
-
Y
I
N
S
Q
L
E
----
D
---
F
T
N
P
-----
L
-----
Y
G
S
Y
S
N
H
V
L
Y
P
V
A
S
M
--
R
-
H
L
E
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
26.98
22%
-29
- C5 -
1LW3
-
MTMR2_HUMAN
A:
[522-578]
--------------------------------------------
T
F
-
L
C
N
S
E
Q
Q
R
G
-
K
E
N
-
L
P
K
R
------------------
T
V
S
L
W
S
-
Y
I
N
S
Q
L
E
----
D
---
F
T
N
P
-----
L
-----
Y
G
S
Y
S
N
H
V
L
Y
P
V
A
S
M
--
R
-
H
L
E
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------