@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0063: (2016-03-11 )
MVPTVVIDLVDQLKGNYSIKLILEVLNIPKSTYYRWKNKTYKNDTVTQKVIELCEANHYTYGYRKITALINQCYTSPINHKRVQRMMQKHHLNCRVRPKKTTRIGKPYYKTDNLLQR
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------.........10..-.-.--.---...20.-------------.......30........40..-----------------......50........----60........70...----..-----.-----..80........90....-....100.......110.....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------MV
P
T
V
V
I
D
L
V
D
Q
L-K-G--N---
Y
S
I
K
L
I
-------------
L
E
V
LNIPKS
T
Y
Y
R
WKNKTYKN-----------------
D
T
V
T
Q
K
V
I
E
L
CEANHY----T
Y
G
Y
R
K
I
T
A
L
I
N
Q
CY----TS-----P-----I
N
H
K
R
V
Q
R
M
M
Q
K
HHL
N
C
R
-VRPKKTTRIGKPYYK
T
D
N
L
LQR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
71.51
13%
-119
- C1 -
1K78
-
PAX5_HUMAN
A:
[34-142]
---------------------------------------------------------------------------------
P
D
V
V
R
Q
R
I
V
E
L
A
-
H
-
Q
--
G
---
V
R
P
C
D
I
-------------
S
R
Q
L
R
V
S
H
G
C
V
S
K
I
L
G
R
Y
Y
E
T
GSIKPGV
I
G
G
S
K
P
KVAT
P
K
V
V
E
K
I
A
E
Y
K
R
Q
N
-
P
----
T
M
F
A
W
E
I
R
D
R
L
L
A
E
R
VCDN
D
T
-----
V
-----
P
S
V
S
S
I
N
R
I
I
R
T
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
70.11
18%
-90
- C1 -
2LVS
-
?
A:
[15-104]
--------------------------------------------------------------------------------------------
Y
-
K
-
D
--
G
---
V
P
V
K
E
I
-------------
A
K
R
S
N
N
S
M
S
T
V
Y
K
A
L
E
K
L
E
A
M
GRIKRRK
G
R
Y
R
Q
HRRLT
E
E
E
L
A
T
I
R
E
L
Y
L
K
-------
G
A
T
V
Y
E
----
I
A
R
------
Q
L
-----
G
-----
R
P
E
S
T
I
Y
Y
A
L
K
K
L
G
L
K
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
68.74
8%
-118
- C1 -
1PDN
2
PRD_DROME
C:
[19-124]
---------------------------------------------------------------------------------
P
N
N
I
R
L
K
I
V
E
M
A
-
A
-
D
--
G
---
I
R
P
C
V
I
-------------
S
R
Q
L
R
V
S
H
G
C
V
S
K
I
L
N
R
Y
Q
E
T
GSIRPGVIGGSKPRIAT
P
E
I
E
N
R
I
E
E
Y
K
R
S
S
-
P
----
G
M
F
S
W
E
I
R
E
K
L
I
R
E
-----
G
V
-----
C
DRSTA
P
S
V
S
A
I
S
R
L
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
66.93
27%
-44
- C4 -
4LO0
-
?
C:
[12-91]
------------------------------------------------------------------------------------------------
G
--
N
---
Y
N
I
K
S
I
FSGS
L
Y
L
N
P
V
SK
S
L
T
F
S
N
E
S
S
A
N
N
Q
K
W
-
N
V
E
Y
M
A
-----------------
E
N
R
C
F
K
I
S
N
V
A
E
P
N
K
Y
L
S
Y
D
N
F
G
F
I
S
L
D
S
L
S
N
R
C
Y
----
W
F
-----
P
-----
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
66.70
27%
-44
- C4 -
4LO7
-
?
C:
[12-91]
------------------------------------------------------------------------------------------------
G
--
N
---
Y
N
I
K
S
I
FSGS
L
Y
L
N
P
V
SK
S
L
T
F
S
N
E
S
S
A
N
N
Q
K
W
-
N
V
E
Y
M
A
-----------------
E
N
R
C
F
K
I
S
N
V
A
E
P
N
K
Y
L
S
Y
D
N
F
G
F
I
S
L
D
S
L
S
N
R
C
Y
----
W
F
-----
P
-----
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
66.14
27%
-45
- C4 -
4QD2
-
?
B:
[12-91]
------------------------------------------------------------------------------------------------
G
--
N
---
Y
N
I
K
S
I
FSGS
L
Y
L
N
P
V
SK
S
L
T
F
S
N
E
S
S
A
N
N
Q
K
W
-
N
V
E
Y
M
A
-----------------
E
N
R
C
F
K
I
S
N
V
A
E
P
N
K
Y
LSYD
N
F
G
F
I
S
L
D
S
L
S
N
R
C
Y
----
W
F
-----
P
-----
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
65.85
27%
-44
- C4 -
4LO2
-
?
C:
[12-91]
------------------------------------------------------------------------------------------------
G
--
N
---
Y
N
I
K
S
I
FSGSLYLNPVSKS
L
T
F
S
N
E
S
S
A
N
N
Q
K
W
-
N
V
E
Y
M
A
-----------------
E
N
R
C
F
K
I
S
N
V
A
E
P
N
K
Y
LSYD
N
F
G
F
I
S
L
D
S
L
S
N
R
C
Y
----
W
F
-----
P
-----
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
65.72
27%
-48
- C4 -
4LO3
-
?
C:
[12-91]
------------------------------------------------------------------------------------------------
G
--
N
---
Y
N
I
K
S
I
FSGS
L
Y
L
N
P
V
SK
S
L
T
F
S
N
E
S
S
A
N
N
Q
K
W
-
N
V
E
Y
M
A
-----------------
E
N
R
C
F
K
I
S
N
V
A
E
P
N
K
Y
LSYD
N
F
G
F
I
S
L
D
S
L
S
N
R
C
Y
----
W
F
-----
P
-----
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
64.41
27%
-42
* C4 *
4LO1
-
?
C:
[12-91]
------------------------------------------------------------------------------------------------
G
--
N
---
Y
N
I
K
S
I
FSGS
L
Y
L
N
P
V
SK
S
L
T
F
S
N
E
S
S
A
N
N
Q
K
W
-
N
V
E
Y
M
A
-----------------
E
N
R
C
F
K
I
S
N
V
A
E
P
N
K
Y
L
S
Y
D
N
F
G
F
I
S
L
D
S
L
S
N
R
C
Y
----
W
F
-----
P
-----
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
63.66
27%
-47
- C4 -
5BP5
-
?
C:
[12-91]
------------------------------------------------------------------------------------------------
G
--
N
---
Y
N
I
K
S
I
FSGS
L
Y
L
N
P
V
SK
S
L
T
F
S
N
E
S
S
A
N
N
Q
K
W
-
N
V
E
Y
M
A
-----------------
E
N
R
C
F
K
I
S
N
V
A
E
P
N
K
Y
LSYD
N
F
G
F
I
S
L
D
S
L
S
N
R
C
Y
----
W
F
-----
P
-----
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
63.13
27%
-42
- C4 -
4LO8
-
?
B:
[12-91]
------------------------------------------------------------------------------------------------
G
--
N
---
Y
N
I
K
S
I
FSGS
L
Y
L
N
P
V
SK
S
L
T
F
S
N
E
S
S
A
N
N
Q
K
W
-
N
V
E
Y
M
A
-----------------
E
N
R
C
F
K
I
S
N
V
A
E
P
N
K
Y
L
S
Y
D
N
F
G
F
I
S
L
D
S
L
S
N
R
C
Y
----
W
F
-----
P
-----
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
61.31
11%
-97
- C1 -
1U78
-
TC3A_CAEEL
A:
[8-104]
---------------------------------------------------------------------------------
S
D
T
E
R
A
Q
L
D
V
M
K
-
L
-
L
--
N
---
V
S
L
H
E
M
-------------
S
R
K
I
S
R
S
R
H
C
I
R
V
Y
L
K
D
P
V
S
Y
GTSKRAPRRKALS----
V
R
D
E
R
N
V
I
R
A
A
S
-
N
-
S
----
C
K
T
A
R
D
I
----
R
N
E
L
----
Q
L
-----
S
-----
A
S
K
R
T
I
L
N
V
I
K
R
S
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
59.09
13%
-84
- C1 -
2K27
-
PAX8_HUMAN
A:
[27-141]
---------------------------------------------------------------------------------
P
E
V
V
R
Q
R
I
V
D
L
A
-
H
-
Q
--
G
---
V
R
P
C
D
I
-------------
S
R
Q
L
R
V
S
H
G
C
V
S
K
I
L
G
R
Y
Y
E
T
GSIRP
G
V
I
G
G
S
K
P
KVAT
P
K
V
V
E
K
I
G
D
Y
K
R
Q
N
-
P
----
T
M
F
A
W
E
I
R
D
R
L
L
A
E
-----
G
V
CDNDT
V
-----
P
S
V
S
S
I
N
R
I
I
R
T
K
V
Q
Q
P
F
-
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
58.81
13%
-105
- C1 -
2GLO
2
?
A:
[8-50]
----------------------------------------------------------------------------------
P
H
F
K
L
Q
V
L
E
S
Y
-
R
N
D
--
N
DCK
G
N
Q
R
A
T
-------------
A
R
K
Y
N
I
H
R
R
Q
I
Q
K
W
L
Q
C
E
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
58.44
16%
-122
- C1 -
2COB
-
A:
[17-55]
-----------------------------------------------------------------------------------
E
I
L
E
E
A
I
S
V
V
M
S
-
G
--
K
---
M
S
V
S
K
A
-------------
Q
S
I
Y
G
I
P
H
S
T
L
E
Y
K
V
K
E
R
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
58.33
22%
-95
- C1 -
2JN6
-
?
A:
[7-49]
---------------------------------------------------------------------------------
S
E
E
F
K
R
D
A
V
A
L
Y
-
E
-
N
SD
G
---
A
S
L
Q
Q
I
-------------
A
N
D
L
G
I
N
R
V
T
L
K
N
W
I
I
K
Y
G
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
57.64
8%
-54
- C2 -
2H2M
-
COMD1_HUMAN
A:
[1-108]
--------------------------------------------------------------------------------
M
A
A
-------
G
E
L
-
E
-
G
--
G
---
K
P
L
S
G
L
-------------
L
N
A
L
--
A
Q
D
T
F
H
--
G
Y
P
G
I
T
E
-----------------
E
L
L
R
S
Q
L
Y
P
E
V
P
P
E
E
F
----
R
P
F
L
A
K
M
R
G
I
L
K
S
I
A
----
S
A
-----
D
-----
M
D
F
N
Q
L
E
A
F
L
T
A
Q
T
K
K
Q
G
G
I
T
S
D
Q
A
A
V
I
S
K
F
W
K
S
H
K
T
K
I
R
E
S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
57.07
15%
-99
* C1 *
1HLV
2
CENPB_HUMAN
A:
[9-50]
---------------------------------------------------------------------------------
T
F
R
E
K
S
R
I
I
Q
E
V
-
E
-
E
N
P
D
---
L
R
K
G
E
I
-------------
A
R
R
F
N
I
P
P
S
T
L
S
T
I
L
K
N
K
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
56.54
12%
-53
* C2 *
1L5J
2
ACNB_ECOLI
A:
[1-862]
M
L
E
E
Y
R
K
H
V
A
E
R
A
A
E
GIAPKPLD
A
N
Q
M
A
A
L
V
E
L
L
K
N
PPAGE
E
E
F
L
L
D
L
L
T
NRVPPGVD
E
A
A
Y
V
K
A
G
F
L
A
A
I
A
K
GEAKSPL
L
T
P
E
K
A
I
E
L
L
G
T
M
-
Q
-
G
--
G
---
Y
N
I
H
P
L
-------------
I
D
A
L
D
---------------
D
-----------------
A
K
L
A
P
I
A
A
K
A
L
S
---------------------------
H
T
-----
L
-----
L
M
F
D
N
F
Y
D
V
E
E
K
A
K
A
G
-----
N
E
Y
A
K
Q
V
M
Q
S
W
A
D
A
E
W
F
L
N
R
PALAE
K
L
T
V
T
V
FKVTGETNTDDLSPAPDAWSRPD
I
P
L
H
A
L
A
MLKNAREGIEPDQPGVVGP
I
K
Q
I
E
A
L
Q
Q
KG
F
P
L
A
Y
V
G
DVVGTGSSRK
S
A
T
N
S
V
L
W
F
M
G
D
D
I
PHVPN
K
R
G
G
G
L
C
L
G
GKIA
P
I
F
F
N
T
M
E
D
A
G
A
L
P
I
E
V
DVSNLNMG
D
V
I
D
V
Y
PYKG
E
V
R
N
HETGELL
A
T
F
E
L
KTDV
L
I
D
E
V
R
A
GG
R
I
P
L
I
I
G
R
G
L
T
T
K
A
R
E
A
L
GLPHSDV
F
R
Q
A
K
DVAESD
R
G
F
S
L
A
Q
K
M
V
G
R
A
C
GVKGIRPG
A
Y
C
E
P
K
M
T
S
V
G
S
Q
DTT
G
P
M
T
R
D
E
L
K
D
L
ACLGFSAD
L
V
M
Q
S
FCHTAAYPK
P
V
D
V
N
T
H
H
T
L
P
D
F
I
M
N
R
G
G
V
S
L
R
PGDGV
I
H
S
W
L
N
R
M
LLPD
T
V
G
T
G
GDSHTRFP
I
G
I
S
F
P
A
G
S
G
L
V
A
F
A
A
A
TG
V
M
P
L
D
M
P
E
S
V
L
V
R
F
K
G
K
M
Q
P
GIT
L
R
D
L
V
H
A
I
P
L
Y
A
I
K
Q
GLLTVEKKGKKNIFSG
R
I
L
E
I
E
GLPDLK
V
E
Q
A
F
E
L
T
D
A
SAERSAA
G
C
T
I
K
L
N
K
E
P
I
I
E
Y
L
N
S
N
I
V
L
L
K
W
M
I
A
E
GYGD
R
R
T
L
E
R
R
I
Q
G
M
E
K
W
L
A
N
P
E
L
L
E
A
D
ADAEYA
A
V
I
D
I
D
LADIK
E
P
I
L
C
A
P
NDPDDARPLSAVQGEKID
E
V
F
I
G
SCMTN
I
G
H
F
R
A
A
G
K
L
L
D
A
H
KGQLP
T
R
L
W
V
A
P
PT
R
M
D
A
A
Q
L
T
E
E
G
Y
Y
S
V
F
G
K
S
G
A
R
I
E
I
PGCSLCMGNQARVADG
A
T
V
V
S
TSTRNFPNRLGTG
A
N
V
F
L
A
S
A
E
L
A
A
V
A
A
L
I
GKLPT
P
E
E
Y
Q
T
Y
V
A
Q
V
D
K
T
AVDTYRYLNFNQL
S
Q
Y
T
E
K
A
D
G
VIFQ
38
HHSearch
54.79
16%
-90
- C1 -
2ELH
-
DAN_DROME
A:
[27-63]
------------------------------------------------------------------------------------
D
K
I
H
A
I
Q
R
I
-
H
-
D
--
G
---
E
S
K
A
S
V
-------------
A
R
D
I
G
V
P
E
S
T
L
R
G
W
C
K
N
E
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------