@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0065: (2016-03-11 )
MTQGWWFPVMASAFLIFTIVIMFIAGTGQYGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNKGMISDTILHFSSSIVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNVRYSHWLRFVWPVVAFVLIFGGGLLITQVLIYS
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30...-----.....40........50.....--------...60.......---------.70.......--.80.....---.-.------.90...-.....100..---..--.....----110---..-------......-----.120....--..--.130...-....140.......150---.....----....160-...--....170----........----180.......190..---------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------MTQGW
W
F
P
V
M
A
S
A
F
L
I
F
T
I
V
I
M
F
IAGTGQYGLGE-----KG
T
V
D
A
F
V
N
G
A
S
S
L
V
G
V
S
L
I
I
G
--------
L
A
R
G
I
N
L
V
LNKG---------M
I
S
D
T
I
L
H
F
S
--
S
S
I
V
Q
HMS---G-
P
------
L
F
I
I
V
L
-
L
F
I
F
F
C
--
L
G
---
F
I--VPSSS----
G
-----
L
A
-------
V
L
SMPI-----FAP
L
A
DTV--GI--
P
R
F
V
I
V
T
-
T
YQFG
Q
Y
A
M
L
F
LAP
T
-----
G
L
V
M
A
----
T
L
Q
M
L
N
V
-
R
Y
S
--
H
W
L
R
F
V
-----
W
P
V
V
A
F
V
L
----
I
FG
G
G
L
L
I
T
Q
V
LIYS---------------------------------------------------------------------------------------------------------------------
27
Fugue
78.16
20%
-152
- C3 -
4L9P
11
?
B:
[68-519]
VHPGIP
A
L
F
R
E
PPLIHDLLST
E
T
T
E
L
Q
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L
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GIHNSQKGPFNKYGIPALQ
R
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D
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Y
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L
EDYPASFVALDAS
R
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A
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A
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GEDVTRF
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QNST
G
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GGHGQMSH
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Y
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G
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--
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---------
A
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---
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---
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----
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-------
A
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A
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-----
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A
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--
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-
Y
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Q
YAPEG
G
F
S
G
R
----
T
N
K
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D
G
-
C
Y
S
--
H
W
V
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N
C
-----
W
P
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A
A
L
D
GTQ
P
L
A
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P
K
R
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S
V
G
N
L
Y
S
R
E
G
L
T
R
Y
I
L
SCCQCKL
G
G
L
R
DKPG
K
H
P
D
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Y
H
T
C
Y
A
L
T
G
L
S
T
V
Q
Y
Y
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Y
C
T
DSSVSSKDDF
S
S
A
F
S
W
K
H
D
P
NFASDGQGSDIGVFTENDRLVPFHPIFVIP
H
K
S
A
E
D
I
R
V
W
F
E
N
QSFDL
22
Fugue
75.90
19%
-166
- C6 -
4J1V
3
MOB1A_HUMAN
A:
[9-180]
----------------------------------------------------------------------------------------------------------------------------------------------------
L
R
Q
A
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E
-------------------
G
E
-----
D
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--------
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-----
T
---------
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--
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---
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-
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------
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---
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D
----
D
-----
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-------
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I
-----
G
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P
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N
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--
M
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--
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A
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T
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-
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-
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F
-----
D
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M
Q
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Q--
E
E
A
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N
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-
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F
K
--
H
F
I
F
F
V
--------
Q
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N
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----
I
D
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A
P
L
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E
L
I
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K
L
G-------------------------------------------------------------------------------------------------------------------
19
Fugue
75.65
13%
-208
- C4 -
1GEQ
-
TRPA_PYRFU
A:
[1-248]
------------------------------------------------------------------------------------------------------------------------------------------------------
M
F
K
------
D
G
S
L
I
P
Y
L
T
A
G
D
P
D
K
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-----
N
-
F
L
L
A
L
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E
Y
-
A
G
A
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DPIADG
K
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S
H
Y
R
A
L
K
N
G
---------
F
K
L
R
E
A
F
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I
V
--
K
E
F
R
R
H
S
----
S
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P
------
I
V
L
M
T
Y
-
Y
N
P
I
Y
R
--
A
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R
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--
A
E
A
K
A
S
GVD
G
-----
I
L
-------
V
V
D
L
P
V
FH
A
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E
F
T
E
I
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R
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E
--
G
I
--
K
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F
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A
A
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N
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M
T
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-----
G
F
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Y
L
V
S
LY---
E
I
P
K
-
T
A
Y
--
D
L
L
R
R
A
-----
K
R
I
C
R
N
K
V
----
A
V
G
F
G
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K
R
E
H
V
V
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L
K
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GAN
G
V
V
V
G
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A
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G
E
KGREA
T
E
F
L
K
K
K
V
E
E
L
L
GI------------------------------------------------------------------------------
26
Fugue
73.22
15%
-139
- C4 -
4MVD
1
PCY1A_RAT
A:
[60-315]
--------------------------------------------------------------------------------------------------------------------------------GLRQPAPFSDE
I
E
V
D
F
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K
P
Y
V
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M
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E
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A
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I
F
D
L
F
H
-----
S
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A
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A
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N
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N
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Y
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I
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--------
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F
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VMN
E
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C
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Y
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--
D
E
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R
N
A
P
WTL
T
-
P
------
E
F
L
A
E
H
-
R
I
D
F
V
A
--
H
D
---
D
I
--
P
Y
S
S
A
----
G
SDDVY
K
H
-------
I
K
E
A
G
M
-----
F
A
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T
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R
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E
--
G
I
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I
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I
-
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V
Y
A
R
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N
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R
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-----
A
K
E
L
N
----
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-
K
Y
H
--
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R
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-----
K
V
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K
K
V
K
D
----
V
E
E
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S
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E
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K
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I
D
L
IWEEK
S
R
E
F
I
G
S
F
L
E
M
F
GP----------------------------------------------------------------------------------------------
25
Fugue
70.54
13%
-157
* C4 *
3P2E
2
NPMA_ECOLX
A:
[2-216]
--------------------------------------------------------------------------------------------------------------------------------------LILKGT
K
T
V
D
L
S
K
D
E
L
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E
I
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Q
F
D
---
R
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R
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-
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-----
L
A
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F
Y
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L
F
D
--------
I
S
K
K
I
I
K
K
P
S
K
G
---------
G
L
S
N
V
V
F
V
I
A
A
A
E
S
L
P
F
E
L
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---
N
-
I
---------
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-
I
S
I
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--
W
G
---
T
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--
L
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V
I
----
K
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N
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N
-----
V
A
D
L
A
K
K
E
--
A
H
--
F
E
F
V
T
T
Y
-
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D
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A
Y
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L
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Q
Y
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A
-----
E
L
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N
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----
G
F
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-
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E
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D
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E
Y
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Q
F
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N
S
L
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A
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R
L
----
A
F
G
R
K
R
S
F
F
R
V
S
G
H
V
---------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
68.94
23%
-133
- C5 -
4R1I
-
?
A:
[320-469]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
L
F
A
L
P
G
I
V
Y
G
R
I
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R
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L
R
G
E
-----
R
E
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V
N
A
M
A
E
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M
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G
L
Y
L
V
I
I
F
--------
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A
A
Q
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V
A
F
F
N
W
T
---------
N
I
G
Q
Y
I
A
V
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G
--
A
V
F
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E
V
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---
L
-
A
------
G
S
V
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-
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---
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A
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-------
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--
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-
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I
I
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P
M
MSYF-
G
L
I
M
A
----
T
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
66.66
15%
-101
* C6 *
2LSE
-
?
A:
[1-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
E
E
R
K
K
L
L
E
K
-----
L
E
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I
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E
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G
A
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E
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D
E
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---------
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F
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--
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PNA
V
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E
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E
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I
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K
L
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--
A
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---
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----
Y
-----
L
E
-------
H
H
H
H
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
64.97
11%
-153
- C4 -
1UTH
12
?
A:
[94-312]
-----------------------------------------------------------------------------------------------------------------------------------------TRNSFDP
F
A
S
T
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T
F
N
L
A
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F
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--------
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A
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L
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R
--
Y
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M
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D
---
H
-
P
------
S
A
K
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P
M
S
L
K
Q
F
S
E
--
L
E
---
H
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--
G
V
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A
L
----
N
-----
T
----------
G
H
G
E
-----
V
D
G
L
L
E
R
A
--
G
I
--
K
R
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M
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L
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-
V
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I
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-----
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A
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----
P
Q
R
F
A
V
R
C
E
V
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--
F
G
L
T
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S
PHPAK
L
P
D
I
A
I
N
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----
F
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A
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Y
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R
D
P
G
N
M
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Q
L
F
V
E
L
FSEAHHH-------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
54.63
28%
-70
- C5 -
1JB0
4
PSAB_THEEB
B:
[387-463]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
F
A
H
G
A
---------
I
F
--------
L
V
R
D
Y
D
P
A
Q
N
K
G
---------
N
V
L
D
R
V
L
Q
H
K
--
E
A
I
I
S
H
L
S
--------------
W
V
S
L
-
F
L
G
F
H
T
--
L
G
---
L
Y
--
V
H
N
D
V
----
V
-----
V
A
F
GTPEKQ
I
L
I
E
P
V
-----
F
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
54.60
28%
-70
- C5 -
3PCQ
2
PSAB_THEEB
B:
[387-463]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
F
A
H
G
A
---------
I
F
--------
L
V
R
D
Y
D
P
A
Q
N
K
G
---------
N
V
L
D
R
V
L
Q
H
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--
E
A
I
I
S
H
L
S
--------------
W
V
S
L
-
F
L
G
F
H
T
--
L
G
---
L
Y
--
V
H
N
D
V
----
V
-----
V
A
F
GTPEKQ
I
L
I
E
P
V
-----
F
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
54.19
28%
-70
- C5 -
4FE1
-
PSAB_THEEB
B:
[387-463]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
F
A
H
G
A
---------
I
F
--------
L
V
R
D
Y
D
P
A
Q
N
K
G
---------
N
V
L
D
R
V
L
Q
H
K
--
E
A
I
I
S
H
L
S
--------------
W
V
S
L
-
F
L
G
F
H
T
--
L
G
---
L
Y
--
V
H
N
D
V
----
V
-----
V
A
F
GTPEKQ
I
L
I
E
P
V
-----
F
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
45.59
26%
-133
- C5 -
4MBG
3
?
B:
[332-390]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
P
R
Y
M
N
I
A
-
T
L
L
P
W
L
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Y
A
P
E
G
-----
G
F
S
G
R
----
T
N
K
L
V
D
G
-
C
Y
S
--
H
W
V
G
N
C
-----
W
P
L
V
Q
A
A
L
----------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
44.85
26%
-129
- C5 -
4LNG
3
?
B:
[332-388]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
P
R
Y
M
N
I
A
-
T
L
L
P
W
L
S
A
R
Q
Y
A
P
E
G
-----
G
F
S
G
R
----
T
N
K
L
V
D
G
-
C
Y
S
--
H
W
V
G
N
C
-----
W
P
L
V
Q
A
A
L
----------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
44.29
26%
-129
- C5 -
4LNB
4
?
B:
[332-388]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
P
R
Y
M
N
I
A
-
T
L
L
P
W
L
S
A
R
Q
Y
A
P
E
G
-----
G
F
S
G
R
----
T
N
K
L
V
D
G
-
C
Y
S
--
H
W
V
G
N
C
-----
W
P
L
V
Q
A
A
L
----------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
44.11
26%
-124
- C5 -
4L9P
3
?
B:
[332-383]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
P
R
Y
M
N
I
A
-
T
L
L
P
W
L
S
A
R
Q
Y
A
P
E
G
-----
G
F
S
G
R
----
T
N
K
L
V
D
G
-
C
Y
S
--
H
W
V
G
N
C
-----
W
P
L
V
Q
A
A
L
----------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
26.30
53%
275
- C2 -
2LNY
-
?
A:
[1-20]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
A
V
A
G
L
Y
G
L
G
E
D
RQHR
K
K
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
15.35
15%
191
- C5 -
1LGH
5
LHB1_PHAMO
B:
[13-32]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-----
I
A
V
H
D
Q
F
K
T
T
F
S
A
F
I
I
L
A
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
14.24
10%
23
- C5 -
2HI2
1
FMM1_NEIGO
A:
[1-20]
----------------------------------------------------------------------------------------------------------------------------------------------------
F
T
L
I
E
L
M
I
V
I
A
I
V
G
I
L
A
A
V
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
13.70
21%
233
- C1 -
1NXH
-
?
A:
[24-37]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-----
V
K
P
L
S
R
E
L
--
E
I
--
D
V
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
12.82
21%
32
- C5 -
2L16
-
TATAD_BACSU
A:
[4-22]
---------------------------------------------------------------------------------------------------------------------------------------------------
N
I
G
I
P
G
L
I
L
I
F
V
I
A
L
I
I
F
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------