@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0087: (2016-03-12 )
MATKKDVHDLFLNHVNSNAVKTRKMMGEYIIYYDSVVIGGLYDNRLLVKATKSVRHQLQDNTLVSPYPGAKEMILIPDITEAINLTNLFELIKNDLKN
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------......-...10-.-...-..--..-20-------....--..----..30..-----.----...-..40.-----.--------------.--.....50..---------....-..60-----.--.-----......-------.--70..-----.....--.80---.--........90.--......----------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------MAT
K
K
D
-
V
H
D
L
F
-
L
-
N
HV-NS--
N
A
-
V
K
-------
T
R
K
M--MG----
E
Y
I
I
Y
Y-----D----
S
V
V
-IGGLY-----D--------------N--R
L
L
V
K
A
T
K
S
---------
V
R
H
Q
-LQD------N--T-----LVSPYP-------G--A
K
E
M
-----
I
L
IPD--
I
T
----
E
--
A
I
N
L
T
N
L
F
E
L
I
--
K
N
DLKN----------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
81.79
14%
-128
- C3 -
2OD0
5
?
A:
[3-102]
---------------------------------------------------------------------------------------------------------------------
K
P
-
I
L
K
D
S
-
M
-
K
L
F
-
E
A
L-
G
T
-
I
K
-------
S
R
S
M
--
F
G
----
G
F
G
L
F
A
-----
D
----
E
T
M
-
F
A
L
V
V
-----
N
--------------
N
--
Q
L
H
I
R
A
D
Q
Q
---------
T
S
S
D
-
F
E
T
------
Q
--------
G
L
K
P
Y
V
Y
K
K
RG
F
P
V
--
V
T
K
Y
-----
Y
A
I
S
S
E
L
W
E
----
S
--
S
D
R
L
I
E
V
A
K
K
S
--
L
E
N
-------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
77.53
18%
-103
- C3 -
2KL4
-
?
A:
[20-116]
---------------------------------------------------------------------------------------------------------------------
R
D
-
R
T
E
E
I
-
L
-
S
W
V
-
A
A
TF
P
N
-
L
E
-------
P
Q
M
K
--
W
N
----
T
P
M
F
S
N
-----
Q
----
G
T
F
-
I
I
G
F
S
T
S
---
K
--------------
H
--
H
L
S
V
S
P
E
E
I
---------
G
I
S
Q
-
F
A
D
------
A
--
I
-----
A
Q
A
G
Y
S
-------
A
--
T
K
G
L
-----
F
R
I
P
W
ND
P
V
----
H
--
Y
E
L
L
K
Q
M
I
E
F
N
--
I
Q
D
-------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
73.26
26%
-69
- C3 -
3NPD
8
?
A:
[1-113]
-----------------------------------------------------------------------------------------------------------------
G
A
S
L
K
D
-
F
E
L
S
K
M
L
-
E
K
V
-
A
K
--
E
S
S
V
G
-------
T
P
R
A
--
I
N
----
E
D
I
L
D
Q
-----
G
----
Y
T
V
-
E
G
N
Q
L
-----
I
--------------
N
--
H
L
S
V
R
A
S
H
A
E
R
M
R
S
N
P
D
S
V
R
S
Q
-
L
G
D
------
S
--
V
-----
C
S
N
--
T
-------
G
--
Y
R
Q
L
L
A
R
G
A
I
L
T
Y
S
--
F
T
----
E
--
Y
K
T
N
Q
P
V
A
T
E
R
F
D
A
G
S
C
R
-----------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
70.19
13%
-108
- C3 -
2OC6
6
FRA_BACSU
A:
[18-115]
---------------------------------------------------------------------------------------------------------------------
R
E
-
R
T
E
E
V
-
L
-
T
W
I
-
K
N
K
Y
P
N
-
L
H
-------
T
E
I
K
--
W
N
----
Q
P
M
F
T
D
-----
H
----
G
T
F
-
I
I
G
F
S
V
S
---
K
--------------
K
H
L
A
V
A
P
E
K
V
-----------
T
I
A
H
-
V
E
D
------
D
--
I
-----
V
K
A
G
Y
D
-------
Y
--
T
E
Q
L
-----
I
R
I
P
W
NG
P
V
----
D
--
Y
T
L
L
E
K
M
I
E
F
N
--
I
L
D
K
------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
69.48
12%
-98
- C3 -
2A1V
-
?
A:
[6-114]
--------------------------------------------------------------------------------------------------------------------
P
M
Q
-
T
V
D
D
L
-
R
-
S
V
C
-
D
E
L-
P
H
-
S
L
-------
E
T
F
P
--
F
D
DE--
T
L
V
F
K
V
-----
G
Y
LS
K
S
R
M
-
Y
A
L
T
D
-----
I
TQDP----------
L
--
R
L
S
L
K
V
D
P
E
---------
R
G
E
E
-
L
R
Q
------
A
HP
Q
-----
S
I
A
P
G
Y
HL-----
N
--
K
K
H
W
-----
V
T
V
T
L
DG
T
V
----
P
--
A
E
L
L
G
E
L
L
R
G
S
--
Y
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
67.64
23%
-73
- C3 -
2JMP
-
DNAA_MYCGE
A:
[1-100]
-----------------------------------------------------------------------------------------------------------------
M
E
Q
F
N
A
-
F
K
S
L
L
-
K
-
K
H
Y
-
E
-------
K
-------
T
I
G
F
--
H
D
----
K
Y
I
K
D
I
-----
N
----
R
F
V
-
F
K
N
-------
N
--------------
V
--
L
L
I
L
L
E
N
E
F
---------
A
R
N
S
-
L
N
D
------
N
--
S
EIIHL
A
E
S
L
Y
E
-------
G
--
I
K
S
V
-----
N
F
V
N
E
--
Q
D
----
F
--
F
F
N
L
A
K
L
E
E
N
S
--
R
D
T
L
Y
Q
NSG-------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
67.40
13%
-118
- C3 -
2KFP
-
?
A:
[5-115]
---------------------------------------------------------------------------------------------------------------------------
Q
F
-
I
-
D
Y
A
-
Q
K
K-
Y
D
-
T
K
-------
P
D
H
P
--
W
E
KFPD
Y
A
V
F
R
H
-----
S
DN--
D
K
W
-
Y
A
L
L
M
-----
D
I
P
AEKIGINGD
K
R
V
D
--
V
I
D
L
K
V
Q
P
E
---------
L
V
G
S
-
L
R
K
------
K
--
P
-----
G
I
Y
P
A
Y
-------
H
MN
K
E
H
W
-----
I
T
V
L
L
NG
P
L
----
G
--
A
K
E
I
H
S
L
I
E
D
S
--
F
Q
L
-------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
66.75
16%
-114
- C3 -
1K3E
-
CEST_ECO57
A:
[1-146]
-----------------------------------------------------------------------------------------------------------------
M
S
S
R
S
E
L
L
L
E
K
F
-
A
-
E
K
I
-
G
I
--
G
S
-
I
S
F
N
ENR
L
C
S
F
A
I
--
D
E
----
I
Y
Y
I
S
L
S
DAND
E
----
Y
M
M
-
I
Y
G
V
C
GKFPT
D
--------------
N
--
S
N
F
A
L
E
I
L
N
---------
A
N
L
W
-
F
A
E
------
N
--
G
GP---
Y
L
C
Y
E
A
-------
G
--
A
Q
S
L
-----
L
L
A
L
R
--
F
P
LDDA
T
--
P
E
K
L
E
N
E
I
E
V
V
--
V
K
S
M
E
N
L
Y
L
V
L
H
N
Q
GITLK
I
E
E
I
S
S---------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
62.69
9%
-124
- C3 -
2FKI
-
YJBR_ECOLI
A:
[4-102]
--------------------------------------------------------------------------------------------------------------------------
S
E
L
-
L
-
Q
Y
C
-
M
A
K-
P
G
-
A
E
-------
Q
S
V
H
ND
W
K
----
A
T
Q
I
K
V
-----
E
----
D
V
L
-
F
A
M
V
K
-----
E
V
EN
R
----------
P
--
A
V
S
L
K
T
S
P
E
---------
L
A
E
L
-
L
R
Q
------
Q
H-
S
-----
D
V
R
P
S
R
-------
H
LN
K
A
H
W
-----
S
T
V
Y
L
DG
S
L
----
P
--
D
S
Q
I
Y
Y
L
V
D
A
S
--
Y
Q
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
58.36
26%
-80
- C4 -
3LV9
-
?
A:
[75-143]
------------------------------------------------------------------------------------------------------------------------
I
R
D
L
Y
-
N
-
Q
K
I
-
N
E
--
N
K
-
I
E
-------
L
E
E
I
--
L
R
----
D
-
I
I
Y
------------------
I
S
-----
E
--------------
N
--
L
T
I
D
K
A
L
E
R
---------
I
R
K
E
K
L
Q
L
------
A
--
I
-----
V
V
D
E
Y
G
-------
G
--
T
S
G
V
-----
V
T
I
E
D
--
I
L
----
E
--
E
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
56.66
14%
-85
- C3 -
1X2I
-
?
A:
[2-69]
-----------------------------------------------------------------------------------------------------------------
A
L
T
L
A
E
-
R
Q
R
L
I
-
V
-
E
G
L
P
H
V
--
S
A
-
T
L
-------
A
R
R
L
--
L
K
----
H
F
----------------------
G
-----
S
--------------
V
--
E
R
V
F
T
A
S
--------------------------------------------------
V
A
E
L
-----
M
K
V
E
G
--
I
G
----
E
--
K
I
-
A
K
E
I
R
R
V
I
--
T
A
P
Y
I
E
----------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
55.27
9%
-72
* C3 *
2OD0
5
?
A:
[3-105]
----------------------------------------------------------------------------------------------------------------------
K
-
P
I
L
K
D
-
S
M
K
L
F
-
E
A
--
L
G
-
T
I
-------
K
S
R
S
M-
F
G
----
G
F
G
L
F
A
-----
D
----
E
-
T
M
F
A
L
V
V
-----
N
--------------
N
--
Q
L
H
I
R
A
D
Q
Q
---------
T
S
S
D
-
F
E
T
Q
GLK
P
Y
V
--
Y
-----
K
K
R
G
F
P
-------
V
--
V
T
K
Y
-----
Y
A
I
S
S
--
E
L
----
W
E
S
S
D
R
L
I
E
V
A
K
K
S
--
L
E
N
A
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
53.56
36%
-77
- C5 -
4BQ8
-
A:
[138-180]
------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
--
T
G
-----
Y
I
I
Y
Y
-----
S
----
T
D
V
-
N
A
E
I
H
-----
D
--------------
W
--
V
I
E
P
V
V
G
N
R
---------
L
T
H
Q
-
I
Q
E
------
L
--
T
-----
L
D
T
P
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
51.30
35%
-82
- C5 -
1X5K
-
A:
[54-92]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
I
Y
Y
-----
S
----
T
D
V
-
N
A
E
I
H
-----
D
--------------
W
--
V
I
E
P
V
V
G
N
R
---------
L
T
H
Q
-
I
Q
E
------
L
--
T
-----
L
D
T
P
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
50.78
36%
-58
- C5 -
3P4L
-
NEO1_HUMAN
A:
[986-1028]
------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
--
T
G
-----
Y
I
I
Y
Y
-----
S
----
T
D
V
-
N
A
E
I
H
-----
D
--------------
W
--
V
I
E
P
V
V
G
N
R
---------
L
T
H
Q
-
I
Q
E
------
L
--
T
-----
L
D
T
P
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
50.53
35%
-80
- C5 -
4BQB
-
NEO1_MOUSE
A:
[142-180]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
I
Y
Y
-----
S
----
T
D
V
-
N
A
E
I
H
-----
D
--------------
W
--
V
I
E
P
V
V
G
N
R
---------
L
T
H
Q
-
I
Q
E
------
L
--
T
-----
L
D
T
P
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
50.23
36%
-53
- C5 -
4BQ9
-
NEO1_MOUSE
A:
[138-180]
------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
--
T
G
-----
Y
I
I
Y
Y
-----
S
----
T
D
V
-
N
A
E
I
H
-----
D
--------------
W
--
V
I
E
P
V
V
G
N
R
---------
L
T
H
Q
-
I
Q
E
------
L
--
T
-----
L
D
T
P
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
49.43
35%
-70
- C5 -
4BQC
-
NEO1_MOUSE
A:
[142-180]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
I
Y
Y
-----
S
----
T
D
V
-
N
A
E
I
H
-----
D
--------------
W
--
V
I
E
P
V
V
G
N
R
---------
L
T
H
Q
-
I
Q
E
------
L
--
T
-----
L
D
T
P
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
49.29
20%
0
- C2 -
4P5F
1
?
A:
[8-374]
LT
P
T
E
A
A
V
L
R
E
L
R
L
H
RPQLPL
D
T
L
L
F
T
D
P
NKDP
D
D
V
V
T
Y
T
I
A
K
Q
L
Q
A
D
GFLRLT
D
V
V
V
T
L
G
D
A
D
M
R
S
Q
R
A
Q
L
A
K
G
V
F
D
R
L
ALPD
V
R
V
A
R
G
Q
D
Y
P
MT
S
T
Q
A
R
E
H
S
KFLAEGAAL
R
A
A
P
D
A
-
V
H
----------
T
D
--
G
V
-
R
A
-------
M
C
E
R
--
L
A
----
T
S
P
H
K
L
-----
G
----
M
V
V
-
I
A
G
M
T
-----
D
A
-------------
S
--
A
L
L
A
E
A
G
D
L
---------
V
R
E
K
-
V
A
S
------
I
--
T
-----
I
M
G
G
I
D
-------
P
--
A
R
D
A
DG---
L
V
Q
P
D
--
T
R
----
A
--
Y
N
N
A
T
D
I
H
A
A
R
--
A
L
Y
R
R
A
Q
Q
L
GI
P
L
R
I
L
T
KEAAYKAAVP
P
A
F
Y
E
G
I
A
R
NGH
P
V
G
E
Y
L
R
D
V
Q
K
N
A
L
K
G
L
W
E
G
I
Q
A
NLIPGLD
T
A
W
F
F
R
T
FVAGALS
F
D
A
I
W
P
Q
VT
K
L
N
L
Y
D
P
L
T
L
L
A
A
L
P
G
T
A
R
L
LFQPTPMHREGAS
P
V
E
H
V
G
HAEVVR
P
E
K
A
R
L
L
L
S
A
L
A
K
A
A
L
V
10
PsiBlast_PDB
49.20
35%
-78
- C5 -
4UI2
-
BMP2_HUMAN
A:
[142-180]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
I
Y
Y
-----
S
----
T
D
V
-
N
A
E
I
H
-----
D
--------------
W
--
V
I
E
P
V
V
G
N
R
---------
L
T
H
Q
-
I
Q
E
------
L
--
T
-----
L
D
T
P
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------