@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0092: (2016-03-12 )
MKRLNKLVLGIIFLFLVISITAGCGIGKEAEVKKSFEKTLSMYPIKNLEDLYDKEGYRDDQFDKNDKGTWIINSEMVIQPNNEDMVAKGMVLYMNRNTKTTNGYYYVDVTKDEDEGKPHDNEKRYPVKMVDNKIIPTKEIKDKNIKKEIENFKFFVQYGNFKDLSKYKDGDISYNPEVPSYSAKYQVTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKDIEFTFVEKKGENIYFSDSLHLEPSEDK
Atome Classification :
(15 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....-....10........20.....----------.----.-.30.......---.40........50-........---60-------........70........80....--....90........100.----------......110.......120-------.........130........140.-....-..150.....--.-.160.......170.......180.......190.......200.......210.----------------------------------......220.......----------230.......240.......250...-----------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
R
L
N
-
K
L
V
L
G
I
I
F
L
F
L
V
I
S
ITAGCGI----------G----
K
-
E
A
E
V
K
K
S
F
E
K
---
T
L
SMYPIK
N
L
E
D
L
-
Y
DKEGYRD---DQ-------FDKNDK
G
T
W
I
INS
E
M
V
IQPNN
E
D
M
--
V
AK
G
M
V
L
Y
M
NRNTKTTN
G
----------
Y
Y
Y
V
D
V
TKDEDEGKPHD---------NEKRY
P
V
K
MV-DNKIIP
T
K
EIK
D
K
-
N
I
K
K
-
E
I
EN
F
K
F
F
V
Q
--Y-GN
F
K
D
L
S
KYKDGD
I
S
YNPEVPSYS
A
K
Y
Q
VTNDDY
N
V
K
Q
L
R
K
RYDIPTNKA
P
K
L
L
L
----------------------------------KGTGNLKGSSVGYKD
I
----------
E
F
T
F
V
EKKGE
N
I
Y
FSDSLHLEPSEDK-----------------------------
21
Fugue
98.93
69%
-55
* C6 *
4EGD
2
Y2783_STAA8
A:
[27-253]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
----
R
-
N
A
Q
I
K
D
T
F
N
Q
---
T
L
K
L
Y
P
T
K
N
L
D
D
F
-
Y
D
K
E
G
F
R
D
---
Q
E
-------
F
K
K
G
D
K
G
T
W
I
V
N
S
E
M
V
I
E
P
K
G
K
D
M
--
E
T
R
G
M
V
L
Y
I
N
R
N
T
R
T
T
K
G
----------
Y
Y
F
I
S
------
E
M
T
P
K
D
---------
D
E
K
R
Y
P
V
K
M
E
-
H
N
K
I
I
P
T
K
P
L
P
N
D
-
K
L
K
K
-
E
I
E
N
F
K
F
F
V
Q
--
Y
-
G
N
F
K
D
I
N
D
Y
K
D
G
D
I
S
Y
N
P
N
V
P
S
Y
S
A
K
Y
Q
L
N
N
D
D
Y
N
V
Q
Q
L
R
K
R
Y
D
I
P
T
K
Q
A
P
K
L
L
L
----------------------------------
K
G
D
G
D
L
K
G
S
S
V
G
S
R
S
L
----------
E
F
T
F
V
E
N
K
E
E
N
I
Y
F
T
D
S
V
Q
Y
T
P
S
E
-------------------------------
3
PsiBlast_PDB
98.60
66%
-56
- C6 -
4EG9
1
Y2783_STAA8
A:
[27-254]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
----
R
-
N
A
Q
I
K
D
T
F
N
Q
---
T
L
K
L
Y
P
T
K
N
L
D
D
F
-
Y
D
K
E
G
F
R
D
---
Q
E
-------
F
K
K
G
D
K
G
T
W
I
V
N
S
E
M
V
I
E
P
K
G
K
D
M
--
E
T
R
G
M
V
L
Y
I
N
R
N
T
R
T
T
K
G
----------
Y
Y
F
I
S
E
M
T
D
D
S
N
G
R
P
K
D
---------
D
E
K
R
Y
P
V
K
M
E
-
H
N
K
I
I
P
T
K
P
L
P
N
D
-
K
L
K
K
-
E
I
E
N
F
K
F
F
V
Q
--
Y
-
G
N
F
K
D
I
N
D
Y
K
D
G
D
I
S
Y
N
P
N
V
P
S
Y
S
A
K
Y
Q
L
N
N
D
D
Y
N
V
Q
Q
L
R
K
R
Y
D
I
P
T
K
Q
A
P
K
L
L
L
----------------------------------
K
G
D
G
D
L
K
G
S
S
V
G
S
R
S
L
----------
E
F
T
F
V
E
N
K
E
E
N
I
Y
F
T
D
S
V
Q
Y
T
P
S
E
D
------------------------------
2
PsiBlast_PDB
98.13
68%
-58
- C6 -
4EGD
2
Y2783_STAA8
A:
[27-253]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
----
R
-
N
A
Q
I
K
D
T
F
N
Q
---
T
L
K
L
Y
P
T
K
N
L
D
D
F
-
Y
D
K
E
G
F
R
D
---
Q
E
-------
F
K
K
G
D
K
G
T
W
I
V
N
S
E
M
V
I
E
P
K
G
K
D
M
--
E
T
R
G
M
V
L
Y
I
N
R
N
T
R
T
T
K
G
----------
Y
Y
F
I
S
E
M
T
------
P
K
D
---------
D
E
K
R
Y
P
V
K
M
E
-
H
N
K
I
I
P
T
K
P
L
P
N
D
-
K
L
K
K
-
E
I
E
N
F
K
F
F
V
Q
--
Y
-
G
N
F
K
D
I
N
D
Y
K
D
G
D
I
S
Y
N
P
N
V
P
S
Y
S
A
K
Y
Q
L
N
N
D
D
Y
N
V
Q
Q
L
R
K
R
Y
D
I
P
T
K
Q
A
P
K
L
L
L
----------------------------------
K
G
D
G
D
L
K
G
S
S
V
G
S
R
S
L
----------
E
F
T
F
V
E
N
K
E
E
N
I
Y
F
T
D
S
V
Q
Y
T
P
S
E
-------------------------------
5
PsiBlast_CBE
96.54
68%
-67
- C6 -
4EGD
1
Y2783_STAA8
B:
[27-252]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
----
R
-
N
A
Q
I
K
D
T
F
N
Q
---
T
L
K
L
Y
P
T
K
N
L
D
D
F
-
Y
D
K
E
G
F
R
D
---
Q
E
-------
F
K
K
G
D
K
G
T
W
I
V
N
S
E
M
V
I
E
P
K
G
K
D
M
--
E
T
R
G
M
V
L
Y
I
N
R
N
T
R
T
T
K
G
----------
Y
Y
F
I
S
E
M
T
-------
K
D
---------
D
E
K
R
Y
P
V
K
M
E
-
H
N
K
I
I
P
T
K
P
L
P
N
D
-
K
L
K
K
-
E
I
E
N
F
K
F
F
V
Q
--
Y
-
G
N
F
K
D
I
N
D
Y
K
D
G
D
I
S
Y
N
P
N
V
P
S
Y
S
A
K
Y
Q
L
N
N
D
D
Y
N
V
Q
Q
L
R
K
R
Y
D
I
P
T
K
Q
A
P
K
L
L
L
----------------------------------
K
G
D
G
D
L
K
G
S
S
V
G
S
R
S
L
----------
E
F
T
F
V
E
N
K
E
E
N
I
Y
F
T
D
S
V
Q
Y
T
P
S
--------------------------------
1
PsiBlast_PDB
94.84
75%
-64
- C6 -
4BIG
-
Y053_STAA8
A:
[25-244]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
S
F
E
K
---
T
L
S
M
Y
P
I
K
N
L
E
D
L
-
Y
D
K
E
G
Y
R
D
---
D
Q
-------
F
D
K
N
D
K
G
T
W
I
V
N
S
Q
M
A
I
Q
N
K
G
E
A
L
--
K
I
K
G
M
L
L
K
I
D
R
N
T
R
S
A
K
G
----------
F
Y
Y
T
N
E
I
K
T
E
K
Y
E
V
A
Q
D
---------
N
Q
K
K
Y
P
V
K
M
I
-
N
N
K
F
I
S
T
E
E
V
K
E
E
-
N
I
K
K
-
E
I
E
N
F
K
F
F
A
Q
--
Y
-
S
N
F
-----
Y
K
D
G
D
I
S
------
S
Y
S
A
Q
Y
Q
L
T
N
D
D
Y
N
V
K
Q
L
R
K
R
Y
D
I
P
T
N
K
A
P
K
L
L
L
----------------------------------
K
G
T
----------
K
K
I
----------
E
F
T
F
L
E
N
K
N
E
N
I
Y
F
T
D
S
L
H
L
E
P
S
--------------------------------
27
Fugue
52.58
23%
-21
- C5 -
4Q6O
8
?
A:
[21-437]
MIEKAPTNVEDRDK
A
P
H
L
L
L
L
A
GIQGDE
P
G
G
F
N
A
T
N
L
F
L
M
HYSVL
K
G
L
V
E
V
VPVLN
K
P
S
M
L
R
NHRGLYGDMNRKFAALDKNDPE
Y
P
T
I
Q
E
I
K
S
L
I
A
KPSID
A
V
L
H
L
H
D
G
G
G
YYRPVYVDAMLNPKRWGN
C
F
I
I
DQDEVKGAKFPN
L
L
A
F
A
N
N
T
I
E
S
I
N
A
H
LLHPIE
E
Y
H
L
K
N
TRTAQGD
T
E
M
Q
K
A
L
T
F
Y
A
I
N
Q
KKS
A
F
A
N
E
A
S
KELP
L
A
S
R
V
F
-
Y
H
L
Q
A
I
E
G
L
L
N
Q
L
N
I
-----------------------------
P
F
K
R
---
D
F
D
L
N
P
N
S
V
H
A
L
I
------------------------
N
D
K
N
L
W
A
K
I
S
S
L
P
K
M
P
L
F
-
N
L
--
R
P
K
L
N
H
F
P
L
P
H
N
T
K
I
P
Q
I
----------
P
I
E
S
N
A
------------------------
Y
I
V
G
L
V
-
K
N
K
--------------------
Q
E
V
F
L
K
--
Y
-
G
N
-
K
L
M
T
R
L
S
P
F
Y
I
E
F
D
P
S
L
E
--
E
V
K
M
Q
I
D
N
K
D
Q
M
V
K
-
I
G
S
V
V
E
V
K
----
E
S
F
Y
I
----------------------------------
H
A
M
D
N
I
R
A
N
V
I
G
F
S
V
S
----------
N
E
N
K
P
N
E
A
G
Y
T
I
K
F
K
D
-
F
Q
K
R
F
S
L
D
K
QER
I
Y
R
I
E
F
Y
KNNAFS
G
M
I
L
V
K
F
V-----
26
Fugue
49.11
15%
8
- C8 -
2UVQ
1
UCK1_HUMAN
A:
[24-237]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
F
L
I
G
V
S
G
G
T
A
S
----------
G
----
K
-
S
T
V
C
E
K
I
M
E
L
L
GQ
N
E
V
E
Q
R
Q
R
K
V
V
I
L
-
S
Q
D
R
F
Y
K
V
LT
A
E
Q
-------
K
A
K
A
L
K
G
Q
Y
N
F
D
H
P
D
A
F
---
D
N
D
L
--
M
H
R
T
L
K
N
I
V
E
G
K
T
V
E
V
P
T
----------
Y
D
F
V
T
H
S
R
L
P
E
T
----
T
---------
V
V
Y
P
A
D
V
V
L
F
-
E
G
I
L
V
----
F
Y
S
Q
-
E
I
R
D
-
M
F
-
H
L
R
L
F
V
D
--
T
-
D
S
D
V
R
L
S
R
R
V
L
R
D
V
R
D
L
E
Q
I
L
T
Q
Y
T
T
--------
F
V
K
P
A
F
E
E
F
C
L
P
T
K
K
Y
A
D
V
I
I
----------------------------------
P
R
G
V
D
---
N
M
V
A
I
N
L
I
----------
V
Q
H
I
Q
D
I
L
N
G
D
I
-------------------------------------------
24
Fugue
49.07
16%
2
* C8 *
2JEO
-
UCK1_HUMAN
A:
[21-235]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
-------------
P
F
L
I
G
V
S
G
G
T
A
S
----------
G
----
K
-
S
T
V
C
E
K
I
M
E
L
L
GQ
N
E
V
E
Q
R
Q
R
K
V
V
I
L
-
S
Q
D
R
F
Y
K
V
LT
A
E
Q
-------
K
A
K
A
L
K
G
Q
Y
N
F
D
H
P
D
A
F
---
D
N
D
L
--
M
H
R
T
L
K
N
I
V
E
G
K
T
V
E
V
P
T
----------
Y
D
F
V
T
H
S
R
L
P
E
T
----
T
---------
V
V
Y
P
A
D
V
V
L
F
-
E
G
I
L
V
----
F
Y
S
Q
-
E
I
R
D
-
M
F
-
H
L
R
L
F
V
D
--
T
-
D
S
D
V
R
L
S
R
R
V
L
R
D
V
---
R
D
L
E
Q
I
L
T
Q
Y
T
T
F
-----
V
K
P
A
F
E
E
F
C
L
P
T
K
K
Y
A
D
V
I
I
----------------------------------
P
R
G
V
D
---
N
M
V
A
I
N
L
I
----------
V
Q
H
I
Q
D
I
L
N
G
D
I
-------------------------------------------
23
Fugue
47.80
15%
20
- C2 -
3TD7
1
YR596_MIMIV
A:
[35-295]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
N
G
L
I
-
T
K
I
W
G
T
A
G
W
T
F
N
H
A
V
T
F
G
Y
P
L
----------
N
PT
S
D
D
-
K
R
R
Y
K
N
Y
F
I
S
---
L
G
D
V
L
P
C
R
L
C
R
E
S
-
Y
K
K
F
I
T
T
G
---
K
T
ALTNEVL
R
N
R
H
T
L
T
K
W
F
Y
D
V
H
N
A
V
N
N
K
L
E
V
D
--
Y
G
L
S
Y
E
D
V
V
N
K
Y
E
S
F
R
A
K
----------
C
G
K
V
T
P
L
D
H
K
A
F
S
F
K
K
L
---------
Y
Y
M
D
A
P
I
V
S
L
-
D
K
V
E
N
F
V
R
I
A
R
M
R
-
G
I
S
D
-
K
Y
F
A
F
L
E
L
A
T
V
L
N
-
G
D
F
N
E
L
K
K
--
Q
S
S
W
E
Y
R
N
K
Y
A
Q
K
K
I
R
H
M
R
E
N
A
I
P
S
I
E
E
Q
G
Y
W
K
G
T
P
T
I
D
E
L
K
L
L
L
----------------------------------
F
L
A
S
N
L
--------------------
N
R
T
E
V
N
D
A
I
N
N
V
E
R
L
E
S
T
H
Y
I
E
N
--------------------------------
28
Fugue
45.57
12%
41
- C3 -
3F8U
1
TPSN_HUMAN
B:
[21-401]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPA
V
I
E
C
W
F
V
EK
R
P
G
A
L
L
LPPPRPDLDPELYLS
V
H
D
P
A
-
G
A
L
Q
A
A
F
R
R
Y
P
R
G
A
P
A
P
H
C
E
M
----------
S
----
R
-
F
V
P
L
P
A
S
A
K
W
---
A
S
G
L
T
P
A
Q
N
C
P
R
A
-
L
D
G
A
W
L
M
V
---
S
I
-------
S
S
P
V
L
S
L
S
S
L
L
R
P
Q
P
E
P
Q
Q
E
P
V
L
I
--
T
M
A
T
V
V
L
T
V
L
T
H
T
P
A
P
R
V
R
LG
Q
D
A
L
L
D
L
S
F
A
Y
M
P
P
T
S
E
P
G
P
P
P
F
G
---------
L
E
W
R
R
Q
H
L
G
K
-
G
H
L
L
L
A
A
T
P
G
L
N
G
-
Q
M
P
A
-
A
Q
E
G
A
V
A
F
A
A
--
W
D
D
D
E
P
W
G
P
W
T
G
N
G
T
F
W
L
P
R
V
Q
P
F
Q
E
G
T
Y
L
A
T
I
H
L
P
Y
L
Q
G
-
Q
V
T
L
E
L
A
V
Y
K
P
P
K
V
S
L
M
PATLARAAPGEAP
P
E
L
L
C
L
V
S
H
F
Y
PSGG
L
E
V
E
W
E
L
R
G
G
P
G
G
R
S
Q
K
A
E
G
Q
----------
R
W
L
S
A
L
R
H
H
S
D
G
S
V
S
L
S
G
H
L
Q
P
P
P
V
T
TEQHG
A
R
Y
A
C
R
I
H
H
PSLPAS
G
R
S
A
E
V
T
L
E
4
PsiBlast_PDB
43.27
23%
3
* C7 *
1XG8
-
?
A:
[5-96]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
D
V
I
C
A
S
C
V
N
A
P
T
S
K
D
I
--
Y
D
W
L
Q
P
L
L
K
R
K
Y
P
N
I
S
F
K
----------
Y
T
Y
I
D
I
T
K
D
---
L
T
D
H
D
L
Q
F
I
E
R
I
E
Q
D
E
L
F
Y
P
L
I
T
M
-
N
D
E
Y
V
A
D
G
Y
I
Q
T
K
-
Q
I
T
R
-
F
I
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
41.38
12%
23
- C4 -
1T9K
3
MTNA_THEMA
A:
[5-344]
-------------------------------------------------------------------------------------------------------------------------------------------LKTKTMEWSGN
S
L
K
L
LDQRKLPFIE
E
Y
V
E
C
KT
H
E
E
V
A
H
A
I
K
E
MIVRG
A
P
A
I
G
V
A
A
A
F
G
Y
V
L
G
L
R
D
YKTG
S
L
T
D
W
M
K
Q
V
K
E
T
L
A
R
T
R
P
T
A
V
N
L
F
W
A
L
----------
N
----
R
M
E
K
V
F
F
E
N
A
D
R
---
E
N
L
F
E
I
L
E
N
E
A
L
K
M
A
Y
E
D
I
E
V
N
---
K
A
-------
I
G
K
N
G
A
Q
L
I
K
D
G
S
T
I
L
T
H
C
N
A
G
A
L
AT
V
D
Y
G
T
A
L
G
V
I
R
A
A
V
E
S
G
K
----------
R
I
R
V
F
A
D
----
E
T
R
P
Y
L
---------
Q
G
A
R
L
T
A
W
E
L
M
K
D
G
I
-
E
V
Y
V
I
T
D
N
M
A
G
W
L
M
K
R
G
L
I
D
A
V
V
V
--
G
-
A
D
----
R
I
A
L
N
G
D
T
A
N
K
I
G
T
Y
S
L
A
V
L
A
K
R
N
N
I
P
F
Y
V
A
A
P
V
S
T
I
D
P
T
I
R
S
G
E
E
I
P
I
----------------------------------
E
E
R
R
P
E
E
V
T
H
C
G
G
N
R
I
APEG
V
K
V
L
N
P
A
F
D
V
T
E
N
T
L
I
T
A
I
I
T
E
K
G
V
I
R
P
P
F
E
E
N
I
K
K
I
L
E----------------------
20
HHSearch
35.34
17%
72
- C7 -
1IIO
-
?
A:
[10-33]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
G
Q
I
I
G
A
L
A
-----
G
A
D
F
P
I
N
S
P
E
E
L
-
M
A
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
26.62
11%
131
- C6 -
3TLK
1
FEPB_ECOLI
A:
[27-62]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADWP
R
Q
I
T
D
S
R
----
G
-
T
H
T
L
E
S
Q
P
Q
R
---
I
V
S
T
S
V
T
-
L
T
G
S
L
-
L
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
0.06
9%
486
- C1 -
2AP3
-
?
A:
[3-17]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
I
Q
R
P
T
S
T
T
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------