@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0095: (2016-03-12 )
MKRLNKLVLGISFLFLVISITAGCGMGKEAEIKKSFEKTMSMYPIKNLEDLYDKEGYRDDQFDKNDKGTWIVNSQMAIQNKGEPMKSKGMVLYMNRNTRTTNGYYYVNVIKGEDKGKHQDNEKRYPVKMVDNKIILTKEIKDENIKIEIENFKFFVQYGNFKDLENYKDGDISYNPEVPSYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKDIEFTFVEKKEENIYFSDGLIFKPSEDK
Atome Classification :
(16 SA)
------------------------------------......-...10-.-........20....----.----------...30.-..-....---.40------...-..----...50...-.....---60-------........70....-----------....80........-------90.----.......100---.......-.110.....---------..120.......130....-....140.-....-..150---........160----.......170--.........---180.--------......190---.........200.......210.......220.......---------.----------230.......240..--.....250....----------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------M
K
R
L
N
K
-
L
V
L
G
--
I
-
S
F
L
F
L
V
I
S
ITAGCG----M----------G
K
E
A
E
I
-
K
K
-
S
F
E
K
---
T
M
S------MYP-IK----
N
L
E
D
L
Y
DK-EGYRD---DQ-------FDKNDK
G
T
W
I
VNS
Q
-----------
M
A
IQNKGEPMKSK
G
-------
M
V
L
----
Y
MNRNTRTT----N
G
Y
Y
Y
V
N
-
V
I
KGEDKGK---------HQDNEKRY
P
V
K
MVD-
N
K
I
I
-
L
T
K
EIKDE-
N
I
K
I
-
E
I
E
N
----
F
K
F
F
V
Q
YGNF
K
----
D
L
ENYKDG----D
I
S
YNPEVP---SYS
A
--------
K
Y
Q
LTND-----DY
N
V
K
Q
L
R
K
RYDIPTNKA
P
K
L
L
L
KGTGNLKG-SSVGYKD---------
I
----------
E
F
T
F
V
EKKEE
N
I
YFS--D
G
L
I
FKP-SEDK----------------------------------------------
3
PsiBlast_PDB
98.01
65%
-55
- C6 -
4EG9
1
Y2783_STAA8
A:
[27-254]
--------------------------------------------------------------------------------
G
R
N
A
Q
I
-
K
D
-
T
F
N
Q
---
T
L
K
------
L
Y
P
-
T
K
----
N
L
D
D
F
Y
D
K
-
E
G
F
R
D
---
Q
E
-------
F
K
K
G
D
K
G
T
W
I
V
N
S
E
-----------
M
V
I
E
P
K
G
K
D
M
E
T
R
G
-------
M
V
L
----
Y
I
N
R
N
T
R
T
T
----
K
G
Y
Y
F
I
S
-
E
M
T
D
D
S
N
G
R
---------
P
K
D
D
E
K
R
Y
P
V
K
M
E
H
-
N
K
I
I
-
P
T
K
P
L
P
N
D
-
K
L
K
K
-
E
I
E
N
----
F
K
F
F
V
Q
Y
G
N
F
K
----
D
I
N
D
Y
K
D
G
----
D
I
S
Y
N
P
N
V
P
---
S
Y
S
A
--------
K
Y
Q
L
N
N
D
-----
D
Y
N
V
Q
Q
L
R
K
R
Y
D
I
P
T
K
Q
A
P
K
L
L
L
K
G
D
G
D
L
K
G
-
S
S
V
G
S
R
S
---------
L
----------
E
F
T
F
V
E
N
K
E
E
N
I
Y
F
T
--
D
S
V
Q
Y
T
P
-
S
E
D
-----------------------------------------------
18
Fugue
97.29
68%
-55
* C6 *
4EGD
2
Y2783_STAA8
A:
[27-253]
--------------------------------------------------------------------------------
G
R
N
A
Q
I
-
K
D
-
T
F
N
Q
---
T
L
K
------
L
Y
P
-
T
K
----
N
L
D
D
F
Y
D
K
-
E
G
F
R
D
---
Q
E
-------
F
K
K
G
D
K
G
T
W
I
V
N
S
E
-----------
M
V
I
E
P
K
G
K
D
M
E
T
R
G
-------
M
V
L
----
Y
I
N
R
N
T
R
T
T
----
K
G
Y
Y
F
I
S
-
E
M
T
P
K
D
---------------
D
E
K
R
Y
P
V
K
M
E
H
-
N
K
I
I
-
P
T
K
P
L
P
N
D
-
K
L
K
K
-
E
I
E
N
----
F
K
F
F
V
Q
Y
G
N
F
K
----
D
I
N
D
Y
K
D
G
----
D
I
S
Y
N
P
N
V
P
---
S
Y
S
A
--------
K
Y
Q
L
N
N
D
-----
D
Y
N
V
Q
Q
L
R
K
R
Y
D
I
P
T
K
Q
A
P
K
L
L
L
K
G
D
G
D
L
K
G
-
S
S
V
G
S
R
S
---------
L
----------
E
F
T
F
V
E
N
K
E
E
N
I
Y
F
T
--
D
S
V
Q
Y
T
P
-
S
E
------------------------------------------------
2
PsiBlast_PDB
97.26
67%
-57
- C6 -
4EGD
2
Y2783_STAA8
A:
[27-253]
--------------------------------------------------------------------------------
G
R
N
A
Q
I
-
K
D
-
T
F
N
Q
---
T
L
K
------
L
Y
P
-
T
K
----
N
L
D
D
F
Y
D
K
-
E
G
F
R
D
---
Q
E
-------
F
K
K
G
D
K
G
T
W
I
V
N
S
E
-----------
M
V
I
E
P
K
G
K
D
M
E
T
R
G
-------
M
V
L
----
Y
I
N
R
N
T
R
T
T
----
K
G
Y
Y
F
I
S
-
E
M
T
---------------
P
K
D
D
E
K
R
Y
P
V
K
M
E
H
-
N
K
I
I
-
P
T
K
P
L
P
N
D
-
K
L
K
K
-
E
I
E
N
----
F
K
F
F
V
Q
Y
G
N
F
K
----
D
I
N
D
Y
K
D
G
----
D
I
S
Y
N
P
N
V
P
---
S
Y
S
A
--------
K
Y
Q
L
N
N
D
-----
D
Y
N
V
Q
Q
L
R
K
R
Y
D
I
P
T
K
Q
A
P
K
L
L
L
K
G
D
G
D
L
K
G
-
S
S
V
G
S
R
S
---------
L
----------
E
F
T
F
V
E
N
K
E
E
N
I
Y
F
T
--
D
S
V
Q
Y
T
P
-
S
E
------------------------------------------------
6
PsiBlast_CBE
96.35
67%
-67
- C6 -
4EGD
1
Y2783_STAA8
B:
[27-252]
--------------------------------------------------------------------------------
G
R
N
A
Q
I
-
K
D
-
T
F
N
Q
---
T
L
K
------
L
Y
P
-
T
K
----
N
L
D
D
F
Y
D
K
-
E
G
F
R
D
---
Q
E
-------
F
K
K
G
D
K
G
T
W
I
V
N
S
E
-----------
M
V
I
E
P
K
G
K
D
M
E
T
R
G
-------
M
V
L
----
Y
I
N
R
N
T
R
T
T
----
K
G
Y
Y
F
I
S
-
E
M
T
----------------
K
D
D
E
K
R
Y
P
V
K
M
E
H
-
N
K
I
I
-
P
T
K
P
L
P
N
D
-
K
L
K
K
-
E
I
E
N
----
F
K
F
F
V
Q
Y
G
N
F
K
----
D
I
N
D
Y
K
D
G
----
D
I
S
Y
N
P
N
V
P
---
S
Y
S
A
--------
K
Y
Q
L
N
N
D
-----
D
Y
N
V
Q
Q
L
R
K
R
Y
D
I
P
T
K
Q
A
P
K
L
L
L
K
G
D
G
D
L
K
G
-
S
S
V
G
S
R
S
---------
L
----------
E
F
T
F
V
E
N
K
E
E
N
I
Y
F
T
--
D
S
V
Q
Y
T
P
-
S
-------------------------------------------------
1
PsiBlast_PDB
94.50
79%
-59
- C6 -
4BIG
-
Y053_STAA8
A:
[25-244]
---------------------------------------------------------------------------------------
K
K
-
S
F
E
K
---
T
L
S
------
M
Y
P
-
I
K
----
N
L
E
D
L
Y
D
K
-
E
G
Y
R
D
---
D
Q
-------
F
D
K
N
D
K
G
T
W
I
V
N
S
Q
-----------
M
A
I
Q
N
K
G
E
A
L
K
I
K
G
-------
M
L
L
----
K
I
D
R
N
T
R
S
A
----
K
G
F
Y
Y
T
N
-
E
I
K
T
E
K
Y
E
V
---------
A
Q
D
N
Q
K
K
Y
P
V
K
M
I
N
-
N
K
F
I
-
S
T
E
E
V
K
E
E
-
N
I
K
K
-
E
I
E
N
----
F
K
F
F
A
Q
Y
S
N
F
---------
Y
K
D
G
----
D
I
S
---------
S
Y
S
A
--------
Q
Y
Q
L
T
N
D
-----
D
Y
N
V
K
Q
L
R
K
R
Y
D
I
P
T
N
K
A
P
K
L
L
L
K
G
T
-----------
K
K
---------
I
----------
E
F
T
F
L
E
N
K
N
E
N
I
Y
F
T
--
D
S
L
H
L
E
P
-
S
-------------------------------------------------
27
Fugue
46.75
10%
-14
- C4 -
1IVN
2
TESA_ECOLI
A:
[1-179]
----------------------------------------------
A
--
D
-
T
L
L
I
L
G
D
S
L
S
A
G
Y
R
----
M
----------
S
A
S
A
A
W
-
P
A
-
L
L
N
D
---
K
W
S
------
K
T
S
-
V
V
----
N
---------------------------
A
S
I
S
G
D
T
S
Q
Q
G
L
-----------
A
R
L
P
A
L
L
K
Q
H
Q
P
R
W
-------
V
L
V
----
E
L
G
G
N
------------------------------------
D
G
L
R
G
F
Q
P
Q
Q
T
E
-
Q
T
L
R
Q
I
L
Q
D
V
K
A
A
-
N
A
E
P
-
L
L
M
Q
----
I
R
L
P
A
N
Y
G
------------
R
R
Y
----
N
E
A
F
S
A
I
Y
P
---
K
L
A
K
--------
E
F
D
V
P
L
L
-----
P
F
F
M
E
E
V
Y
L
K
P
Q
W
M
Q
D
----------
D
G
I
H
P
-
N
R
D
A
Q
P
F
---------
I
----------
A
D
W
M
A
K
Q
L
Q
P
L
V
N
--------------------------------------------------------------
19
Fugue
46.35
14%
14
- C3 -
3TD7
1
YR596_MIMIV
A:
[35-295]
------------------------------------
H
N
G
L
I
T
-
K
I
W
G
--
T
-
A
G
W
T
F
N
H
A
V
T
F
G
Y
P
LNPT
S
----------
D
D
K
R
R
Y
-
K
N
-
Y
F
I
S
---
L
G
D
------
V
L
P
-
C
R
----
L
C
R
E
S
Y
K
K
-
F
I
T
T
G
---
K
T
ALTNEVL
R
N
R
H
T
L
T
K
W
F
Y
D
V
H
-----------
N
A
V
N
N
K
L
E
V
D
Y
G
L
S
-------
Y
E
D
----
V
V
N
K
Y
E
S
F
R
----
A
K
C
G
K
V
T
-
P
L
D
H
K
A
F
S
F
---------
K
K
L
Y
Y
M
D
A
P
I
V
S
L
D
-
K
V
E
N
-
F
V
R
I
A
R
M
R
-
G
I
S
D
-
K
Y
F
A
----
F
L
E
L
A
T
V
L
N
G
D
----
F
N
E
L
K
K
Q
S
----
S
W
E
Y
R
N
K
Y
A
---
Q
K
K
I
--------
R
H
M
R
E
N
A
-----
I
P
S
I
E
E
Q
G
Y
W
K
G
T
P
T
I
D
E
L
K
L
L
L
F
L
A
S
N
L
---
N
R
T
E
V
N
D
---------
A
----------
I
N
N
V
E
R
L
E
S
T
H
Y
I
E
N
------------------------------------------------------------
24
Fugue
44.31
15%
13
- C4 -
2JEO
-
UCK1_HUMAN
A:
[21-235]
------------------------------------
M
R
----------------
P
F
L
I
G
V
S
G
G
T
A
----
S
----------
G
K
S
T
V
C
-
E
K
-
I
M
E
L
L
GQ
N
E
V
------
E
Q
R
-
Q
R
----
K
V
V
I
L
S
Q
D
-
R
F
Y
K
V
LT
A
E
Q
-------
K
A
K
A
L
K
G
Q
Y
N
F
D
H
P
-----------
D
A
F
D
---
N
D
L
M
H
R
T
-------
L
K
N
----
I
V
E
G
K
T
V
E
V
----
P
T
Y
D
F
V
T
-----
H
S
R
L
P
---------
E
T
T
V
V
Y
P
A
D
V
V
L
F
E
-
G
I
L
V
-
F
----
Y
S
Q
-
E
I
R
--
D
M
F
H
----
L
R
L
F
V
D
T
D
S
D
V
----
R
L
S
R
R
V
L
R
----
D
V
---
R
D
L
E
---
Q
I
L
T
--------
Q
Y
T
T
F
----------
V
K
P
A
F
E
E
F
C
L
P
T
K
K
Y
A
D
V
I
I
P
R
G
V
D
----
N
M
V
A
I
N
L
---------
I
----------
V
Q
H
I
Q
D
I
L
N
G
D
I
---------------------------------------------------------------
22
Fugue
43.47
14%
16
- C4 -
4K7J
4
?
A:
[26-375]
----------------------GLLTDYGNASAS
P
W
M
K
K
L
Q
S
-
V
A
Q
G
SG
E
-
T
F
R
I
L
Q
I
G
D
S
H
T
A
G
----
D
----------
F
F
T
D
S
L
-
R
K
-
R
L
Q
K
---
T
W
G
DGGIGW
V
Y
P
-
A
N
VKGQ
R
M
A
A
V
R
H
N
-
G
N
W
Q
S
---
L
T
--------
S
R
N
N
T
G
D
F
P
L
G
G
I
-----------
L
A
H
T
G
S
G
G
S
M
T
L
T
A
SDGIASK
Q
R
V
----
S
L
F
A
K
P
L
L
A
----
E
Q
T
L
T
V
N
G
N
T
V
S
A
N
G
G
G
---------
W
Q
V
L
D
T
G
A
A
L
P
------
L
T
-
I
H
T
E
M
P
W
D
-
I
G
F
I
-
N
I
E
N
PAG
G
I
T
V
S
A
M
G
I
N
G
A
----
Q
L
T
Q
W
S
K
W
----
R
A
D
R
M
N
D
L
A
---
Q
T
G
A
D
L
V
I
L
S
Y
G
T
N
E
A
F
N
N
-----
N
I
D
I
A
D
T
E
Q
K
W
L
D
T
V
R
Q
I
R
D
S
L
P
A
A
G
I
L
I
I
G
-
A
P
E
S
L
K
N
TLGVCGTRP
V
----------
R
L
T
E
V
Q
Q
M
Q
R
R
V
A
R
Q
--
G
Q
T
M
F
W
S
-
W
Q
N
A
M
GGICS
M
K
N
W
L
N
Q
GWAAKDGVHFS
A
K
G
Y
R
R
A
A
E
M
L
A
D
S
L
E
E
L
V
R
S
A
26
Fugue
43.22
14%
18
* C4 *
2UVQ
1
UCK1_HUMAN
A:
[24-237]
-----------------------------------------------------
R
P
F
L
I
G
V
S
G
G
T
A
----
S
----------
G
K
S
T
V
C
-
E
K
-
I
M
E
L
L
GQ
N
E
V
------
E
Q
R
-
Q
R
----
K
V
V
I
L
S
Q
D
-
R
F
Y
K
V
LT
A
E
Q
-------
K
A
K
A
L
K
G
Q
Y
N
F
D
H
P
-----------
D
A
F
D
---
N
D
L
M
H
R
T
-------
L
K
N
----
I
V
E
G
K
T
V
E
V
----
P
T
Y
D
F
V
T
-----
H
S
R
L
P
---------
E
T
T
V
V
Y
P
A
D
V
V
L
F
E
-
G
I
L
V
-
F
----
Y
S
Q
-
E
I
R
D
-
M
F
-
H
----
L
R
L
F
V
D
T
D
S
D
V
----
R
L
S
R
R
V
L
R
----
D
V
R
D
L
E
Q
I
L
---
T
Q
Y
T
--------
T
-------------
F
V
K
P
A
F
E
E
F
C
L
P
T
K
K
Y
A
D
V
I
I
P
R
G
V
D
----
N
M
V
A
I
N
L
---------
I
----------
V
Q
H
I
Q
D
I
L
N
G
D
I
---------------------------------------------------------------
20
Fugue
42.57
13%
8
- C4 -
1T9K
3
MTNA_THEMA
A:
[5-344]
LKTKTMEWSGN
S
L
K
L
LDQRKLPFIE
E
Y
V
E
C
KT
H
E
E
V
A
H
A
I
K
E
M
I
V
R
G
--
A
-
P
A
I
G
V
A
A
A
F
G
Y
V
L
G
----
L
R
D
YKT-----
G
S
L
T
D
W
M
K
Q
-
V
K
E
T
---
L
A
R
------
T
R
P
T
A
V
----
N
L
F
W
A
L
N
R
M
E
K
V
F
F
---
E
N
-------
A
D
R
E
N
L
F
E
I
L
E
N
E
A
L
K
M
A
Y
E
D
I
E
V
N
K
A
I
G
K
N
G
A
Q
L
I
K
D
G
-------
S
T
I
----
L
T
H
C
N
A
G
A
L
ATVD
Y
G
T
A
L
G
V
-
I
R
A
A
V
E
S
G
K
RIRVFADET
R
P
Y
L
Q
G
A
R
L
T
A
W
E
L
M
K
D
G
I
-
E
V
Y
V
I
T
D
N
M
A
G
W
L
M
K
R
G
L
----
I
D
A
V
V
V
G
A
D
--------
R
I
A
L
N
G
----
D
T
A
N
K
I
G
T
Y
---
S
L
A
V
--------
L
A
K
R
N
N
I
-----
P
F
Y
V
A
A
P
V
S
T
I
D
P
T
I
R
S
G
E
E
I
P
I
E
E
R
R
P
E
E
V
-
T
H
C
G
G
N
R
---------
I
APEG
V
K
V
L
N
P
A
F
D
V
T
E
N
T
L
I
T
A
I
I
T
--
E
K
G
V
I
R
P
-
P
F
E
E
N
I
K
K
I
L
E---------------------------------------
23
Fugue
39.42
16%
21
- C4 -
4RWR
-
?
A:
[55-323]
----------------------VYREKQKKVESLP
M
E
E
Y
V
T
G
-
V
V
A
S
--
E
M
N
A
S
F
E
I
E
A
L
K
A
Q
A
L
----
A
----------
A
R
T
F
V
V
-
Q
R
M
L
S
G
G
---
K
K
N
------
N
A
D
-
V
T
----
D
T
D
Q
V
Y
K
S
-
K
E
E
L
K
---
K
Q
-------
W
G
N
N
Y
E
N
N
L
K
K
I
E
E
-----------
A
V
S
K
T
A
G
Q
V
L
T
Y
E
G
-------
K
P
I
SA
S
F
F
S
T
S
N
G
R
T
E
----
N
A
A
D
Y
W
G
-
N
D
Y
P
Y
L
K
S
V
---------
D
S
P
W
D
Q
A
S
P
-
K
F
T
S
-
E
Q
I
F
-
T
V
A
D
F
Q
K
R
L
G
V
K
V
-------------
L
A
D
G
K
V
G
----
D
I
K
G
R
T
E
G
KRVK
D
V
A
F
Q
G
K
T
L
T
G
R
D
V
R
D
--------
K
L
E
L
R
S
S
-----
D
F
T
W
K
Q
E
G
D
K
I
V
V
T
T
K
--------
G
F
G
H
G
V
G
M
S
Q
Y
G
A
N
G
M
--------
A
----------
A
---
E
G
K
K
Y
T
D
I
V
A
H
Y
Y
K
G
V
E
I
K
T
M
N
D
Y
-----------------------------------------------
4
PsiBlast_PDB
35.26
27%
43
* C5 *
3OP1
8
?
A:
[118-220]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
A
M
-
N
A
K
I
-
I
V
A
G
----
F
D
Y
--
T
F
G
S
D
K
KTAE
D
L
K
N
Y
F
D
G
----
E
V
I
I
V
P
P
V
E
---
D
E
K
G
--------
K
I
S
S
T
R
I
R
Q
A
I
L
D
G
N
V
K
E
A
G
K
L
L
G
A
P
L
P
S
R
G
M
V
V
---
H
G
N
-------
G
Y
P
T
---------
A
----------
N
L
V
L
L
D
R
--------------------------------------------------------------------
5
PsiBlast_PDB
31.86
48%
42
- C2 -
2XZ8
-
PGPLF_DROME
A:
[59-87]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
W
H
I
-
E
S
N
G
Y
K
D
---------
I
----------
N
Y
N
F
V
A
A
G
D
E
N
I
Y
E
A
--
R
G
--------------------------------------------------------
17
HHSearch
21.01
11%
137
- C5 -
3TLK
1
FEPB_ECOLI
A:
[27-62]
----------------------------------------------------------------------ADWP
R
Q
I
T
D
S
R
G
T
H
T
L
-
E
S
-
Q
P
Q
R
---
I
V
S
------
T
S
V
-
T
-----
L
T
G
S
L
L
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
0.16
9%
477
- C1 -
2AP3
-
?
A:
[3-17]
-------------------------------------------------------
M
G
I
Q
R
P
T
S
T
T
----
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------