@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0107: (2016-03-12 )
MKKKNIYSIRKLGVGIASVTLGTLLISGGVTPAANAAQHDEAQQNAFYQVLNMPNLNADQRNGFIQSLKDDPSQSANVLGEAQKLNDSQAPKADAQQNNFNKDQQSAFYEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPKADNNFNKEQQNAFYEILNMPNLNEEQRNGFIQSLKDDPSQSANLLSEAKKLNESQAPKADNKFNKEQQNAFYEILHLPNLNEEQRNGFIQSLKDDPSVSKEILAEAKKLNDAQAPKEEDNKKPGKEDGNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNNKPGKEDGNKPGKEDNNKPGKEDGNKPGKEDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQELVVDKKQPANHADANKAQALPETGEENPFIGTTVFGGLSLALGAALLAGRRREL
Atome Classification :
(20 SA)
------------------------------------------.........10........20.-------------.......30........40........50...----.....60.......--.70-----------.........80-----.........90..----------......100.......110-........120.......130--------------------.........140.......150..-.....160.......170--......-...180.......190---------------.........200.......210.......220..----------------------------.....230.......240....-------..-----------------.250----------------........------260.......270.......280.......290-------------------........300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------MKKKN
I
Y
S
I
R
K
LGV
G
I
A
S
V
T
L
G
-------------
T
L
L
ISGGVTPAANAA
Q
H
D
E
A
Q
Q
N
A
F
Y
Q
V
LNMP----NL
N
A
D
Q
RN
G
F
I
Q
S
L--KD------------DPS
Q
S
A
N
V
L
G
------
E
A
Q
KLNDSQAPKA----------DAQQNNFN
K
D
Q
Q
S
A
F
Y
E
I
--LNMPNL
N
E
A
Q
R
N
G
F
I
Q
S
LK----------------------DDPS
Q
S
T
N
V
L
G
E
A
K
KLNESQAPKA-DNNF
N
K
E
Q
Q
N
A
F
Y
E
I
L----NMPNL
N
-
E
E
Q
R
N
G
F
I
Q
S
LKDD-----------------P
S
Q
S
A
N
L
L
S
E
A
K
K
LNESQAPKADNKF
N
K
E
Q
Q
N
A
F
----------------------------
Y
E
I
LHLPNL
N
E
E
Q
R
N
G
F
I
Q
S
LK-------DD-----------------PS
V
-----------------
S
K
E
I
L
A
E
A
------
K
KLNDAQAPKEEDNKKPGKEDGNKPGKEDGNK--------------------PGKEDNKKPGKEDGNKPGKEDNNKPGKEDGNKPGKEDNNKPGKEDGNKPGKEDGNKPGKEDGN
G
V
H
V
VKPGD
T
V
N
D
I
A
KANGTTADKIAADNKLADKNMIKPG
Q
E
LVVDKKQPANHADANKAQALPETGEENP
F
I
G
T
T
V
FG
G
L
S
L
A
L
G
A
A
L
LAGRRREL-
1
PsiBlast_PDB
81.39
89%
-43
- C2 -
4NPF
-
Y:
[1-116]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
D
N
K
F
N
K
E
Q
Q
N
A
W
Y
E
I
L
----
H
L
P
N
L
N
-
E
E
Q
R
N
G
F
I
Q
S
L
K
D
D
-----------------
P
S
Q
S
A
N
L
L
A
E
A
K
K
L
N
D
A
Q
A
P
K
A
D
N
K
F
N
K
E
Q
Q
N
A
W
----------------------------
Y
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
G
F
I
Q
S
L
K
-------
D
D
-----------------
P
S
Q
-----------------
S
A
N
L
L
A
E
A
------
K
K
L
N
D
A
Q
A
P
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
61.48
89%
-18
- C2 -
2LR2
-
?
A:
[16-88]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
F
N
K
E
Q
Q
N
A
F
----------------------------
Y
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
A
F
I
Q
S
L
K
-------
D
D
SYIDTNNDGAYEGDELS
G
S
Q
-----------------
S
A
N
L
L
A
E
A
------
K
K
L
N
D
A
Q
A
P
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
60.47
98%
-35
- C2 -
4IOI
-
H:
[4-55]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
N
K
D
Q
Q
S
A
F
Y
E
I
--
L
N
M
P
N
L
N
E
A
Q
R
N
G
F
I
Q
S
L
K
----------------------
D
D
P
S
Q
S
T
N
V
L
G
E
A
K
K
L
N
E
S
Q
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
60.47
91%
-34
- C2 -
1SS1
-
A:
[2-59]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
N
K
F
N
K
E
Q
Q
N
A
F
----------------------------
W
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
G
F
I
Q
S
L
K
-------
D
D
-----------------
P
S
Q
-----------------
S
A
N
L
L
A
E
A
------
K
K
L
N
D
A
Q
A
P
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
59.75
98%
-35
- C2 -
4HKZ
-
H:
[3-54]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
N
K
D
Q
Q
S
A
F
Y
E
I
--
L
N
M
P
N
L
N
E
A
Q
R
N
G
F
I
Q
S
L
K
----------------------
D
D
P
S
Q
S
T
N
V
L
G
E
A
K
K
L
N
E
S
Q
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
59.57
89%
-30
- C2 -
1Q2N
-
A:
[1-58]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
N
K
F
N
K
E
Q
Q
N
A
F
----------------------------
Y
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
A
F
I
Q
S
L
K
-------
D
D
-----------------
P
S
Q
-----------------
S
A
N
L
L
A
E
A
------
K
K
L
N
D
A
Q
A
P
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
59.28
100%
-25
- C2 -
1EDK
-
SPA_STAAU
A:
[1-56]
-------------------------------------------------------------------------------------------
A
Q
H
D
E
A
Q
Q
N
A
F
Y
Q
V
L
N
M
P
----
N
L
N
A
D
Q
R
N
G
F
I
Q
S
L
--
K
D
------------
D
P
S
Q
S
A
N
V
L
G
------
E
A
Q
K
L
N
D
S
Q
A
P
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
58.85
65%
-34
- C2 -
1LP1
2
?
A:
[4-58]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
F
N
K
E
L
S
V
A
G
R
E
I
V
----
T
L
P
N
L
N
-
D
P
Q
K
K
A
F
I
F
S
L
W
D
D
-----------------
P
S
Q
S
A
N
L
L
A
E
A
K
K
L
N
D
A
Q
A
P
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
58.76
66%
-33
- C2 -
2LR2
-
?
A:
[14-88]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
N
K
F
N
K
E
Q
Q
N
A
F
----------------------------
Y
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
A
F
I
Q
S
L
K
-------
D
D
-----------------
S
Y
I
DTNNDGAYEGDELSGSQ
S
A
N
L
L
A
E
A
------
K
K
L
N
D
A
Q
A
P
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
58.51
98%
-32
- C2 -
4HJG
-
H:
[4-55]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
N
K
D
Q
Q
S
A
F
Y
E
I
--
L
N
M
P
N
L
N
E
A
Q
R
N
G
F
I
Q
S
L
K
----------------------
D
D
P
S
Q
S
T
N
V
L
G
E
A
K
K
L
N
E
S
Q
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
58.40
86%
-17
- C2 -
2LR2
-
?
A:
[15-88]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
N
K
F
N
K
E
Q
Q
N
A
F
Y
E
I
L
----
H
L
P
N
L
N
-
E
E
Q
R
N
A
F
I
Q
S
L
K
D
D
SYIDTNNDGAYEGDELS
G
S
Q
S
A
N
L
L
A
E
A
K
K
L
N
D
A
Q
A
P
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
57.86
100%
-21
- C2 -
1EDJ
-
SPA_STAAU
A:
[1-56]
-------------------------------------------------------------------------------------------
A
Q
H
D
E
A
Q
Q
N
A
F
Y
Q
V
L
N
M
P
----
N
L
N
A
D
Q
R
N
G
F
I
Q
S
L
--
K
D
------------
D
P
S
Q
S
A
N
V
L
G
------
E
A
Q
K
L
N
D
S
Q
A
P
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
57.15
100%
-29
- C2 -
1DEE
-
SPA_STAA8
G:
[1806-1856]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Q
Q
S
A
F
Y
E
I
--
L
N
M
P
N
L
N
E
A
Q
R
N
G
F
I
Q
S
L
K
----------------------
D
D
P
S
Q
S
T
N
V
L
G
E
A
K
K
L
N
E
S
Q
A
P
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
57.08
60%
-32
- C2 -
3QWO
-
?
C:
[2-53]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
N
D
E
K
K
L
A
S
----------------------------
N
E
I
A
N
L
P
N
L
N
E
E
Q
R
S
A
F
L
S
S
I
N
-------
D
D
-----------------
P
S
Q
-----------------
S
A
N
L
L
A
E
A
------
K
K
L
N
D
A
Q
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
57.08
93%
-24
- C2 -
1BDD
-
A:
[2-59]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
N
K
F
N
K
E
Q
Q
N
A
F
----------------------------
Y
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
G
F
I
Q
S
L
K
-------
D
D
-----------------
P
S
Q
-----------------
S
A
N
L
L
A
E
A
------
K
K
L
N
D
A
Q
A
P
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
56.28
63%
-19
- C2 -
3QWO
-
?
C:
[2-53]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
N
D
E
K
K
L
A
S
N
E
I
A
----
N
L
P
N
L
N
-
E
E
Q
R
S
A
F
L
S
S
I
N
D
D
-----------------
P
S
Q
S
A
N
L
L
A
E
A
K
K
L
N
D
A
Q
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
55.91
93%
-26
- C2 -
1BDC
-
A:
[2-59]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
N
K
F
N
K
E
Q
Q
N
A
F
----------------------------
Y
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
G
F
I
Q
S
L
K
-------
D
D
-----------------
P
S
Q
-----------------
S
A
N
L
L
A
E
A
------
K
K
L
N
D
A
Q
A
P
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
55.77
70%
-16
- C2 -
2KZI
-
?
A:
[3-58]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
F
N
K
E
M
R
N
A
Y
----------------------------
W
E
I
A
L
L
P
N
L
N
N
Q
Q
K
R
A
F
I
R
S
L
Y
-------
D
D
-----------------
P
S
Q
-----------------
S
A
N
L
L
A
E
A
------
K
K
L
N
D
A
Q
A
P
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
61
Fugue
55.52
16%
44
- C1 -
4XVK
4
DPOLN_HUMAN
A:
[1-666]
KKHFCDIRHLD
D
W
A
K
S
Q
L
I
E
M
L
K
Q
AA
A
L
V
I
T
V
M
Y
TDGSTQLG
A
D
Q
T
P
V
S
S
V
R
G
I
V
V
L
V
K
R
Q
A
C
G
PVLEGFVSDD
P
C
I
Y
I
Q
I
E
H
S
A
I
W
D
Q
E
Q
E
A
H
Q
Q
F
A
R
N
V
L
F
Q
T
M
K
C
K
C
P
V
I
C
F
N
A
K
D
F
V
R
I
V
L
Q
F
F
G
N
D
GSWKHVAD
F
I
G
L
D
P
R
I
A
A
W
L
I
D
PSDATP
S
F
E
D
L
V
E
K
Y
C
E
K
S
I
T
V
K
VNSTYG
N
S
S
R
N
I
V
N
Q
N
V
R
E
N
L
K
T
L
Y
R
L
T
M
D
L
C
S
K
L
K
D
Y
G
L
W
Q
L
F
R
TLELPL
I
P
I
L
A
V
M
E
S
H
A
I
Q
V
N
K
E
E
M
E
K
T
S
A
L
L
G
A
R
L
K
E
L
E
Q
E
A
H
F
V
A
G
E
R
F
L
I
T
S
N
N
Q
L
R
E
I
L
FGKL
K
L
H
L
L
S
Y
P
S
T
S
E
A
V
L
N
A
L
R
D
------------------
L
H
P
L
P
K
I
I
L
E
Y
R
Q
V
H
K
I
K
S
T
F
V
D
G
L
L
A
C
M
K
K
G
S
I
S
S
T
W
N
QTGTVTG
R
L
S
A
K
HPNIQGISK
H
P
I
Q
I
T
T
P
K
K
I
L
T
I
S
P
R
A
M
F
V
S
S
K
G
H
T
F
L
A
A
D
F
-----------------
S
Q
I
-----------------
E
L
R
I
L
T
H
L
S
GD
P
E
L
L
K
L
D
D
V
F
S
T
L
T
S
Q
W
K
D
V
P
V
E
Q
V
T
H
A
D
R
E
Q
T
K
K
V
V
Y
A
V
V
Y
GAG
K
E
R
L
A
A
C
L
GV
P
I
Q
E
A
A
Q
F
L
E
S
F
L
Q
K
Y
K
K
I
K
D
F
A
R
A
A
I
A
Q
C
H
Q
T
G
C
V
V
S
I
M
G
R
R
R
P
L
P
R
I
H
A
H
D
Q
Q
L
R
A
Q
A
E
R
Q
A
V
N
F
V
V
Q
G
S
A
A
D
L
C
K
L
A
M
I
H
V
F
T
A
V
A
A
S
H
T
L
T
A
R
L
V
A
Q
I
H
D
E
L
L
F
E
V
E
D
P
Q
I
P
E
C
A
A
L
V
R
R
T
M
E
S
L
E
Q
V
Q
A
L
E
L
Q
L
Q
V
P
L
K
V
S
L
S
A
G
R
S
W
G
H
L
V
P
L
Q
12
PsiBlast_PDB
55.21
89%
-26
- C2 -
1LP1
4
B:
[4-57]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
F
N
K
E
Q
Q
N
A
F
----------------------------
Y
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
A
F
I
Q
S
L
K
-------
D
D
-----------------
P
S
Q
-----------------
S
A
N
L
L
A
E
A
------
K
K
L
N
D
A
Q
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------