@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0251: (2016-03-13 )
MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDENGIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKAKDDNNASAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTEPLNRYEKRLNPTYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFKASIGLL
Atome Classification :
(20 SA)
-.........10........20...-.....30........40........50........60........70--......--.-..80..--..--.--.--..90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240....---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-
M
K
A
L
I
IDDEPL
A
R
N
E
L
T
Y
L
L
N
EIG-
G
F
E
E
I
N
E
A
E
N
V
K
E
T
L
E
A
L
L
INQY
D
I
I
F
L
D
V
N
LMDENG
I
E
L
G
A
K
I
Q
K---MKEP
P
A
--
I
-
I
F
ATAH--D
Q
--
Y
--
A
--
V
Q
A
F
ELNA
T
D
Y
I
L
KPF
G
Q
K
R
I
E
Q
A
V
N
K
V
R
ATKAKDDN
N
A
S
A
I
A
N
D
MSANFDQSLPVEID
D
K
I
H
M
L
K
QQ
N
I
I
G
I
GTHN
G
I
T
T
I
HTTNHKYETT
E
P
L
N
R
Y
E
K
RLN
P
T
Y
F
I
R
I
H
R
S
Y
I
I
N
T
K
H
I
K
E
V
Q
Q
W
FN
Y
T
Y
M
V
I
LTNG
V
K
M
Q
V
G
R
S
F
M
K
D
F
K
A
SIGLL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
89.35
38%
-88
- C1 -
2QV0
-
MRKE_KLEPN
A:
[58-179]
-
M
K
V
I
I
V
E
D
E
F
L
A
Q
Q
E
L
S
W
L
I
N
T
H
S
-
Q
M
E
I
V
G
S
F
D
D
G
L
D
V
L
K
F
L
Q
H
N
K
V
D
A
I
F
L
D
I
N
I
P
S
L
D
G
V
L
L
A
Q
N
I
S
Q
---
F
A
H
K
P
F
--
I
-
V
F
I
T
A
W
--
K
E
--
H
--
A
--
V
E
A
F
E
L
E
A
F
D
Y
I
L
K
P
Y
Q
E
S
R
I
I
N
M
L
Q
K
L
-
T
T
A
W
E
Q
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
85.62
37%
-85
- C1 -
2QV0
-
MRKE_KLEPN
A:
[59-176]
--
K
V
I
I
V
E
D
E
F
L
A
Q
Q
E
L
S
W
L
I
N
T
H
S
-
Q
M
E
I
V
G
S
F
D
D
G
L
D
V
L
K
F
L
Q
H
N
K
V
D
A
I
F
L
D
I
N
I
P
S
L
D
G
V
L
L
A
Q
N
I
S
Q
---
F
A
H
K
P
F
--
I
-
V
F
I
T
A
W
--
K
E
--
H
--
A
--
V
E
A
F
E
L
E
A
F
D
Y
I
L
K
P
Y
Q
E
S
R
I
I
N
M
L
Q
K
L
T
T
A
W
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
82.10
30%
-102
- C1 -
3FFT
5
CHEY_ECOLI
A:
[5-122]
-
L
K
F
L
V
V
D
D
E
S
T
M
R
R
I
V
R
N
L
L
K
E
L
G
--
F
N
N
V
E
E
A
E
D
G
V
D
A
L
N
K
L
Q
A
G
G
Y
G
F
V
I
S
D
W
N
M
P
N
M
D
G
L
E
L
L
K
T
I
R
A
DGA
M
S
A
L
P
V
--
L
M
V
T
A
R
A
K
--
K
E
--
N
--
I
--
I
A
A
A
Q
A
G
A
S
G
Y
V
V
K
P
F
T
A
A
T
L
E
E
K
L
N
K
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
74.08
32%
-97
- C1 -
1TMY
-
CHEY_THEMA
A:
[4-118]
--
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
-
A
-
G
Y
E
V
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
---
I
D
P
N
A
K
--
I
-
I
V
C
S
A
M
--
G
Q
--
Q
--
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
73.97
30%
-104
- C1 -
1NXX
-
?
A:
[3-113]
--
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
---
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
L
----
I
D
G
L
E
V
A
K
T
I
R
K
---
T
S
S
V
P
I
--
L
-
M
L
S
A
K
D
--
S
E
--
F
D
-
K
--
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
N
R
E
L
Q
A
R
V
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54
Fugue
73.02
16%
-73
- C1 -
1W25
4
PLED_CAUCN
A:
[1-454]
S
A
R
I
L
V
V
D
D
I
E
A
N
V
R
L
L
E
A
K
L
T
A
E
Y
---
Y
E
V
S
T
A
M
D
G
P
T
A
L
A
M
A
A
R
D
L
P
D
I
I
L
L
D
V
M
M
P
G
M
D
G
F
T
V
C
R
K
L
K
D
---
D
P
T
T
R
H
I
P
V
-
V
L
I
T
A
L
DG
R
G
--
D
--
R
--
I
Q
G
L
E
S
G
A
S
D
F
L
T
K
P
I
D
D
V
M
L
F
A
R
V
R
S
L
T
R
F
K
L
V
I
D
E
L
R
Q
R
E
A
S
G
R
R
M
G
V
I
A
G
A
-----
A
A
R
L
D
G
L
G
G
R
V
L
I
V
D
---------------
D
N
E
R
Q
A
Q
R
V
A
A
E
L
G
V
E
H
R
P
V
I
E
S
D
P
E
K
A
K
I
S
A
G
G
P
V
D
------
L
V
I
V
N
A
A
A
K
N
F
D
G
L
R
F
T
A
A
L
R
S
E
E
R
T
R
Q
L
P
V
L
A
M
V
D
PDD
R
G
R
M
V
K
A
L
E
I
GVN
D
I
L
S
R
PID
P
Q
E
L
S
A
R
V
K
T
Q
I
Q
R
K
R
Y
T
D
Y
L
R
N
NLDHSLELAVTDQLTGLHN
R
R
Y
M
T
G
Q
L
D
S
L
V
K
R
A
T
L
G
G
D
P
V
S
A
L
L
I
D
I
D
F
F
K
K
I
N
D
TFG
H
D
I
G
D
E
V
L
R
E
F
A
L
R
L
A
S
N
V
RAI
D
L
P
C
RYGGE
E
F
V
V
I
M
P
DTA
L
A
D
A
L
R
I
A
E
R
I
R
M
H
V
S
G
S
P
F
T
V
AHGR
E
M
L
N
V
T
I
S
I
G
V
S
A
T
A
G
EGDT
P
E
A
L
L
K
R
A
D
E
G
V
Y
Q
A
K
A
S
GRN
A
V
V
G
K
A
AH
2
PsiBlast_PDB
72.45
32%
-90
- C1 -
4IGA
3
CHEY_THEMA
A:
[7-121]
--
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
-
A
-
G
Y
E
V
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
---
I
D
P
N
A
K
--
I
-
I
V
C
S
A
M
--
G
Q
--
Q
--
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
72.28
30%
-104
- C1 -
1NXO
-
?
A:
[3-113]
--
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
---
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
L
M
---
I
D
G
L
E
V
A
K
T
I
R
K
---
T
S
S
V
P
I
--
L
-
M
L
S
A
K
D
--
S
E
--
F
D
-
K
--
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
N
R
E
L
Q
A
R
V
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
71.85
25%
-106
- C1 -
3W9S
2
?
A:
[2-117]
--
K
I
L
V
I
E
D
D
A
L
L
L
Q
G
L
I
L
A
M
Q
S
E
G
--
Y
-
V
C
D
G
V
S
T
A
H
E
A
A
L
S
L
A
S
N
H
Y
S
L
I
V
L
D
L
G
L
P
D
E
D
G
L
H
F
L
S
R
M
R
R
---
E
K
M
T
Q
P
--
V
-
L
I
L
T
A
R
--
D
T
L
E
D
--
R
--
I
S
G
L
D
T
G
A
D
D
Y
L
V
K
P
F
A
L
E
E
L
N
A
R
I
R
A
L
L
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
71.63
32%
-97
- C1 -
2TMY
-
CHEY_THEMA
A:
[4-118]
--
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
-
A
-
G
Y
E
V
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
---
I
D
P
N
A
K
--
I
-
I
V
C
S
A
M
--
G
Q
--
Q
--
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
71.60
30%
-100
- C1 -
1NXS
-
?
A:
[3-113]
--
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
---
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
--
L
P
E
I
D
G
L
E
V
A
K
T
I
R
K
---
T
S
S
V
P
I
--
L
-
M
L
S
A
K
D
--
S
E
--
F
D
-
K
--
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
N
R
E
L
Q
A
R
V
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
70.50
32%
-101
- C1 -
4QYW
-
?
A:
[3-117]
--
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
-
A
-
G
Y
E
V
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
-
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
---
I
D
P
N
A
K
--
I
-
I
V
A
S
A
M
--
G
Q
--
Q
--
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
70.18
32%
-91
- C1 -
1MVO
3
PHOP_BACSU
A:
[5-118]
--
K
I
L
V
V
D
D
E
E
S
I
V
T
L
L
Q
Y
N
L
-
E
R
S
-
G
Y
D
V
I
T
-
A
S
D
G
E
E
A
L
K
K
A
E
T
E
K
P
D
L
I
V
L
D
V
M
L
P
K
L
D
G
I
E
V
C
K
Q
L
R
Q
---
Q
K
L
M
F
P
--
I
-
L
M
L
T
A
K
--
D
E
--
E
FD
K
--
V
L
G
L
E
L
G
A
D
D
Y
M
T
K
P
F
S
P
R
E
V
N
A
R
V
K
A
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
70.17
27%
-91
- C1 -
3CU5
-
?
A:
[4-123]
--
R
I
L
I
V
D
D
E
K
L
T
R
D
G
L
I
A
N
I
N
W
K
A
L
S
F
D
Q
I
D
Q
A
D
D
G
I
N
A
I
Q
I
A
L
K
H
P
P
N
V
L
L
T
D
V
R
M
P
R
M
D
G
I
E
L
V
D
N
I
L
K
---
L
Y
P
D
C
S
--
V
-
I
F
M
S
G
Y
--
S
D
KE
Y
--
L
--------
R
A
I
R
Y
V
E
K
P
I
D
P
S
E
I
M
D
A
L
K
Q
S
I
Q
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
69.92
30%
-98
- C1 -
1NXP
1
?
A:
[3-113]
--
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
---
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
L
M
L
P
E
I
D
G
L
E
V
A
K
T
I
R
K
---
T
S
S
V
P
I
--
L
-
M
L
S
A
K
D
--
S
E
--
F
D
-
K
--
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
N
R
E
L
Q
A
R
V
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
HHSearch
69.73
24%
-80
- C1 -
3EUL
-
NARL_MYCTU
A:
[17-134]
--
R
V
V
V
G
D
D
H
P
L
F
R
E
G
V
V
R
A
L
S
L
S
G
-
S
V
N
V
V
G
E
A
D
D
G
A
A
A
L
E
L
I
K
A
H
L
P
D
V
A
L
L
D
Y
R
M
P
G
M
D
G
A
Q
V
A
A
A
V
R
S
---
Y
E
L
P
T
R
--
V
-
L
L
I
S
A
H
--
D
E
P
A
I
--
V
--
Y
Q
A
L
Q
Q
G
A
A
G
F
L
L
K
D
S
T
R
T
E
I
V
K
A
V
L
D
C
A
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
HHSearch
69.13
26%
-98
* C1 *
2PL1
5
PHOP_ECOLI
A:
[2-116]
--
R
V
L
V
V
E
D
N
A
L
L
R
H
H
L
K
V
Q
I
Q
D
A
G
--
H
-
Q
V
D
D
A
E
D
A
K
E
A
D
Y
Y
L
N
E
H
I
P
D
I
A
I
V
D
L
G
L
P
D
E
D
G
L
S
L
I
R
R
W
R
S
---
N
D
V
S
L
P
--
I
-
L
V
L
T
A
R
--
E
S
W
Q
D
--
K
--
V
E
V
L
S
A
G
A
D
D
Y
V
T
K
P
F
H
I
E
E
V
M
A
R
M
Q
A
L
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
69.01
32%
-90
- C1 -
4TMY
1
CHEY_THEMA
B:
[4-118]
--
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
-
A
-
G
Y
E
V
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
---
I
D
P
N
A
K
--
I
-
I
V
C
S
A
M
--
G
Q
--
Q
--
A
MV
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
68.94
30%
-96
- C1 -
2A9P
2
?
A:
[3-113]
--
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
---
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
L
M
L
P
E
I
D
G
L
E
V
A
K
T
I
R
K
---
T
S
S
V
P
I
--
L
-
M
L
S
A
K
D
--
S
E
--
F
D
-
K
--
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
N
R
E
L
Q
A
R
V
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
68.63
29%
-94
- C1 -
1SRR
1
SP0F_BACSU
A:
[5-118]
--
K
I
L
I
V
D
D
Q
S
G
I
R
I
L
L
N
E
V
F
N
K
E
G
--
Y
Q
-
T
F
Q
A
A
N
G
L
Q
A
L
D
I
V
T
K
E
R
P
D
L
V
L
L
D
M
K
I
P
G
M
D
G
I
E
I
L
K
R
M
K
V
---
I
D
E
N
I
R
--
V
-
I
I
M
T
A
Y
--
G
E
L
D
M
--
I
--
Q
E
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------