@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0561: (2016-03-16 )
MSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKLSSDALHQAFN
Atome Classification :
(20 SA)
---------------------------------------------.........10........20........30......-------------..40.......-.----50.--------.......60-...-.-..---...70.....-...80.....-...90..-..---.-..-.--100---..------------....--.110-----.-.---.....120.......130-..--...-.-..-140.....-...150.-.......--160----........--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------MSEKKGF
N
F
N
I
I
KNDPLDGHKGT
N
I
G
S
I
SLDNI
A
P
V
F
-------------
I
D
VANK
E
A
F
I
D
-I----GGM--------
H
A
R
A
K
V
E
K--G
V
K
-W-IT---DKAAVEGDEA-
K
E
Y
W
L
C
W
V
TT-ERNEQGP-
Y
Y
---
A
-
G
L
-
T
--
A
C
Y
---
L
L
------------
V
N
K
A
--
I
R
R
G
-----
Y
-
K
---S
M
P
E
H
V
N
M
M
D
K
SMKH
H
I
--
I
I
--
D
QI-G-DE-
N
-
K
A
I
L
K
D
-
F
L
MNH-D-EG
M
W
KL
S
--
S
------
D
A
L
H
Q
AFN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
80.76
19%
4
- C5 -
4CI7
12
?
A:
[4-470]
G
S
H
K
T
LDG
V
E
T
A
E
Y
S
E
S
Y
L
Q
Y
L
E
D
V
K
N
GDTAKYNGVIPFP
H
E
M
E
G
T
T
L
R
K
----
S
S
V
A
Y
N
P
M
D
L
G
L
T
T
P
A
K
N
Q
G
S
L
N
T
A
W
S
F
-------------
S
G
M
S
T
L
E
A
Y
L
K
-
L
----
K
G
Y
GTYDLS
E
E
H
L
R
W
W
A
T
G
--
G
K
Y
G
W
N
L
D
---
D
M
S
G
S
S
N
V
T
A
-
I
G
Y
L
T
A
W
A
G
P
-
K
L
E
K
D
I
P
-
Y
N
-------------------------------------
L
K
S
E
-----
A
-
Q
---
G
A
T
K
P
S
N
M
-
D
T
A
P
T
Q
F
N
--
V
T
--
D
V
V
-
R
L
N
K
-
D
-
K
E
T
V
K
N
-
A
I
M
Q
Y
-
G
-
S
----
V
T
--
S
------
G
Y
A
H
Y
S
T
Y
FNKDET
A
Y
N
C
TNKRAPLN
H
A
V
A
IVGWDDNYSKDNFASDVKPE
S
N
G
A
W
L
V
K
S
SWGEFNSMKG
F
F
W
I
S
YEDKTLLTDTD
N
Y
A
M
K
S
V
S
K
P
DSD
K
K
M
Y
Q
LEYAGL
S
K
I
M
S
N
K
V
T
A
A
N
V
F
DFSRDSEKLD
S
V
M
F
E
T
DSVG
A
K
Y
E
V
Y
Y
A
P
V
V
NGVPQNN
S
M
T
K
L
A
S
G
T
VSYS
G
Y
I
N
V
P
TNSYSLPK
G
K
G
A
I
V
V
V
I
D
NTANPNR
E
K
S
T
L
A
Y
E
T
D
I
D
GYYL
Y
E
A
K
A
N
L
GE
S
Y
I
L
Q
NNKFEDINTYSEFSPCNFV
I
K
A
I
T
K
T
S
39
Fugue
76.09
24%
-15
* C5 *
4Q7O
8
?
A:
[4-136]
-----------------------------------------------
M
K
N
N
I
F
L
N
L
N
K
K
S
I
N
N
N
H
---
F
V
I
S
I
F
F
E
T
I
Y
Q
F
E
-------------
T
K
D
T
L
L
E
C
F
K
N
-
I
T
T
TG
H
F
G
--------
V
I
G
A
Q
Y
E
K
I
D
A
T
R
-
W
-
I
G
---
D
Y
E
E
V
N
G
-------------
F
-
E
Y
I
D
K
A
P
--------------
S
I
Y
---
F
S
------------
V
G
----------------------------
D
D
F
N
P
E
E
L
--
I
I
P
I
N
L
A
-
Y
-
H
Y
-
F
-
N
I
A
I
S
D
-
F
L
I
A
H
-
P
-
E
Y
Q
K
K
C
K
--
E
------
I
Q
--
K
T
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
70.89
16%
-29
* C7 *
3EBK
-
BLG4_BLAGE
A:
[7-176]
----------------------------------------------
N
E
D
C
F
R
H
E
S
L
V
P
N
L
D
Y
E
R
F
R
G
S
W
I
I
A
A
G
T
S
E
A
L
T
Q
Y
-------------
K
C
W
I
D
R
F
S
Y
D
D
-
A
----
L
V
S
--------
K
Y
T
D
S
Q
G
K
--
N
R
T
-
T
-
I
R
---
G
R
T
K
F
E
G
N
----
K
F
T
I
D
Y
N
D
K
-
G
K
A
F
S
A
P
-
Y
S
---
V
-
L
A
-
T
DY
E
N
Y
---
A
I
------------
V
E
G
C
--
P
A
A
A
NG
H
V
I
Y
-
V
---
Q
L
R
M
T
L
R
R
F
H
P
K
M
L
Q
H
Y
--
T
L
--
D
Q
V
-
N
-
Q
N
-
K
-
K
A
I
E
E
D
-
L
K
H
--------
F
N
L
K
--
Y
------
E
D
L
H
S
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
64.81
15%
-37
* C4 *
2SCU
-
SUCC_ECOLI
B:
[245-385]
----------------------------------------------
A
A
Q
W
E
L
N
Y
V
A
L
D
G
N
I
G
C
M
V
N
G
A
G
L
A
M
G
T
M
D
I
V
K
L
H
G
-------------
G
E
P
A
N
---
F
L
D
-
V
----
G
G
G
--------
A
T
K
E
R
V
T
E
--
A
F
K
-
I
-
I
L
---
S
D
D
K
V
K
-------------------------------
A
V
-
L
--
V
N
I
F
G
G
I
V
------------
R
C
D
L
--
I
A
D
G
-----
I
-
I
---
G
A
V
A
E
V
G
V
N
V
P
--------
V
V
--
V
R
L
-
E
-
G
N
-
N
-
A
E
L
G
A
K
-
K
L
A
D
S
-
G
-
L
N
I
I
A
A
K
G
L
T
------
D
A
A
Q
Q
V
V
A
A
V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
62.75
28%
-44
- C6 -
3A1E
1
COPA_ARCFU
A:
[45-123]
----------------------------------------------------------------------------------------------------------------------------------
K
--
G
K
P
-
E
-
V
T
---
D
L
V
P
L
N
G
D
E
R
-
E
L
L
R
L
A
A
I
A
E
-
R
R
S
E
Q
P
I
-
A
E
---
A
--------------
I
------------
V
K
K
A
--
L
E
H
G
-----
I
-
E
L
--
G
E
P
E
K
V
E
V
I
---
A
G
E
G
V
--
V
A
--
D
G
I
-
L
-
V
G
-
N
-
K
R
L
M
E
D
-
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
62.69
13%
-8
- C4 -
2VQZ
1
PB2_I75A3
A:
[3-165]
------------------------------------------------
S
S
S
F
S
F
G
G
F
T
F
K
R
T
S
G
S
S
I
K
R
E
E
E
V
L
T
G
N
L
Q
T
L
K
-------------
I
R
V
H
E
G
Y
E
E
F
T
M
V
----
G
K
---------
R
A
T
A
I
L
R
K
--
A
T
R
-
R
-
L
V
----
Q
L
I
V
S
G
K
D
E
-
Q
S
I
A
E
A
I
I
V
A
M
V
F
S
Q
E
D
C
M
I
K
---
A
-
V
R
-
G
--
D
L
N
---
F
V
------------
N
R
A
N
--
Q
R
L
N
-----
P
M
H
---
Q
L
L
R
H
F
Q
K
D
A
K
V
L
F
Q
N
W
--
G
I
--
E
H
I
-
D
-
N
V
M
G
M
V
G
V
L
P
D
M
T
P
S
T
E
M
S
M
R
G
I
R
V
S
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
61.55
16%
-41
- C4 -
4TYZ
1
?
A:
[1-109]
---------------------------------------------------------------------------------------------------------------------------------
N
I
--
E
G
V
-
F
-
R
K
---
S
F
P
D
L
A
G
E
T
L
L
D
S
F
N
C
A
W
V
E
G
-
S
A
L
K
Q
G
Y
-
L
F
I
T
P
H
-
W
L
-
C
--
F
Q
S
---
T
L
------------
A
A
A
H
--
F
S
I
E
-----
Y
-
D
---
E
I
K
D
I
I
K
S
K
S
V
K
M
F
E
N
A
--
I
E
--
V
K
T
-
H
-
L
N
-
D
-
T
I
F
L
T
N
-
F
L
-
Q
R
-
D
-
Q
A
Y
S
A
L
M
--
S
------
Q
W
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
57.95
8%
-52
- C7 -
1SKX
1
NR1I2_HUMAN
A:
[25-313]
-----LT
E
E
Q
R
M
M
I
R
E
L
M
D
A
Q
M
K
T
FDTTFSHFKNFRLPGVK
V
S
L
Q
L
R
G
E
D
G
S
V
W
N
Y
K
P
P
I
F
S
L
L
P
H
M
A
D
M
S
T
Y
M
F
K
G
I
I
S
F
A
K
V
I
S
Y
F
R
D
LP
I
E
D
Q
I
S
L
L
K
G
A
A
F
E
-
L
----
C
Q
L
--------
R
F
N
T
V
F
N
A
--
E
T
G
-
T
-
W
E
CGR
L
S
Y
C
L
E
L
L
L
E
-
P
M
L
K
F
H
Y
M
L
K
-
K
L
Q
L
H
E
E
-
E
Y
---
V
-
L
M
-
Q
--
A
I
S
---
L
F
SPDRPGVLQ
H
R
V
V
D
Q
L
--
Q
E
Q
F
-----
A
-
I
---
T
L
K
S
Y
I
E
C
N
R
P
Q
P
A
H
R
F
--
L
F
--
L
K
I
---
M
A
-
M
-
L
T
E
L
R
S
-
I
N
A
Q
H
-
T
-
Q
R
L
L
R
I
Q
--
D
I
HPFAT
P
L
M
Q
E
L
F
G
I-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
54.12
10%
-25
- C5 -
3P9A
-
TERS_BPP22
A:
[1-139]
---------------------------------------------
M
A
A
P
K
G
N
R
F
W
E
A
R
S
S
H
--
G
R
N
P
K
F
E
S
P
E
A
L
W
A
A
C
C
E
Y
-------------
F
E
W
V
E
A
N
P
L
W
E
-
M
----
K
A
F
--------
S
Y
Q
G
E
---------------------------------
V
I
Q
E
-
P
I
A
K
M
R
A
-
M
T
---
I
-
T
G
-
L
--
T
L
F
---
I
D
------------
V
T
L
E
--
T
W
R
T
-----
Y
-
R
LR
E
D
L
S
E
V
V
T
R
A
E
Q
V
I
Y
D
Q
K
--
F
S
--
G
A
A
A
D
-
L
L
-
N
-
A
N
I
I
A
R
-
D
L
G
L
K
-
E
-
Q
S
Q
V
E
D
V
--
T
------
P
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
50.16
28%
-72
- C6 -
1X6I
-
CPTB_ECOLI
A:
[12-56]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
C
R
R
G
-----
M
-
R
----------
E
L
D
I
S
I
M
P
F
F
E
H
E
Y
--
D
S
L
-
S
-
D
D
-
E
-
K
R
I
F
I
R
-
L
L
E
C
D
-
D
-
P
D
L
F
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
49.27
9%
-41
* C8 *
2BQX
-
IPYR_HELPY
A:
[64-141]
--------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
-
D
P
V
D
A
L
V
L
S
D
-
V
A
F
Q
A
G
S
-
V
V
---
K
-
A
R
L
V
--
G
V
L
---
N
M
------------
E
D
-
E
--
S
G
M
D
-----
E
-
K
---
L
I
A
L
P
I
D
K
I
D
P
T
H
S
Y
V
K
--
D
I
--
D
D
L
-
S
-
K
H
-
T
-
L
D
K
I
K
H
-
F
F
E
T
Y
-
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
46.94
26%
-16
- C6 -
3SDE
3
PSPC1_HUMAN
A:
[81-138]
------------------------------------------------------
T
I
L
K
S
R
P
L
R
I
R
F
A
T
H
G
A
A
L
T
V
K
N
L
S
P
V
V
-------------
S
N
E
L
L
E
Q
A
F
S
Q
-
F
----
G
--------------
P
V
E
K
--
A
V
V
-
V
-
V
D
---
D
R
G
R
A
T
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
44.12
12%
-43
- C8 -
1QEZ
1
IPYR_SULAC
A:
[63-140]
---------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
D
P
L
D
V
L
V
I
T
N
-
Y
Q
L
Y
P
G
S
-
V
I
---
E
V
R
P
-
I
--
G
I
L
---
Y
M
------------
K
D
-
E
--
E
G
E
D
-----
A
-
K
---
I
V
A
V
P
K
D
K
T
D
P
S
F
S
N
I
K
--
D
I
--
N
D
L
-
P
-
Q
A
-
T
-
K
N
K
I
V
H
-
F
F
E
H
Y
-
K
-
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
43.87
29%
-12
- C6 -
4DR0
1
RIR2_BACSU
A:
[51-103]
-----------------------------------------------------------------------------------------------------------------------------------------
W
-
L
P
---
E
E
I
A
L
N
G
D
------
L
L
T
W
K
Y
L
-
G
K
N
E
Q
D
T
-
Y
M
---
K
-
V
L
-
A
--
G
L
T
---
L
L
------------
D
T
E
Q
--
G
N
T
G
-----
M
-
P
---
I
V
A
E
H
V
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
43.58
9%
-71
- C6 -
2FW5
2
?
A:
[19-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
T
R
---
T
-
E
C
-
S
--
A
C
H
---
M
A
------------
Y
P
A
A
LL
P
A
R
S
-----
W
-
T
---
A
L
---
M
A
D
L
P
N
H
F
G
E
D
A
-------
S
L
-
D
-
E
A
-
S
-
R
G
Q
I
E
S
-
Y
L
V
A
N
-
A
-
A
D
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
42.93
26%
19
- C6 -
3ILS
-
PKSL1_ASPPA
A:
[2006-2066]
-----------------------------------------------------------------------------
L
I
P
H
F
-------------
T
A
V
V
D
V
M
L
D
Y
K
-
L
----
A
P
L
--------
H
A
R
R
M
P
K
V
--
G
I
V
-
W
-
A
A
---
D
T
V
M
D
E
R
D
A
P
-
K
M
K
G
M
H
F
M
I
Q
-
K
R
T
E
F
G
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
42.92
9%
-61
- C6 -
2FWT
1
?
A:
[8-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
T
R
---
T
-
E
C
-
S
--
A
C
H
---
M
A
------------
Y
P
A
A
LL
P
A
R
S
-----
W
-
T
---
A
L
---
M
A
D
L
P
N
H
F
G
E
D
A
-------
S
L
-
D
-
E
A
-
S
-
R
G
Q
I
E
S
-
Y
L
V
A
N
-
A
-
A
D
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
41.22
11%
-76
- C6 -
1PUZ
-
?
A:
[23-59]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
L
I
F
G
R
F
M
EK
E
F
--
E
H
L
-
S
-
D
K
-
E
-
L
S
E
F
S
E
-
I
L
E
F
Q
-
D
-
Q
E
L
L
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
39.89
17%
-72
- C6 -
2JR5
-
Y2471_VIBCH
A:
[14-57]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
R
R
G
-----
M
-
L
----------
E
L
D
V
V
I
M
P
F
F
E
E
C
F
--
D
S
L
-
T
-
E
S
-
E
-
Q
D
D
F
V
A
-
L
L
E
S
D
-
D
-
P
D
L
F
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_CBE
38.51
31%
-43
- C6 -
4DAJ
1
D:
[413-441]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
W
L
C
Y
I
N
S
-
T
V
N
---------------
P
--
V
C
Y
---
A
L
------------
C
N
K
T
--
F
R
T
T
-----
F
-
K
---
T
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------