@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0631: (2016-03-17 )
MRTLNKDEHNYIKQIANIHETLLSQAESNYKCTKLSIALRYEMICSRLEHTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIELLYVEPQFRKLGIATQLKIALEKWAKTMNAKRISSTIHKNNLPMISLNKDLGYQVSHVKMYKDID
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.-.-.-...-..30...---.....40--.......--.50----.--........60........-----.70.-.----.------------------------------.-------....80........90........-100.......110........120...-------....130.......140.....--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------MRTLNK
D
E
H
N
Y
I
K
Q
I
A
N
I
H
E
T
L
-
L
-
S
-QAE-SN
Y
K
C
T
K
---
L
S
I
A
L
R
Y
--
E
M
I
C
S
R
L
--EH-----T--N
D
K
I
Y
I
Y
EN-EG
Q
L
I
A
F
I
-----WGHF-S----N------------------------------E-------
K
S
M
V
N
I
E
L
L
Y
VE
P
Q
F
R
KLG
I
A
T
Q
L
-
K
I
A
L
E
K
W
A
K
T
M
-
N
A
K
R
I
S
S
T
IHKNNL
P
-------
M
I
S
LNKDLG
Y
Q
V
S
H
V
K
M
YKDID--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
94.45
95%
-148
- C1 -
2AJ6
2
?
A:
[14-130]
---------------------------------------------------------------------------------------------------------------------------------------------------
R
T
L
N
K
D
E
H
N
Y
I
K
Q
I
A
N
I
H
E
T
L
-
L
-
S
-
Q
V
E
-
S
N
Y
K
C
T
K
---
L
S
I
A
L
R
Y
--
E
M
I
C
S
R
L
--
E
H
-----
T
--
N
D
K
I
Y
I
Y
E
N
-
E
G
Q
L
I
A
F
I
-----
W
G
H
F
-
S
----
N
------------------------------
E
-------
K
S
M
V
N
I
E
L
L
Y
V
E
P
Q
F
R
K
L
G
I
A
T
Q
L
-
K
I
A
L
E
K
W
A
K
T
M
-
N
A
K
R
I
S
N
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
78.14
85%
-128
- C1 -
2AJ6
2
?
A:
[16-130]
--------------------------------------------------------------------------------------------------------------------------------------------------
L
N
K
D
E
H
N
Y
I
K
Q
I
A
N
I
H
E
T
L
L
S
------
Q
V
E
-
S
N
Y
K
C
T
K
---
L
S
I
A
L
R
Y
--
E
M
I
C
S
R
L
--
E
H
-----
T
--
N
D
K
I
Y
I
Y
E
N
-
E
G
Q
L
I
A
F
I
-----
W
G
H
F
-
S
----
N
------------------------------
E
-------
K
S
M
V
N
I
E
L
L
Y
V
E
P
Q
F
R
K
L
G
I
A
T
Q
L
-
K
I
A
L
E
K
W
A
K
T
M
-
N
A
K
R
I
S
N
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
59.95
21%
-131
- C1 -
3JVN
1
?
A:
[5-136]
--------------------------------------------------------------------------------------------------------------------------------------------------
I
R
R
A
K
E
I
D
L
Y
C
L
N
S
L
M
Y
K
L
H
D
E
-
H
H
Q
-
Q
C
P
-
D
---------------
E
--
K
S
I
A
R
Y
L
--
D
D
-----
P
--
E
C
M
V
Y
V
A
E
M
-
D
D
V
I
I
G
F
I
-----
T
G
H
F
-
C
----
E
------------------------------
L
ISTVS
K
L
V
M
M
A
T
I
D
E
L
Y
I
E
K
E
Y
R
R
E
G
V
A
E
Q
L
-
M
M
R
I
E
Q
E
L
K
D
Y
-
G
V
K
E
I
F
V
E
V
W
--
N
K
G
-------
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
Fugue
57.52
13%
-107
- C1 -
1P0H
2
MSHD_MYCTU
A:
[6-313]
A
L
D
W
R
SALT
A
D
E
Q
R
S
V
R
A
L
V
T
A
T
T
A
V
D
GVAPVG
E
Q
V
L
R
E
L
GQQR
T
E
H
L
L
V
A
G
SRPGGPII
G
Y
L
N
L
S
P
PG
G
A
M
A
E
L
V
V
HPQSRRRG
I
G
T
A
M
A
R
A
A
L
A
K
T
A
GR
N
Q
F
W
A
H
GTL
D
P
A
R
A
T
A
S
A
L
GLVGV
R
E
L
I
Q
M
R
R
P
LRD
I
P
E
P
T
I
P
D
G
V
V
I
R
T
Y
A
G
T
S
D
D
A
E
L
L
R
V
N
N
A
A
-
F
-
A
-
G
H
P
-
E
Q
G
G
W
T
A
---
V
Q
L
A
E
R
R
--
G
E
A
W
------
F
-----
D
--
P
D
G
L
I
L
A
F
G
-
D
G
R
L
L
G
F
H
-----
W
T
K
V
H
P
----
D
------------------------------
H
-------
P
G
L
G
E
V
Y
V
L
G
V
D
P
A
A
Q
R
R
G
L
G
Q
M
L
T
S
I
G
I
V
S
L
A
R
R
L
-
V
E
P
A
V
L
L
Y
V
E
S
D
N
V
A
-------
A
V
R
T
Y
Q
S
L
G
F
T
T
Y
S
V
D
T
A
Y
A
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
HHSearch
52.84
18%
-95
- C1 -
1S3Z
4
AAC6_SALEN
A:
[23-161]
--------------------------------------------------------------------------------------------------------------------------------------------------
I
R
Q
M
N
K
T
H
L
E
H
W
R
G
L
R
K
Q
L
W
-----
P
-
G
H
P
-------------
D
D
A
H
L
--
A
D
G
E
E
I
L
--
Q
A
-----
D
--
H
L
A
S
F
I
A
M
A
-
D
G
V
A
I
G
F
A
-----
D
A
S
I
-
R
----
H
DYVNGCD-----------------------
S
-------
S
P
V
V
F
L
E
G
I
F
V
L
P
S
F
R
Q
R
G
V
A
K
Q
L
-
I
A
A
V
Q
R
W
G
T
N
K
-
G
C
R
E
M
A
S
D
T
S
P
E
N
T
I
-------
S
Q
K
V
H
Q
A
L
G
F
E
E
T
E
R
V
I
F
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
52.28
20%
-110
- C1 -
4PV6
1
?
C:
[11-134]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
I
R
E
F
S
-
P
-
K
-
D
I
E
-
S
V
Y
R
I
A
Q
---
T
S
L
T
E
Y
Y
T
Q
A
L
I
L
D
L
H
--
R
E
-----
W
--
P
E
S
F
M
V
Y
T
V
-
A
G
S
V
V
G
F
I
-----
V
G
S
--
K
----
Y
------------------------------
S
-------
R
T
E
A
R
I
L
L
F
A
V
D
E
R
F
R
R
M
G
V
G
S
A
L
-
M
D
A
F
L
S
L
C
R
E
Q
-
N
M
L
S
V
R
L
E
V
R
T
D
N
D
E
-------
A
I
R
F
Y
K
K
Y
G
F
V
I
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
51.94
15%
-114
- C1 -
2FIA
-
?
A:
[3-139]
--------------------------------------------------------------------------------------------------------------------------------------------------
I
R
V
A
D
E
K
E
L
P
M
I
L
Q
F
L
T
E
V
K
A
Y
-
M
-
D
-
V
V
G
I
T
Q
W
T
K
D
-------
Y
P
S
Q
--
G
D
I
Q
E
D
I
--
T
K
---------
K
R
L
Y
L
L
V
H
-
E
E
M
I
F
S
M
A
-----
T
F
C
M
-
E
----
Q
------------------------------
E
-------
Q
D
F
V
W
L
K
R
F
A
T
S
P
N
Y
I
A
K
G
Y
G
S
L
L
-
F
H
E
L
E
K
R
A
V
W
E
-
G
R
R
K
M
Y
A
Q
T
N
H
T
N
H
R
-------
M
I
R
F
F
E
S
K
G
F
T
K
I
H
E
S
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
49.82
18%
-114
- C1 -
3T9Y
4
?
A:
[8-149]
--------------------------------------------------------------------------------------------------------------------------------------------------
T
R
L
F
N
N
S
D
F
E
K
L
N
Q
L
C
K
L
Y
D
D
-------
L
---
G
Y
P
------
T
N
E
N
D
L
K
--
K
R
L
K
K
I
T
--
N
H
-----
D
--
D
Y
F
L
L
L
L
I
K
-
E
N
K
I
I
G
L
S
-----
G
M
C
K
-
M
M
F
YE
K
------------------------------
N
-------
A
E
Y
M
R
I
L
A
F
V
I
H
S
E
F
R
K
K
G
Y
G
K
R
L
-
L
A
D
S
E
E
F
S
K
R
L
-
N
C
K
A
I
T
L
N
S
G
N
R
N
-----------------
G
Y
V
S
N
T
S
G
F
T
K
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
47.91
10%
-105
- C1 -
2WPX
2
?
A:
[5-338]
---------------------------------------------------------------------------------------------------------------------------------------------A
G
E
L
E
F
V
P
L
A
A
N
D
D
E
T
V
G
Q
W
L
D
L
M
A
L
A
-
A
-
E
-
T
G
P
-
R
A
A
P
P
C
N
---
V
D
M
V
G
S
L
--
R
---
F
A
P
--
P
A
-----
T
--
A
L
D
D
W
V
V
R
S
-
G
G
R
V
V
G
A
L
-----
R
L
A
L
-
P
----
D
------------------------------
G
-------
A
P
T
A
R
V
D
Q
L
L
V
H
P
G
R
R
R
R
G
I
G
R
A
L
-
W
A
H
A
R
E
L
A
R
K
H
-
D
R
T
T
L
T
A
T
V
V
E
S
L
P
S
GPAQDP
G
P
A
A
F
A
A
A
M
G
A
H
R
S
D
I
P
A
G
T
H
Q
W
L
D
LDRHDPLADGVPAVPAG
Y
S
L
V
T
W
G
TITPDEY
A
V
P
V
S
E
LELRAAQE
V
R
T
S
Y
A
R
Q
F
E
T
M
R
V
G
R
G
R
R
A
Y
H
T
G
A
V
HDATGALA
G
Y
T
S
V
S
K
T
TGNPA
Y
A
L
Q
G
M
T
V
V
H
REHRGHA
L
G
T
L
L
K
L
A
N
L
E
Y
V
L
R
H
E
PEVR
L
V
E
T
A
N
AEDN
H
P
M
I
A
V
N
A
A
L
G
F
E
P
Y
D
R
W
V
F
W
T
A
E
AGPS
41
HHSearch
47.11
16%
-106
- C1 -
3DSB
3
?
A:
[9-148]
--------------------------------------------------------------------------------------------------------------------------------------------------
I
R
E
A
R
M
D
D
L
D
T
I
A
K
F
N
Y
N
L
A
K
------
E
T
E
-
G
K
----
E
---
L
D
M
D
V
L
T
--
K
G
V
K
A
L
L
--
L
D
-----
E
R-
K
G
K
Y
H
V
Y
T
V
-
F
D
K
V
V
A
Q
I
-----
M
Y
T
Y
-
E
----
W
S
DWR--------------------------
N
-------
G
N
F
L
W
I
Q
S
V
Y
V
D
K
E
Y
R
R
K
G
I
F
N
Y
L
-
F
N
Y
I
K
N
I
C
D
K
D
E
N
I
V
G
M
R
L
Y
V
E
K
E
N
I
N
-------
A
K
A
T
Y
E
S
L
N
M
Y
E
C
D
Y
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
45.89
18%
-84
- C1 -
1ON0
2
YYCN_BACSU
A:
[5-155]
--------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
M
Q
T
E
E
F
R
S
Y
L
T
Y
T
T
K
H
Y
A
E
-
E
-
K
-
V
K
A
-
G
T
W
L
P
E
D
A
Q
L
L
S
K
Q
V
F
T
--
D
L
L
P
R
G
L
--
E
T
-----
P
--
H
H
H
L
W
S
L
K
L
N
E
K
D
I
V
G
W
L
-----
W
I
H
A
-
E
----
P
EH----------------------------
P
-------
Q
Q
E
A
F
I
Y
D
F
G
L
Y
E
P
Y
R
G
K
G
Y
A
K
Q
A
-
L
A
A
L
D
Q
A
A
R
S
M
-
G
I
R
K
L
S
L
H
V
F
A
H
N
Q
T
-------
A
R
K
L
Y
E
Q
T
G
F
Q
E
T
D
V
V
M
S
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
45.44
26%
-110
- C1 -
3PP9
3
?
A:
[75-160]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
Q
I
I
Y
I
A
L
L
-
H
N
Q
I
I
G
F
I
V
L
K
K
N
W
N
N
Y
-
A
----
Y
-------------------------------------------
I
E
D
I
T
V
D
K
K
Y
R
T
L
G
V
G
K
R
L
-
I
A
Q
A
K
Q
W
A
K
E
G
-
N
M
P
G
I
M
L
E
T
Q
N
N
N
V
A
-------
A
C
K
F
Y
E
K
C
G
F
V
I
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
45.38
19%
-105
- C1 -
3I9S
3
?
A:
[26-168]
--------------------------------------------------------------------------------------------------------------------------------------------------
I
K
R
V
D
K
H
H
C
L
D
L
V
G
I
F
I
E
L
E
R
Y
----------
Y
F
G
D
K
A
---
A
S
E
Q
D
L
A
--
N
Y
L
S
H
Q
V
FS
E
H
-----
S
--
G
V
K
V
I
A
A
V
E
-
H
D
K
V
L
G
F
A
-----
T
Y
T
I
-
M
----
F
PAPK--------------------------
L
-------
S
G
Q
M
Y
M
K
D
L
F
V
S
S
S
A
R
G
K
G
I
G
L
Q
L
-
M
K
H
L
A
T
I
A
I
T
H
-
N
C
Q
R
L
D
W
T
A
E
S
T
N
P
T
-------
A
G
K
F
Y
K
S
I
G
A
S
L
I
R
E
K
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
HHSearch
45.03
17%
-92
- C1 -
1U6M
2
?
A:
[4-175]
--------------------------------------------------------------------------------------------------------------------------------------------------
I
R
S
A
T
K
E
D
G
Q
A
I
A
R
L
V
L
V
I
L
K
------
D
M
E
-
L
P
I
L
E
-
E
---
V
S
E
E
Q
M
I
--
D
L
L
A
E
A
T
--
A
Y
PTYRY
G
--
Y
Q
R
I
L
V
Y
E
H
-
A
G
E
V
A
G
I
A
-----
V
G
Y
P
-
A
----
E
DEKIID
E
P
L
R
E
V
F
K
K
H
GLAEDVRLFIEEET
L
-------
P
N
E
W
Y
L
D
T
I
S
V
D
E
R
F
R
G
M
G
I
G
S
K
L
-
L
D
A
L
P
E
V
A
K
A
S
-
G
K
Q
A
L
G
L
N
V
D
F
D
N
P
G
-------
A
R
K
L
Y
A
S
K
G
F
K
D
V
T
T
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
44.55
25%
-106
- C1 -
3PP9
3
?
A:
[73-164]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-----
P
--
N
Q
I
I
Y
I
A
L
L
-
H
N
Q
I
I
G
F
I
-----
V
L
K
K
-
N
----
W
--------------------------------------
N
N
Y
A
Y
I
E
D
I
T
V
D
K
K
Y
R
T
L
G
V
G
K
R
L
-
I
A
Q
A
K
Q
W
A
K
E
G
-
N
M
P
G
I
M
L
E
T
Q
N
N
N
V
A
-------
A
C
K
F
Y
E
K
C
G
F
V
I
G
G
F
D
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
44.26
13%
-92
- C1 -
2CY2
1
?
A:
[3-152]
--------------------------------------------------------------------------------------------------------------------------------------------------
I
R
R
A
G
L
E
D
L
P
G
V
A
R
V
L
V
D
T
W
R
A
T
Y
-
R
G
V
V
P
-
E
A
F
L
E
-
G
---
L
S
Y
E
G
Q
A
--
E
R
W
A
Q
R
L
--
K
T
-----
P
TW
P
G
R
L
F
V
A
E
S
E
S
G
E
V
V
G
F
A
-----
A
F
G
P
-
D
----
R
------------------------------
A
SGFP---
G
Y
T
A
E
L
W
A
I
Y
V
L
P
T
W
Q
R
K
G
L
G
R
A
L
-
F
H
E
G
A
R
L
L
Q
A
E
-
G
Y
G
R
M
L
V
W
V
L
K
E
N
P
K
-------
G
R
G
F
Y
E
H
L
G
G
V
L
L
G
E
R
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
43.99
18%
-92
- C1 -
1UFH
-
YYCN_BACSU
A:
[5-156]
--------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
M
Q
T
E
E
F
R
S
Y
L
T
Y
T
T
K
H
Y
A
E
-
E
-
K
-
V
K
A
-
G
T
W
L
P
E
D
A
Q
L
L
S
K
Q
V
F
T
--
D
L
L
P
R
G
L
--
E
T
-----
P
--
H
H
H
L
W
S
L
K
L
N
E
K
D
I
V
G
W
L
-----
W
I
H
A
-
E
----
P
EH----------------------------
P
-------
Q
Q
E
A
F
I
Y
D
F
G
L
Y
E
P
Y
R
G
K
G
Y
A
K
Q
A
-
L
A
A
L
D
Q
A
A
R
S
M
-
G
I
R
K
L
S
L
H
V
F
A
H
N
Q
T
-------
A
R
K
L
Y
E
Q
T
G
F
Q
E
T
D
V
V
M
S
K
K
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
42.89
10%
-100
- C1 -
2DXQ
6
?
A:
[8-148]
--------------------------------------------------------------------------------------------------------------------------------------------------
L
R
A
A
G
P
G
D
L
P
G
L
L
E
L
Y
Q
V
L
N
-----
P
-
S
D
P
--
E
--------
L
T
T
Q
E
A
G
--
A
V
F
A
A
M
L
--
A
Q
-----
P
--
G
L
T
I
F
V
A
T
E
-
N
G
K
P
V
A
T
A
-----
T
L
L
I
-
V
----
P
N
LTRA-------------------------
A
-------
R
P
Y
A
F
I
E
N
V
V
T
L
E
A
R
R
G
R
G
Y
G
R
T
V
-
V
R
H
A
I
E
T
A
F
G
A
-
N
C
Y
K
V
M
L
L
T
G
R
H
D
P
A
-------
V
H
A
F
Y
E
S
C
G
F
V
Q
N
K
T
G
F
Q
I
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
42.62
23%
-91
- C1 -
4QUS
2
YPEA_ECOLI
A:
[34-128]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
R
K
M
--
N
H
-----
D
--
V
S
L
F
L
V
A
E
V
-
N
G
D
V
V
G
T
V
-----
M
G
G
Y
-
D
----
G
------------------------------
H
-------
R
G
--
S
A
Y
Y
L
G
V
H
P
E
F
R
G
R
G
I
A
N
A
L
-
L
N
R
L
E
K
K
L
I
A
R
-
G
C
P
K
I
Q
I
N
V
P
E
D
N
D
M
-------
V
L
G
M
Y
E
R
L
G
Y
E
H
A
D
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
41.81
24%
-97
- C1 -
1MK4
-
YQJY_BACSU
A:
[36-126]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
--
E
H
-----
F
--
Q
D
T
S
F
I
T
S
E
-
H
N
S
M
T
G
F
L
-----
I
G
F
Q
-
S
Q---
S
------------------------------
D
-------
P
E
T
A
Y
I
H
F
S
G
V
H
P
D
F
R
K
M
Q
I
G
K
Q
L
-
Y
D
V
F
I
E
T
V
K
Q
R
-
G
C
T
R
V
K
C
V
T
S
P
V
N
K
V
-------
S
I
A
Y
H
T
K
L
G
F
D
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------