@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0907: (2016-03-20 )
MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDNPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTDVNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL
Atome Classification :
(18 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.......---------------.20....-..---..30..-....-----..40........50.-----......---.60........70--.---.......80---......-.--------.90......---..100.......110-.........120---......-..130.......140....-...150....--------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MS
R
K
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-
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-----
Y
V
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HRENY
E
A
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-----
Y
Y
KNSI---DNPIVDG
A
C
Y
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A
--
L
---
P
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---
F
ESEL
P
-
F
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W
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YDEN
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---
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M
K
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LS
I
P
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---
L
V
A
A
A
L
E
V
T
D
V
----
N
I
FKPS-G
F
T
MGMNNW
N
I
A
Q
M
R
I
F
W
Q
-
Y
T
A
I
I
R
KEAL--------------------------------------------------------
2
HHSearch
98.77
99%
-168
- C4 -
3KBY
5
?
A:
[2-145]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
M
F
N
M
---------------
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-
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---
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-----
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-----
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K
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---
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--
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-
F
--------
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---
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Y
---
L
V
A
A
A
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E
V
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D
V
----
N
I
F
K
P
S
-
G
F
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M
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M
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A
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M
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I
F
W
Q
-
Y
T
A
I
I
R
K
E
A
L
--------------------------------------------------------
1
PsiBlast_PDB
98.11
95%
-168
- C4 -
3KBY
5
?
A:
[5-145]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
N
M
---------------
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-
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---
D
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-----
Y
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-----
Y
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K
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---
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----
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-
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I
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W
Q
-
Y
T
A
I
I
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A
L
--------------------------------------------------------
21
Fugue
52.63
13%
-77
* C2 *
4M91
1
TUSC3_HUMAN
A:
[2-154]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
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E
N
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K
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Q
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---
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--
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---
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SSA
F
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N
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-
F
--------
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D
E
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----
T
D
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L
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---------
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A
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F
M
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PKG
R
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-
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-
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I
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F
R
L------------------------------------------------------
15
Fugue
50.39
22%
-84
* C1 *
2H2M
-
COMD1_HUMAN
A:
[1-108]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
A
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E
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G
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N
A
---------------
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-
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PGI
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E
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R
-
S
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-------
P
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V
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-----
K
M
R
------------------------------------------------------------
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---
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-
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---
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-
S
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---------------------------------------------------------
19
Fugue
47.21
22%
-59
- C2 -
2G7J
-
?
A:
[1-112]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MY
L
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A
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V
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E
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A
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F
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-
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---
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-----
Y
V
N
R
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-----
H
----------
P
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L
A
--
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---
P
A
------------
S
D
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-
T
--------
C
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YLG
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---
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E
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Y
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N
----
G
L
F
G
D
----------------------------------------------------------------------------------------
20
Fugue
47.06
17%
-65
- C1 -
1HUL
-
IL5_HUMAN
A:
[5-112]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
---
P
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L
V
-
K
E
T
L
-----
A
L
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---
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P
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E
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---
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K
K
C
------------------
G
E
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V
M
N
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W
I
--------------------------------------------------------
13
Fugue
45.49
10%
-71
* C3 *
1RKU
7
THRH_PSEAE
A:
[1-206]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D
M
E
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GV
L
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KATTRDIPD
Y
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---
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E
-
I
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DSDRVV
G
Y
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D
P
K
---
R
Q
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I
A
F
K
S
L
Y
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R
---
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----
T
M
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-
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L
K
A
SSRSLSL------------------------------------------
18
Fugue
43.63
14%
-76
- C3 -
3K9D
1
?
A:
[3-456]
LED
K
D
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TGFGI
W
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I
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DMKTIGMLKEDNEKK
V
M
E
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A
V
P
L
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A
G
L
I
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STNP
T
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HPNA
L
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A
GCPKGA
I
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C
M
TVPT
I
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D
Q
L
M
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HKDTAVILATGG
S
A
M
V
K
A
A
Y
S
SG
T
P
A
I
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PGN
G
P
A
F
IERSAN
I
P
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F
D
-----
N
G
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---
N
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-
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---
N
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--
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A
R
V
---
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A
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-
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----------
V
G
A
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Y
---
S
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A
P
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F
Y
T
A
ET
W
Q
E
A
C
E
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M
D
I
----
L
Y
H
E
G
A
-
G
H
T
L
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K
E
I
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R
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F
A
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-
K
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P
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V
N
TP
G
A
L
G
G
I
GATTNLVPALTLGCGAVGGSSSSDNIG
P
E
N
L
F
N
I
R
R
I
A
T
G
VLELEDIR
8
HHSearch
43.18
15%
-19
* C4 *
1XAW
-
OCLN_HUMAN
A:
[445-495]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
Q
S
V
L
D
E
I
N
K
E
L
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R
---------------
L
D
K
E
L
D
D
-
Y
R
---
E
--------------------
E
S
E
E
Y
M
A
A
A
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-----
E
Y
N
R
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K
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V
K
G
S
A
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Y
K
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
42.87
19%
-39
- C2 -
3U4V
-
?
A:
[199-314]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
N
I
G
S
L
S
D
Q
---------------
L
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L
L
-
I
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Q
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G
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R
F
------------
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F
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E
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Y
K
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---
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N
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--
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K
Y
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----------
I
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A
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---
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N
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E
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N
M
S
--------
F
W
----
Q
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V
---
D
Q
S
Y
Q
T
L
K
V
G
Q
Y
Y
---
Y
F
I
G
G
-
E
V
K
Q
F
----
K
---------------
N
N
L
E
L
K
F
K
F
G
-
D
Y
Q
I
I
P
K
E
T
L
--------------------------------------------------------
3
HHSearch
37.68
19%
-87
- C4 -
3RNV
-
A:
[353-402]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
-----
N
V
K
E
S
Q
A
K
E
F
T
K
V
V
R
DK
L
V
G
E
L
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K
W
P
---
T
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L
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V
A
T
A
C
Y
F
L
K
--
V
F
Y
-
P
D
V
A
N
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
33.53
9%
-72
- C4 -
1JI0
1
?
A:
[137-183]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
T
L
S
G
G
E
Q
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---
M
L
A
I
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A
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M
S
R
----
P
---
K
L
L
M
M
D
E
P
S
L
G
L
A
P
I
L
V
S
E
V
F
E
-
V
I
Q
---------------------------------------------------------------
10
HHSearch
33.06
5%
-85
- C4 -
2EQO
-
MIPT3_HUMAN
A:
[82-120]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
---
A
I
D
V
V
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M
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S
G
E
----
P
L
--
L
A
-
K
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A
G
H
E
P
E
R
T
N
E
L
L
Q
-
I
I
G
K
--------------------------------------------------------------
6
HHSearch
32.65
13%
-76
- C4 -
1B0U
3
HISP_SALTY
A:
[151-198]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
H
L
S
G
G
Q
Q
Q
---
R
V
S
I
A
R
A
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A
M
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----
P
---
D
V
L
L
F
D
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P
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S
A
L
D
P
E
L
V
G
E
V
L
R
-
I
M
Q
Q
--------------------------------------------------------------
5
HHSearch
32.22
17%
-46
- C4 -
3TIF
6
Y796_METJA
A:
[143-190]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
Q
L
S
G
G
Q
Q
Q
---
R
V
A
I
A
R
A
L
A
N
N
----
P
---
P
I
I
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A
D
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W
A
L
D
S
K
T
G
E
K
I
M
Q
-
L
L
K
K
--------------------------------------------------------------
4
HHSearch
13.28
31%
149
- C4 -
1YDI
-
VINC_HUMAN
B:
[7-22]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
T
I
A
R
T
I
N
E
---------------
V
E
N
Q
I
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
9.75
14%
41
- C4 -
1OFC
-
X:
[106-126]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
Q
G
F
T
A
W
T
K
R
D
F
N
Q
F
I
K
-
A
N
E
---------------------------------------------------------------
9
HHSearch
8.88
20%
178
- C4 -
3EFD
-
?
K:
[141-155]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
A
L
H
E
R
F
D
R
---------------
L
E
R
M
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------