@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0947: (2016-03-20 )
MEYEYPIDLDWSNEEMISVINFFNHVEKYYESGVTAGDFMGAYKRFKEIVPAKAEEKQIFNTFEKSSGYNSYKAVQDVKTHSEEQRVTAKK
Atome Classification :
(20 SA)
-------------------------------------------------------------.........10........20---....-....30.-.----......40.....------....50----.........60.....-....70.......-.80-........90-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------MEYEYPIDLDWS
N
E
E
M
I
S
V
I
N
---
F
F
N
H
-
V
E
K
Y
Y
ES-G----V
T
A
G
D
F
M
-
G
A
Y
K
R
------
F
K
E
IV-----PAKA
E
E
K
Q
I
F
-
N
T
F
EK-SSGYNS
Y
K
A
V
Q
D
V
-
K
TH-
S
E
E
QRVTAKK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
98.40
40%
-96
- C3 -
2OY9
-
Y2638_BACHD
A:
[6-90]
----------------------------------------------------------------
T
L
P
I
S
L
D
W
S
T
E
E
V
I
D
V
V
H
---
F
F
Q
A
-
I
E
Q
A
Y
D
Q
-
G
----
I
A
R
E
D
L
L
-
G
K
Y
R
R
------
F
K
E
I
V
-----
P
S
K
S
E
E
K
Q
L
F
-
R
A
Y
E
Q
-
E
N
D
V
S
C
Y
Q
T
I
K
K
A
-
R
E
E
-
M
E
E
-
H
I
Q
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
94.54
40%
-82
- C3 -
2OY9
-
Y2638_BACHD
A:
[6-89]
----------------------------------------------------------------
T
L
P
I
S
L
D
W
S
T
E
E
V
I
D
V
V
H
---
F
F
Q
A
-
I
E
Q
A
Y
D
Q
-
G
----
I
A
R
E
D
L
L
-
G
K
Y
R
R
------
F
K
E
I
V
-----
P
S
K
S
E
E
K
Q
L
F
-
R
A
Y
E
Q
-
E
N
D
V
S
C
Y
Q
T
I
K
K
A
-
R
E
E
M
E
E
H
I
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
94.35
44%
-104
- C3 -
2OY9
-
Y2638_BACHD
A:
[8-81]
------------------------------------------------------------------
P
I
S
L
D
W
S
T
E
E
V
I
D
V
V
H
---
F
F
Q
A
-
I
E
Q
A
Y
D
Q
-
G
----
I
A
R
E
D
L
L
-
G
K
Y
R
R
------
F
K
E
I
V
-----
P
S
K
S
E
E
K
Q
L
F
-
R
A
Y
E
Q
-
E
N
D
V
S
C
Y
Q
T
I
K
K
A
-
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_CBE
90.07
44%
-87
- C3 -
2OY9
1
Y2638_BACHD
B:
[9-81]
-------------------------------------------------------------------
I
S
L
D
W
S
T
E
E
V
I
D
V
V
H
---
F
F
Q
A
-
I
E
Q
A
Y
D
Q
-
G
----
I
A
R
E
D
L
L
-
G
K
Y
R
R
------
F
K
E
I
V
-----
P
S
K
S
E
E
K
Q
L
F
-
R
A
Y
E
Q
-
E
N
D
V
S
C
Y
Q
T
I
K
K
A
-
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
57.86
16%
-42
- C4 -
3UGM
-
PTHX1_XANOP
A:
[169-1048]
KPKVRELVAHIVALSQHPAALGTVAVTYQHIITALAT
H
E
D
I
V
G
V
G
KQWSG
A
R
A
L
E
A
L
L
T
D
A
G
E
L
R
G
P
-
P
L
Q
L
D
T
G
Q
L
V
K
I
A
K
---
R
----------
G
-
G
----
V
T
A
--
M
E
-
A
V
H
A
S
------
R
N
A
L
T
-----
P
L
N
L
T
P
A
Q
V
V
-
A
I
A
S
N
-
N
G
G
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
-
C
Q
A
H
G
L
T
P
A
Q
V
V
A
I
A
SHDG
G
K
Q
A
L
E
T
M
Q
R
L
L
P
V
L
C
Q
A
HGLP
P
D
Q
V
V
A
I
A
SNIG
G
K
Q
A
L
E
T
V
Q
R
L
L
PVLCQAHGLT
P
D
Q
V
V
A
I
A
SHGG
G
K
Q
A
L
E
T
V
Q
R
LLPVLCQAHGLT
P
D
Q
V
V
A
I
A
SHDG
G
K
Q
A
L
E
T
V
Q
R
LLPVLCQAHGLT
P
D
Q
V
V
A
I
A
SNGG
G
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
AHGLT
P
D
Q
V
V
A
I
A
S
NGG
K
Q
A
L
E
T
V
Q
R
LLPVLCQAHGLT
P
D
Q
V
V
A
I
A
SHDG
G
K
Q
A
L
E
T
V
Q
R
LL
P
V
L
C
Q
THGLT
P
A
Q
V
V
A
I
A
SHDG
G
K
Q
A
L
E
T
V
Q
Q
L
L
P
V
L
C
Q
AHGLT
P
D
Q
V
V
A
I
A
SNIG
G
K
Q
A
L
A
T
V
Q
R
LLPVLCQAHGLTPDQV
V
A
I
A
S
N
GGG
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
AHGLT
P
D
Q
V
V
A
I
A
SNGG
G
K
Q
A
L
E
T
V
Q
R
LLPVLCQAHGLTQVQVVAIASNIGGKQA
L
E
T
V
Q
R
L
LPVLCQA
H
G
L
T
P
A
Q
V
V
A
I
A
SHDG
G
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
AHGLT
P
D
Q
V
V
A
IASNGG
G
K
Q
A
L
E
T
V
Q
R
LLPGLT
Q
E
Q
V
V
A
I
A
SNNGG
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
AHGLT
P
D
Q
V
V
A
I
A
SNGG
G
K
Q
A
L
E
T
V
Q
R
LLPVLCQAHGLT
P
A
Q
V
V
A
I
A
SNIG
G
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
DHGLT
L
A
Q
V
V
A
I
A
SNIG
G
K
Q
A
L
E
T
V
Q
R
L
LPVLCQGLT
Q
D
Q
V
V
A
I
A
SNIG
G
K
Q
A
L
E
T
V
Q
R
LLPVLCQDHGLT
P
D
Q
V
V
A
I
A
S
NIGGKQ
A
L
E
T
V
Q
R
L
L
PVLCQDHGLT
L
D
Q
V
V
A
I
A
S
N
GGK
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
DHGLTPDQVVAIASNSG
31
Fugue
51.89
15%
-53
* C4 *
4NL9
-
ANKS3_HUMAN
A:
[3-66]
-------------------------------------------------------------
A
P
Y
S
G
P
Q
D
L
----
A
A
L
L
E
Q
I
G
---
C
L
K
Y
-
L
Q
V
F
E
E
Q
-
D
----
V
D
--------
L
R
E
------
F
L
T
L
T
-----
E
S
D
L
K
E
I
------------
G
I
T
L
F
G
P
K
R
K
M
-
T
S
A
-
I
A
R
W
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
45.42
14%
-23
- C3 -
3GXV
1
DNAB_HELPY
A:
[1-122]
-------------------------------------------------MD
H
L
K
H
L
Q
Q
L
Q
N
I
E
R
I
V
L
S
G
I
V
L
A
N
H
K
I
E
E
V
H
S
---
V
L
E
P
-
S
D
F
Y
Y
P
P
-
N
----
G
L
F
F
E
I
A
-
L
K
L
H
E
E
DCPID
E
N
F
I
R
Q
K
MPK
D
K
Q
I
K
E
E
D
L
V
-
A
I
F
A
A
-
S
P
I
D
N
I
E
A
Y
V
E
E
I
-
K
N
A
-
S
I
K
R
K
L
F
G
L
A
N
T
I
R
E
Q
A
H---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
45.25
10%
-80
- C4 -
1WWU
-
A:
[17-78]
----------------------------------------------------------------
S
Q
P
L
T
Y
E
S
G
P
D
E
V
R
A
W
L
E
A
K
A
F
S
P
R
-
I
V
E
N
L
G
--
I
----
L
T
G
P
Q
L
F
S
L
N
K
E
E
------
L
K
K
V
C
-----
G
E
--
E
G
V
R
V
Y
-
S
Q
L
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
45.12
14%
-24
- C3 -
1GXG
-
IMM8_ECOLX
A:
[1-85]
-------------------------------------------------------------
M
E
L
K
N
S
I
S
-
D
Y
T
E
T
E
F
K
K
I
I
E
---
D
I
I
N
-
C
E
G
-----
D
------
E
K
K
Q
D
-
D
N
L
E
H
------
F
I
S
V
T
-----
E
H
P
S
G
S
D
L
I
Y
-
Y
P
E
G
N
-
N
D
G
-
S
P
E
A
V
I
K
E
I
-
K
E
W
-
R
A
A
N
G
K
S
G
F
K
QG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
41.93
22%
-63
- C3 -
2RP5
-
CEP1_CAEEL
A:
[599-631]
----------------------------------------------------------------------------
M
G
D
M
I
R
---
E
F
E
K
-
H
N
D
I
F
E
R
I
G
----
I
D
S
S
K
L
S
-
K
Y
Y
E
A
------
F
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
40.92
16%
-44
- C3 -
1X3A
-
A:
[62-80]
-------------------------------------------------------------------------------------------------------------------
M
------
R
F
A
L
V
-----
P
K
L
V
K
E
E
V
F
W
-
R
N
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
38.73
26%
-84
- C3 -
3FWK
1
?
A:
[195-226]
-----------------------------------------------------------------
Q
P
L
-
L
H
W
N
L
A
N
I
W
S
F
L
L
---
Y
S
N
E
P
I
C
E
L
Y
R
Y
-
G
----
F
T
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
38.06
27%
-39
- C2 -
2UUX
2
?
A:
[1-55]
--------------------------------------------------------------
A
A
E
C
T
V
P
I
G
W
S
E
P
V
K
G
---
L
---
C
K
A
R
-
F
T
R
Y
Y
C
M
-
G
N
C
C
K
V
Y
E
G
C
Y
T
-
G
G
Y
S
R
------
M
G
E
C
A
R
N
C--
P
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
37.16
19%
-59
- C3 -
1SUR
-
CYSH_ECOLI
A:
[178-210]
----------------------------------------------------------------
V
L
P
I
I
-
D
W
D
N
R
T
I
Y
Q
Y
L
Q
---
K
H
G
L
K
Y
H
P
L
W
D
E
-
G
----
Y
L
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
33.79
33%
-27
* C5 *
4JKL
-
?
A:
[77-126]
-------------------------------------------------------------------------
D
E
E
M
V
L
R
F
G
---
S
V
T
H
-
Q
A
K
I
Y
V
D
-
G
----
V
L
V
G
E
H
K
-
G
G
F
T
P
------
F
E
V
L
V
-----
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
33.39
33%
-24
- C5 -
4JKK
-
?
A:
[77-125]
-------------------------------------------------------------------------
D
E
E
M
V
L
R
F
G
---
S
V
T
H
-
Q
A
K
I
Y
V
D
-
G
----
V
L
V
G
E
H
K
-
G
G
F
T
P
------
F
E
V
L
V
-----
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
32.79
11%
37
- C3 -
1EF1
-
?
C:
[1-89]
-------------------------------------------------------------
A
E
A
S
A
D
L
R
A
D
A
M
A
K
D
R
S
E
E
E
R
---------
T
T
E
A
E
K
-
N
----
E
R
V
Q
K
H
L
-
K
A
L
T
S
------
E
L
A
N
A
-----
R
D
E
S
K
K
T
A
N
D
M
I
H
A
E
N
M
R
L
G
R
D
K
Y
K
T
L
R
Q
I
-
R
Q
G
-
N
T
K
Q
R
I
D
E
F
E
S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
30.68
15%
-47
* C3 *
1XC0
-
PAP4_PARMA
A:
[1-33]
---------------------------------------------------------------------------------
G
---
F
F
A
L
-
I
P
K
I
I
S
S
-
P
----
L
----
F
K
-
T
L
L
S
A
------
V
G
S
A
L
-----
S
S
S
G
G
Q
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
30.13
20%
33
- C3 -
2C9L
2
BZLF1_EBVB9
Y:
[16-40]
--------------------------------------------------------------------------------------------------------
S
R
A
K
F
K
-
Q
L
L
Q
H
------
Y
R
E
V
A
-----
A
A
K
S
S
E
N
D
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
29.71
4%
-53
- C3 -
1B0N
2
SINI_BACSU
B:
[16-39]
--------------------------------------------------------------------------------------
V
E
L
-
M
V
E
A
K
E
A
-
N
----
I
S
P
E
E
I
R
-----
K
------
Y
L
L
L
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------