@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1000: (2016-03-21 )
MKKNFIGKSILSIAAISLTVSTFAGESHAQTKNVEAAKKYDQYQTNFKKQVNKKVVDAQKAVNLFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNTLK
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------.........10........20........30........40........50..-.-.....60.......---.70.......-.80----........-90.........100.......----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------MKKN
F
I
G
K
S
I
L
S
I
A
A
I
S
L
T
V
S
TFAGESHAQTK
N
V
E
A
A
K
K
Y
D
Q
Y
Q
T
N
F
K
K
Q
V
N
K
-
K
-
V
V
D
A
Q
K
A
V
N
L
F
K
R
T
---
R
T
V
A
T
H
R
K
A
Q
-
R
A
V
----
N
L
I
H
FQH
S
-
Y
-
E
K
K
K
L
Q
R
Q
I
D
L
V
L
K
YNTLK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
89.67
99%
-43
- C4 -
2NOJ
-
?
B:
[52-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------
N
K
-
K
-
V
V
D
A
Q
K
A
V
E
L
F
K
R
T
---
R
T
V
A
T
H
R
K
A
Q
-
R
A
V
----
N
L
I
H
F
Q
H
S
-
Y
-
E
K
K
K
L
Q
R
Q
I
D
L
V
L
K
Y
N
T
L
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
89.46
98%
-43
- C4 -
2NOJ
-
?
B:
[52-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------
N
K
-
K
-
V
V
D
A
Q
K
A
V
E
L
F
K
R
T
---
R
T
V
A
T
H
R
K
A
Q
-
R
A
V
----
N
L
I
H
F
Q
H
S
-
Y
-
E
K
K
K
L
Q
R
Q
I
D
L
V
L
K
Y
N
T
L
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
74.51
50%
-27
- C4 -
2GOX
-
FIB_STAAM
B:
[109-160]
------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
K
-
L
I
Q
A
Q
N
L
V
R
E
F
E
K
T
---
H
T
V
S
A
H
R
K
A
Q
-
K
A
V
----
N
L
V
S
F
E
Y
K
-
V
-
K
K
M
V
L
Q
E
R
I
D
N
V
L
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
72.50
48%
-20
- C4 -
3D5S
-
FIB_STAAE
C:
[19-70]
------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
K
-
L
I
Q
A
Q
N
L
V
R
E
F
E
K
T
---
H
T
V
S
A
H
A
K
A
Q
-
K
A
V
----
N
L
V
S
F
E
Y
K
-
V
-
K
K
M
V
L
Q
E
R
I
D
N
V
L
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
71.11
43%
-36
- C4 -
2GOM
-
FIB_STAAM
A:
[106-165]
---------------------------------------------------------------------------------------------------------------------------------------------------
K
K
E
Q
-
K
-
L
I
Q
A
Q
N
L
V
R
E
F
E
K
T
---
H
T
V
S
A
H
R
K
A
Q
-
K
A
V
----
N
L
V
S
F
E
Y
K
-
V
-
K
K
M
V
L
Q
E
R
I
D
N
V
L
K
Q
G
L
V
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
70.33
45%
-38
- C4 -
2GOM
-
FIB_STAAM
A:
[109-165]
------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
K
-
L
I
Q
A
Q
N
L
V
R
E
F
E
K
T
---
H
T
V
S
A
H
R
K
A
Q
-
K
A
V
----
N
L
V
S
F
E
Y
K
-
V
-
K
K
M
V
L
Q
E
R
I
D
N
V
L
K
Q
G
L
V
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
70.18
42%
-33
- C4 -
2GOM
-
FIB_STAAM
A:
[105-165]
--------------------------------------------------------------------------------------------------------------------------------------------------
I
K
K
E
Q
-
K
-
L
I
Q
A
Q
N
L
V
R
E
F
E
K
T
---
H
T
V
S
A
H
R
K
A
Q
-
K
A
V
----
N
L
V
S
F
E
Y
K
-
V
-
K
K
M
V
L
Q
E
R
I
D
N
V
L
K
Q
G
L
V
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
69.83
43%
-19
- C4 -
3D5R
-
FIB_STAAE
C:
[18-75]
-----------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
-
K
-
L
I
Q
A
Q
N
L
V
R
E
F
E
K
T
---
H
T
V
S
A
H
R
K
A
Q
-
K
A
V
----
A
L
V
S
F
E
Y
K
-
V
-
K
K
M
V
L
Q
E
R
I
D
N
V
L
K
Q
G
L
V
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
67.74
28%
-27
- C4 -
2WY7
-
?
Q:
[22-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------
D
E
-
R
-
V
K
S
A
N
D
A
I
S
K
L
N
E
K
---
D
S
I
E
N
R
R
L
A
Q
-
R
E
V
----
N
K
A
P
M
----
D
-
V
K
E
H
L
Q
K
Q
L
D
A
L
V
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
60.71
21%
2
- C3 -
4INO
-
?
A:
[1-302]
Q
E
V
K
V
K
D
YF
G
E
Q
T
I
K
L
PVS
K
I
I
Y
L
GSFAE
V
P
A
M
F
HTWDRVVGIS
D
Y
A
F
K
S
D
I
V
K
A
TLKDPER
I
K
P
M
S
SDHAAALN
V
E
L
L
K
K
L
SPD
L
V
V
T
F
VGN
P
K
A
V
E
H
A
K
K
F
-
G
I
S
F
L
S
F
Q
E
K
T
I
A
E
V
M
E
D
I
D
T
Q
A
K
A
L
E
V
D
A
S
K
K
L
A
K
M
Q
E
T
L
D
F
I
A
E
R
L
K
-
G
V
K
K
K
K
G
V
E
L
F
H
K
A
---
N
K
I
S
G
H
Q
A
L
D
-
S
D
I
L
E
K
G
G
I
D
N
F
G
L
K
-
Y
V
K
F
G
R
A
D
I
S
V
E
K
I
V
K
E
N
P
E
I
I
F
I
W
WISPLS
P
E
D
V
L
N
NPKFATI
K
A
I
K
N
KQ
V
Y
K
L
P
TMDIGGPR
A
P
L
I
S
L
F
I
A
L
K
A
HPEAFKGVD
I
N
A
I
V
K
D
Y
Y
K
V
V
FDLNDAEVEPFLWH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
57.00
27%
11
- C4 -
1YUW
-
HSP7C_BOVIN
A:
[208-293]
----------------------------------------------------------------------------------------------------------
S
I
L
T
I
A
A
G
I
F
E
V
K
S
T
A
G
D
T
H
L
G
G
E
D
F
D
-
N
R
M
V
N
H
F
I
A
E
F
K
R
K
H
K
K
-
D
-
I
S
E
N
K
R
A
V
---
R
R
L
---
R
T
A
C
--
E
R
A
K
-
R
T
L
----
S
S
-
S
T
Q
A
S
-
I
-
E
I
D
S
L
Y
E
G
I
D
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
53.14
13%
12
* C3 *
3VS8
2
?
A:
[7-410]
-----------------------------------------------------------------------------------------HPN
S
A
V
L
A
D
F
I
P
V
Q
L
A
K
P
V
P
Q
R
I
T
L
E
L
T
A
Y
G
F
A
-
R
A
H
C
L
S
N
G
I
T
D
E
E
G
F
V
Q
V
Y
K
T
V
K
E
K
F
D
K
-
Y
-
A
V
S
P
A
Q
I
-----
K
Q
---
R
Q
L
V
Y
F
P
K
L
T
-
D
I
R
----
F
G
D
G
N
F
D
I
-
A
-
D
P
E
P
D
Q
A
H
L
R
L
F
D
I
K
K
D
P
R
GAD
L
K
T
R
H
E
S
Y
A
K
V
V
G
K
G
L
E
Q
M
F
E
GTLEAPD
D
L
I
H
V
T
CSGYLAPS
P
A
E
R
M
V
A
D
R
GWFE
T
T
V
T
H
SYNMGCY
G
A
F
P
A
I
K
M
A
H
G
M
L
A
S
A
Q
W
GATPPKT
R
V
D
I
A
H
T
E
LMSAHNNIAESR
V
D
N
I
I
S
A
T
L
F
S
D
G
L
I
K
Y
S
V
Y
P
E
D
E
L
R
R
Q
G
L
R
G
L
R
I
L
A
M
S
E
H
L
L
P
DSADT
M
T
G
V
P
G
SHQF
V
M
T
L
S
PL
V
P
A
I
I
K
R
H
V
R
A
F
A
V
D
L
L
R
R
A
GMDFERDKDALSFAIHPGGPK
I
V
D
H
V
Q
E
E
L
GLAEDQV
A
I
S
K
S
V
F
L
E
NGNMSSS
T
I
P
H
I
L
K
A
Y
L
E
E
ATVG
T
R
I
A
C
L
G
F
G
P
GL
T
A
A
G
L
V
L
E
K
I
18
HHSearch
41.88
20%
14
- C4 -
3TUL
-
SIPB_SALTY
A:
[159-209]
---------------------------------------------------------------------------------------------------------------------------------------------------
A
A
T
K
-
K
-
L
T
Q
A
Q
N
K
L
Q
S
L
------------
A
Q
A
E
-
A
A
V
----
E
Q
A
G
K
E
A
T
-
E
-
A
K
E
A
L
D
K
A
T
D
A
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
38.08
27%
-6
- C4 -
4TR5
-
?
A:
[66-120]
-----------------------------------------------------------------------------------------------------------------------------------------------
G
F
K
P
E
I
D
K
-
K
-
I
L
K
L
D
E
A
L
K
K
S
K
L
S
---
E
T
V
Q
V
Y
R
G
D
D
-
T
S
I
----
F
G
K
E
F
Q
N
S
I
Y
-
Q
G
N
K
V
N
R
E
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
37.97
13%
28
- C4 -
1EQ1
-
APL3_MANSE
A:
[100-150]
----------------------------------------------------------------------------------------------------------------------------------------
E
A
N
A
F
K
D
K
L
Q
A
A
V
Q
T
-
T
-
V
Q
E
S
Q
K
L
A
K
E
V
A
S
N
MEE
T
N
K
K
L
A
P
K
I
K
-
Q
A
Y
----
D
D
F
V
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
33.72
11%
40
- C3 -
2I9S
-
MESD_MOUSE
A:
[1-97]
--------------------------------------------------------------------------------------------------
G
P
G
K
P
E
S
I
L
K
M
T
K
K
G
K
T
L
M
M
F
V
T
V
S
G
N
P
T
E
K
E
T
E
E
I
T
S
L
W
Q
G
S
L
F
N
A
N
Y
D
V
Q
R
-
F
-
I
V
G
S
D
R
A
I
F
M
L
R
D
---------
G
S
Y
A
W
-
E
I
K
----
D
F
L
V
S
Q
D
R
-
C
-
A
E
V
T
L
E
G
Q
-----
M
Y
P
G
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
31.94
33%
68
- C4 -
4MI0
2
A:
[119-163]
---------------------------------------------------------------------------------------------------------------------
I
S
E
Y
C
G
E
I
I
S
Q
D
E
A
D
R
R
G
K
V
--
K
Y
M
C
S
F
L
F
N
L
N
N
-
D
F
V
V
D
A
T
R
K
G
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
30.84
33%
58
- C4 -
3J6V
-
RT05_BOVIN
E:
[260-304]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
T
---
E
R
A
D
A
F
R
K
A
K
N
R
A
V
----
H
Y
L
H
Y
I
E
R
-
Y
-
E
D
H
T
I
Y
H
D
I
S
L
T
F
K
R
T
H
I
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
28.16
33%
72
- C4 -
4MI5
1
A:
[121-165]
---------------------------------------------------------------------------------------------------------------------
I
S
E
Y
C
G
E
I
I
S
Q
D
E
A
D
R
R
G
K
V
Y
D
K
Y
M
C
S
F
L
F
N
L
N
N
-
D
F
V
V
D
A
T
R
K
G
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
26.78
22%
60
- C4 -
2HFR
-
A:
[1-27]
----------------------------------------------------------------------------------------------------------------------------------------------
K
R
F
W
P
L
V
P
V
-
A
-
I
N
T
V
A
A
G
I
N
L
Y
K
A
I
---
R
R
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------