@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1191_1: (2016-03-23 )
MVSLMLVILHKWTVFIQHLMNILSGGESIIE
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------.........10------.-----....-....20........30----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------M
V
S
L
M
L
V
I
L
H
-------
K
-----
W
T
V
F
-
I
Q
H
L
M
N
I
LSG
G
E
S
IIE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
87.11
25%
-219
- C5 -
1FC2
1
C:
[5-47]
--------------------------------------------------------------------------------------------------------------FNKE
Q
Q
N
A
F
Y
E
I
L
H
LPNLNEE
Q
-----
R
N
G
F
-
I
Q
S
L
K
D
D
P
S
Q
S
A
N
L
L
A
E---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
72.45
16%
-183
- C5 -
3A6P
3
XPO5_HUMAN
A:
[2-1136]
AMDQ
V
N
A
L
C
E
Q
L
V
K
A
V
T
V
M
M
DPNST
Q
R
Y
R
L
E
A
L
K
F
C
E
E
F
K
E
KCPI
C
V
P
C
G
L
R
L
A
EKTQV
A
I
V
R
H
F
G
L
Q
I
L
E
H
V
V
K
FRWNGMS
R
L
E
K
V
Y
L
K
N
S
V
M
E
L
I
A
NGTLNILEEE
N
H
I
K
D
A
L
S
R
I
V
V
E
M
I
K
-------
R
EWPQH
W
P
D
M
-
L
I
E
L
D
T
L
S
K
Q
G
E
T
Q
T
E
L
V
M
F
I
L
L
R
L
A
E
D
V
VTFQTLP
P
Q
R
R
R
D
I
Q
Q
T
L
T
Q
N
M
E
R
I
F
S
F
L
L
N
T
L
Q
E
N
V
N
K
Y
Q
QVKTDTSQ
E
S
K
A
Q
A
N
C
R
V
G
V
A
A
L
N
T
L
A
G
Y
IDWVSMSHITAENC
K
L
L
E
I
L
C
L
L
L
NEQEL
Q
L
G
A
A
E
C
L
L
I
A
V
S
RKGKLEDRKPLMVLFG
D
V
A
M
H
Y
I
L
S
A
A
Q
T
ADGGGLV
E
K
H
Y
V
F
L
K
R
L
C
Q
V
L
C
A
L
G
N
Q
L
C
A
L
L
G
A
DSDVETPSN
F
G
K
Y
L
E
S
F
L
A
F
T
T
HPS
Q
F
L
R
S
S
T
Q
M
T
W
G
A
L
F
R
HEILSRD
P
L
L
L
A
I
I
P
K
Y
L
R
A
S
M
T
N
L
VKMGFPSKTDS
P
S
C
E
Y
S
R
F
D
FDS
D
E
D
F
N
A
F
F
N
S
S
R
A
Q
Q
G
E
V
M
R
L
A
C
R
L
D
P
K
T
S
F
Q
M
A
G
E
W
L
K
Y
Q
L
S
TFSLCSVFS
P
S
F
V
Q
W
E
A
M
T
L
F
L
E
S
V
I
T
Q
M
F
R
TLNREEIP
V
N
D
G
I
E
L
L
Q
M
V
L
N
FDTKD
P
L
I
L
S
C
V
L
T
N
V
S
A
L
FPFVTYRPEF
L
P
Q
V
F
S
K
L
F
S
S
V
T
FETVEESKAPRT
R
A
V
R
N
V
R
R
H
A
C
S
S
I
I
K
M
C
R
D
YPQLVLPN
F
D
M
L
Y
N
H
V
K
Q
L
L
SNELLLT
Q
M
E
K
C
A
L
M
E
A
L
V
L
I
S
N
Q
FKN
Y
E
R
Q
K
V
F
L
E
E
L
M
A
P
V
A
S
I
W
L
S
Q
D
M
H
R
V
L
S
D
V
D
A
F
I
A
Y
V
GTDQKDPGLE
D
P
C
G
L
N
R
A
R
M
S
F
C
V
Y
S
I
L
G
V
V
K
R
TCWPTD
L
E
E
A
K
A
G
GFVVGYTSSG
N
P
I
F
R
N
PC
T
E
Q
I
L
K
L
L
D
N
L
L
A
L
I
R
T
H
N
T
L
Y
A
P
E
M
L
A
K
MAEPFTKALDMLDAEKSAILGL
P
Q
P
L
L
E
LNDSPVFKT
V
L
E
R
M
Q
R
F
F
S
T
L
Y
E
N
C
F
H
I
L
G
K
AGPSMQ
Q
D
F
Y
T
VED
L
A
T
Q
L
L
S
SAFVNLNNIP
D
Y
R
L
R
P
M
L
R
VF
V
K
P
L
V
L
F
CPPEHYEAL
V
S
P
I
L
G
P
L
F
T
Y
L
H
M
R
L
S
Q
K
W
Q
V
I
N
Q
RE
S
Q
E
M
L
E
E
Q
L
V
R
M
L
T
R
E
V
M
D
L
I
T
V
C
CVSELT
D
L
G
K
C
L
M
K
HE
D
V
C
T
A
L
L
I
T
A
F
N
S
L
A
WKDTLS
C
Q
R
T
T
SQLCW
P
L
L
K
Q
V
LSGTLL
A
D
A
V
T
W
L
F
T
S
V
L
K
G
L
Q
M
HGQH
D
G
C
M
A
S
L
V
H
L
A
F
Q
I
Y
E
A
L
RPRYLE
I
R
A
V
M
E
Q
IPEIQ
K
D
S
L
D
Q
F
D
C
K
L
L
N
P
19
Fugue
66.22
25%
-101
- C5 -
1G39
-
HNF1A_MOUSE
C:
[1-29]
------------------------------------------------------------------------------------------------------------------
M
V
S
---
K
L
S
Q
-------
L
-----
Q
T
E
L
-
L
A
A
L
L
E
S
G
L
S
K
E
A
L
I
Q
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
66.17
24%
-145
- C5 -
4OBX
2
COQ5_YEAST
A:
[23-257]
----------------------------------------------------------------------------------------------------------S
V
A
N
R
Y
D
L
M
N
D
V
M
S
--
L
G
-------
I
-----
H
R
L
W
-
K
D
H
F
I
N
K
L
D
A
G
K
R
P
N
S
T
T
P
L
N
F
I
D
V
AGGSG
D
I
A
F
G
L
L
D
H
A
E
S
K
FGDTE
S
T
M
D
I
V
D
IN
P
D
M
L
K
E
G
E
K
R
A
M
E
Q
GKYFKDPR
V
R
F
L
V
S
NGEKLEEIDSDSKD
I
Y
T
V
S
FGIRNFTD
I
Q
K
G
L
N
T
A
Y
R
V
LKPG
G
I
F
Y
C
L
E
F
S
K
I
EN
P
L
M
D
F
A
Y
Q
Q
W
A
K
V
L
P
V
M
G
S
M
IAND
Y
D
S
Y
Q
Y
L
V
E
S
I
E
R
FPD
Q
E
T
F
K
S
M
I
E
K
A
GFKS
A
G
Y
E
S
L
TFGI
C
A
I
H
W
G
I
K
V----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
63.98
25%
-96
- C5 -
1G39
-
HNF1A_MOUSE
A:
[1-28]
------------------------------------------------------------------------------------------------------------------
M
V
S
---
K
L
S
Q
-------
L
-----
Q
T
E
L
-
L
A
A
L
L
E
S
G
L
S
K
E
A
L
I
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
62.75
25%
-120
* C5 *
1OWF
-
IHFB_ECOLI
B:
[24-43]
---------------------------------------------------------------------------------------------------------------------------
D
-------
A
-----
V
K
E
M
-
L
E
H
M
A
S
T
L
A
Q
G
E
R
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
58.94
32%
-92
- C5 -
3TJY
1
A:
[42-60]
---------------------------------------------------------------------------------------------------------------------------
A
-------
E
-----
Q
N
V
F
-
L
Q
H
F
P
D
M
L
P
C
G
I
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
55.47
41%
-116
- C5 -
2JXF
-
?
A:
[6-23]
-----------------------------------------------------------------------------------------------------------------------------------
K
-----
L
E
V
F
W
A
K
H
M
W
N
F
I
S
G
I
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
52.29
33%
-64
- C5 -
3HGL
-
A:
[42-59]
-----------------------------------------------------------------------------------------------------------------------------------
E
-----
Q
N
I
F
-
R
Q
H
F
P
N
M
P
M
H
G
I
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
52.14
25%
-23
- C5 -
1G2Y
-
HNF1A_MOUSE
B:
[1-30]
------------------------------------------------------------------------------------------------------------------
M
V
S
----
K
L
S
-------
Q
-----
L
Q
T
E
M
L
A
A
L
L
E
S
G
L
S
K
E
A
L
I
Q
AL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
51.99
37%
-64
- C5 -
1L2Y
-
?
A:
[1-20]
------------------------------------------------------------------------------------------------------------------------------------------
N
L
Y
-
I
Q
W
L
K
D
---
G
G
P
S
S
G
R
P
P
P
S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
50.40
25%
-44
- C5 -
1G2Y
-
HNF1A_MOUSE
D:
[1-30]
------------------------------------------------------------------------------------------------------------------
M
V
S
----
K
L
S
-------
Q
-----
L
Q
T
E
M
L
A
A
L
L
E
S
G
L
S
K
E
A
L
I
Q
AL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
44.48
24%
-109
- C5 -
3JV9
-
?
A:
[201-217]
-------------------------------------------------------------------------------------------------------------------------------------------
A
M
-
K
A
A
I
M
Q
S
Q
L
H
G
V
S
F
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
43.92
24%
-85
- C5 -
1X9F
1
GLB2_LUMTE
B:
[128-144]
---------------------------------------------------------------------------------------------------------------------------
E
-------
A
-----
W
D
A
C
-
I
D
H
I
E
D
G
I
K
G
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
41.12
75%
131
- C3 -
1N3H
-
A:
[1-8]
--------------------------------------------------------------------------------------------------------------------------------------------------
M
N
K
L
S
G
G
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
39.86
19%
-83
- C5 -
3WFW
2
?
A:
[117-132]
-----------------------------------------------------------------------------------------------------------------------------------
L
-----
W
T
Q
A
-
Y
E
A
L
A
Q
V
M
I
E
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
38.08
12%
-111
- C5 -
1X9F
1
GLB4_LUMTE
A:
[133-149]
---------------------------------------------------------------------------------------------------------------------------
D
-------
A
-----
W
N
R
C
-
F
H
R
L
V
A
R
I
A
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
37.25
25%
-55
- C5 -
3PT8
-
GLB2_PHAPT
A:
[134-147]
-----------------------------------------------------------------------------------------------------------------------------------
A
-----
W
E
V
F
-
V
G
F
I
C
K
T
L
G
D
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
35.14
18%
-96
- C5 -
1GCV
1
HBB_MUSGR
B:
[118-134]
---------------------------------------------------------------------------------------------------------------------------
G
-------
I
-----
W
D
K
F
-
F
E
V
V
I
D
A
I
S
K
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
33.21
12%
-81
- C5 -
1H97
1
GLB_PAREP
A:
[130-146]
---------------------------------------------------------------------------------------------------------------------------
A
-------
A
-----
V
E
K
F
-
L
K
H
V
F
P
M
M
A
A
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------