@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1332: (2016-03-24 )
MNCQSESVVRLCVRYAEQLSVFEEFTVLDILGDISVDQISDGTLYYTCEKFKLLVLQGNVLGVQIITNNDESTCEVKYRKMF
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......----...10..--------...-...-20---......---..30--......---..----40........50......-..60......--..70........80.-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNC
Q
S
E
----
S
V
V
R
L
C
V
--------
R
Y
A
-
E
Q
L
-
S
V
---
F
E
E
F
T
V
---
L
D
I
L--GDI
S
V
D---QI----SDG
T
L
Y
Y
T
C
E
K
F
K
L
L
V
L
Q-G
N
V
L
G
V
Q
I
I
T--NNDES
T
C
E
V
K
Y
R
KMF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
74.68
22%
-78
* C4 *
3WKX
2
HYBA1_BIFL2
A:
[1-659]
M
N
V
T
I
TS
P
F
W
K
R
R
R
D
Q
I
V
E
S
V
I
P
Y
Q
W
G
V
M
N
DE
I
D
T
T
V
P
DDPAGNQ
L
A
D
S
K
SH
A
V
A
N
L
K
V
A
A
GE
L
D
D
E
F
HGMVF
Q
D
S
D
V
Y
K
W
L
E
E
A
A
Y
A
L
A
Y
HPD
P
E
L
K
A
L
C
D
R
T
V
D
L
I
A
R
A
QQSDGYLD
T
P
Y
Q
I
KSGVWADRPRFSLIQQSH
E
M
Y
V
M
G
H
Y
I
E
A
A
V
A
Y
H
Q
V
TGN
E
Q
A
L
E
V
A
K
K
M
A
D
C
L
D
A
N
F
GPEEGKIHGADGHPE
I
E
L
A
L
A
K
L
Y
E
E
TGE
K
R
Y
L
T
L
S
Q
Y
L
I
D
V
RGQDPQ
F
Y
A
K
Q
L
K
A
M
N
GDNIFHGFYKPTYFQAAEPVRDQQTADGH
A
V
R
V
G
Y
L
C
T
G
V
A
H
V
G
R
L
L
GD
Q
G
L
I
D
T
A
K
R
F
W
K
N
I
VTRRMYVTGAIGSTHVGESFTYDYDLPNDTMYGE
T
C
A
S
V
A
M
S
M
F
A
Q
Q
M
L
D
L
EPK
G
E
Y
A
D
V
L
E
K
E
L
F
NG
S
I
A
G
I
SLDGK
Q
Y
Y
YVNALETTPDGLDNPDRHHVLSHRVDWFGCACC
P
A
N
I
A
R
L
I
A
S
VDRYI
Y
T
E
R
DGGK
T
V
L
S
H
Q
FI
A
N
T
A
E
F
ASG
L
T
V
E
Q
R
S
NFPWDG
H
V
E
Y
T
V
S
L
P
A
S
A
T
D
----
S
S
V
R
F
G
L
--------
R
I
P
-
G
W
S
-
R
G
---
S
Y
T
L
T
V
---
N
-----
G
K
P
A
V
G
---
S
L
----
E
D
G
F
V
Y
L
V
V
N
A
--------
G
D
T
L
E
I
A
L
E
L
--
D
M
S
-----
V
K
F
V
R
A
N
SRVRSDAG
Q
V
A
V
M
R
GP
L
V
Y
C
A
E
QVDNPGDLWN
Y
R
L
A
D
GVTGAD
A
A
V
A
F
Q
ADLLG
G
V
D
T
V
D
L
P
A
V
R
E
H
ADEDDAPLYVDADE
P
R
A
G
E
P
A
T
L
R
L
V
PYYSWANR
E
I
G
E
M
R
V
F
Q
R
R
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
65.25
22%
-96
- C4 -
1PBA
-
?
?:
[1-81]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HHSG
E
H
F
E
G
E
----
K
V
F
R
V
N
V
--------
E
D
E
-
N
D
I
-
S
E
---
L
H
E
L
A
S
TRQ
I
D
F
W
--
K
P
D
S
V
T
---
Q
I
----
K
P
H
------
S
T
V
D
F
R
V
K
A
-
E
D
I
L
A
V
E
D
F
L
--
E
Q
N
E
L
Q
Y
E
V
L
I
N
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
64.71
16%
-73
- C5 -
4RHJ
1
?
A:
[19-318]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SHMF
S
K
F
L
M
N
V
K
G
VTPRGSDWANRLGP
V
A
L
F
G
Y
G
A
GMPRRAP
L
L
D
F
F
L
Q
SPRDCDHY
A
E
L
T
I
H
DKGP
I
E
C
P
P
E
T
V
M
F
M
P
V
L
N
CGQMLDEAAGTETPT
S
D
E
W
Y
L
G
S
L
E
A
S
T
E
L
L
E
K
GYV
P
V
S
V
G
G
D
G
S
----
A
T
L
S
M
V
E
--------
A
Y
K
-
R
L
F
-
P
S
----
D
D
I
V
I
---
V
H
F
S
--
A
R
P
S
V
S
---
D
P
----
R
--------
S
P
L
R
V
L
L
D
K
-
G
L
L
K
G
V
V
S
V
G
--
N
R
Q
V
S
S
E
D
R
K
V
R
K
L
H
K
M
F
Y
M
D
MRDIRND
Y
P
V
F
I
S
I
D
ASVLDPAFAPAVDSPVAGGLS
T
R
D
L
L
H
I
M
N
G
IRGPKVV
G
I
D
V
Y
GYNPDL
D
V
Y
R
KDNVG
L
T
A
I
A
L
S
K
I
I
K
E
G
I
LK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
57.85
20%
-137
- C3 -
1D8J
-
A:
[12-49]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
A
K
I
V
--------
N
Y
M
-
K
T
R
-
H
Q
R
GD
T
H
P
L
T
L
---
D
E
I
L
--
D
E
T
Q
H
L
---
D
I
----
G
L
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
54.56
26%
-101
- C3 -
2DMF
-
RNF25_HUMAN
A:
[75-127]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
Q
I
S
I
--------
R
N
P
-
R
G
L
-
S
D
---
E
Q
I
H
T
I
---
L
Q
V
L
--
G
H
V
A
K
A
---
G
L
----
G
T
A
M
L
Y
E
L
I
E
K
G
K
E
I
L
T
D
-
N
N
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
52.74
26%
-39
- C3 -
4WID
1
?
A:
[10-362]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KDMAL
Q
H
A
V
D
L
L
E
K
M
L
A
D
E
E
KLTEFNLGDPLFESAND
D
P
I
K
T
L
E
E
I
I
Q
E
GDD
V
V
G
A
H
Q
L
V
V
T
Q
I
K
L
R
V
Q
R
N
R
R
L
A
D
E
I
I
R
E
Q
L
T
D
I
R
K
V
F
S
D
K
F
E
K
L
E
Q
G
I
Q
N
S
Y
L
L
L
D
K
L
K
T
PFQDMR
C
L
F
E
V
A
N
E
Q
F
N
D
TPVPP
Q
Y
K
E
F
M
----
V
C
L
K
Q
I
V
--------
Q
Y
A
-
V
N
S
-
S
S
---
L
E
K
F
V
M
---
L
-------
I
T
K
K
---
D
D
----
I
K
D
R
V
T
Y
T
C
M
K
Y
L
L
M
A
M
Q
-
G
--------
T
--
G
G
P
K
A
I
N
N
E
E
H
A
K
L
F
FQLSNYDD
L
T
D
A
N
H
D
G
L
E
L
I
K
K
L
D
KEQ
K
E
V
A
F
H
V
N
N
F
T
H
L
V
T
T
L
G
M
A
L
Y
K
E
G
H
Q
K
N
D
E
A
M
L
G
M
H
T
P
I
T
M
L
S
D
Q
V
R
V
L
I
L
Y
L
I
D
E
I
V
H
A
I
H
T
NSNQS
N
D
E
L
I
D
G
L
K
P
K
V
R
I
V
I
N
E
F
H
A
T
L
M
M
GIDK
M
K
F
Y
S
L
N
E
L
R
E
I
V
N
D
K
I---------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
50.34
14%
-78
* C5 *
4HU8
3
?
A:
[3-452]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
E
I
T
L
T
IG
Q
Q
K
D
LASMVPAKFAG
Q
E
L
S
W
T
S
SDPET
A
S
V
T
DKG
I
V
T
A
L
K
FSSGGANLFLKAP
A
T
G
E
A
I
I
T
V
T
A
GK
Q
S
H
S
V
K
V
I
T
T
V
K
G
K
----
E
D
I
E
K
L
P
--------
P
L
K
-
D
H
F
-
K
-----
D
Y
F
L
I
---
G
N
I
F
N
N
R
D
V
S
G
S
---
M
M
----
D
N
D
W
L
A
H
H
---
Y
A
I
L
T
P
E
-
N
H
M
K
P
S
N
L
T
N
--
N
R
N
E
T
T
G
E
I
T
Y
T
F
S
T
A
D
R
M
V
N
A
A
I
A
E
G
L
K
I
H
G
H
T
LLWHQQIP
P
W
Q
R
S
MESAA
K
D
A
A
L
S
V
M
K
K
Y
I
T
E
V
M
T
H
Y
KGKIYSWDVLNEIFPDGRGDNWTTAMRPEN
P
W
F
K
S
IGSD
F
V
Y
E
A
Y
L
A
A
R
Q
A
DPN
A
I
L
Y
Y
N
D
Y
NMDQ
A
G
K
A
A
L
I
A
A
M
V
R
D
V
N
A
K
Y
K
Q
A
YPRETRLLIE
G
I
G
MQSHHNMDVP
A
S
N
I
R
N
T
I
N
R
Y
R
E
L
G
V
K
I
S
VS
E
L
D
I
L
CMG
W
S
A
F
R
G
S
TGQGADKDDMTIAT
N
R
N
I
L
D
Q
A
Y
K
F
N
E
Y
M
K
L
Y
L
E
N
SDIIE
R
V
S
M
WGVSDRYSWRSGGLPLLFDADN
K
A
K
P
A
Y
Y
S
F
V
R
A
R
E
D
Y
E
A
A
K
A
3
PsiBlast_PDB
43.74
33%
-49
- C3 -
4WID
1
?
A:
[156-217]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
Q
I
V
--------
Q
Y
A
V
N
S
S
-
S
----
L
E
K
F
V
M
---
L
--
I
----
T
K
K
D
---
D
I
----
K
D
-
R
V
T
Y
T
C
M
K
Y
L
L
M
A
M
Q
-
G
T
--
G
G
P
K
A
I
--
N
N
E
E
H
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
40.43
12%
-112
- C3 -
2KK1
-
A:
[71-96]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
C
S
--------
G
Y
V
-
D
C
I
P
Q
T
---
R
N
K
F
A
F
---
R
E
A
V
--
S
K
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
39.97
50%
-13
- C3 -
3MIX
-
FLHA_BACSU
A:
[611-634]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
----
S
I
V
R
S
V
A
--------
K
E
A
-
E
Q
L
-
S
L
---
R
Q
E
T
A
I
---
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
39.96
16%
-93
- C3 -
1ZZP
-
A:
[72-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
C
V
--------
S
Y
V
-
D
S
I
Q
Q
M
---
R
N
K
F
A
F
---
R
E
A
I
--
N
K
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
37.05
45%
-68
- C1 -
3CGG
4
?
A:
[94-119]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
--
G
D
L
S
V
D
---
Q
I
----
S
E
-------
T
D
F
D
L
I
V
S
A
-
G
N
V
M
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
36.73
24%
-11
* C3 *
2W8X
1
?
A:
[1-72]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
N
C
N
K
R
E
G
P
C
S
Q
R
S
L
C
E
CDPNLQLG
R
H
S
-
D
Q
L
-
W
H
---
Y
N
L
R
T
N
---
R
C
E
R
--
G
G
Y
R
D
N
CNS
H
S
----
S
S
G
A
C
V
M
A
C
E
R
----------------------------
I
H
H
H
H
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
30.63
18%
-85
- C3 -
3TQM
1
?
A:
[11-52]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
----
S
P
A
L
R
E
L
T
E
K
K
L
H
R
I
Q
P
C
R
D
E
I
S
N
I
H
I
I
F
H
I
N
K
L
K
K
I
V
D
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
28.43
12%
-44
- C3 -
3P0U
-
NR2C2_HUMAN
A:
[409-447]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
----
R
L
L
F
L
S
M
--------
H
W
A
-
R
S
I
-
P
A
---
F
Q
A
L
G
Q
---
D
C
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
28.42
17%
-4
- C3 -
2Q97
1
?
T:
[1-109]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQQELGLLRPEERLIAGQAKA
A
A
L
Q
T
V
----
H
Q
L
G
A
V
A
--------
L
T
P
-
E
Q
A
-
K
A
---
A
L
L
D
E
I
---
L
R
A
T
--
Q
N
L
D
L
R
---
K
Y
ENLN
T
E
Q
Q
K
A
Y
E
Q
V
Q
R
D
L
S
Q
L
S
-
P
E
T
K
A
L
L
I
E
N
--
Q
R
K
E
K
T
L
L
E
K
A
R
K
L
F
QR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
25.75
15%
-28
- C3 -
1OVL
-
NR4A2_HUMAN
A:
[83-108]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
----
G
S
M
E
I
I
R
--------
G
W
A
-
E
K
I
-
P
G
---
F
A
D
L
P
K
---
A
D
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
21.39
20%
-10
- C3 -
1N83
1
A:
[74-98]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
----
E
A
I
Q
Y
V
V
--------
E
F
A
-
K
R
I
-
D
G
---
F
M
E
L
C
Q
---
N
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
20.53
15%
-14
- C3 -
1G2N
-
?
A:
[50-85]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
N
----
K
Q
I
A
A
L
V
--------
V
W
A
-
R
D
I
-
P
H
---
F
S
Q
L
E
M
---
E
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
20.52
20%
-5
- C3 -
3VI8
1
A:
[85-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
----
E
T
V
T
E
L
T
--------
E
F
A
-
K
A
I
-
P
G
---
F
A
N
L
D
L
---
N
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------