@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1423: (2016-03-25 )
MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMIVIYRESKENKEIELP
Atome Classification :
(20 SA)
--------------------------------------------------------------......-...10........20----......------..30.....-------------.-----.--.40.-.-.--------....--.---------50...--...--------..60...--.---....70........-80.---.......90......--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------MLT
G
K
Q
-
K
R
Y
L
R
S
L
A
HNI
D
P
I
F
----
Q
IGKGG------I
N
E
N
M
I
K
Q
I
-------------
D
-----
D
--
T
LEN-
R
-
E
--------
L
I
K
V
--
H
---------
V
LQNN--FD
D
--------
K
K
E
L
A
E
T
--
L
---
S
E
A
T
R
S
E
L
V
Q
V
I
G
S
-
M
I
V
---
I
Y
RESKEN-KEIELP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
90.42
100%
-112
- C3 -
1RQ8
-
?
A:
[1-96]
--------------------------------------------------------------
M
L
T
G
K
Q
-
K
R
Y
L
R
S
L
A
H
N
I
D
P
I
F
----
Q
I
G
K
G
G
------
I
N
E
N
M
I
K
Q
I
-------------
D
-----
D
--
T
L
E
N
-
R
-
E
--------
L
I
K
V
--
H
---------
V
L
Q
N
N
--
F
D
D
--------
K
K
E
L
A
E
T
--
L
---
S
E
A
T
R
S
E
L
V
Q
V
I
G
S
-
M
I
V
---
I
Y
R
E
S
K
E
N
-
K
E
I
E
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
90.25
100%
-114
- C3 -
1RQ8
-
?
A:
[1-95]
--------------------------------------------------------------
M
L
T
G
K
Q
-
K
R
Y
L
R
S
L
A
H
N
I
D
P
I
F
----
Q
I
G
K
G
G
------
I
N
E
N
M
I
K
Q
I
-------------
D
-----
D
--
T
L
E
N
-
R
-
E
--------
L
I
K
V
--
H
---------
V
L
Q
N
N
--
F
D
D
--------
K
K
E
L
A
E
T
--
L
---
S
E
A
T
R
S
E
L
V
Q
V
I
G
S
-
M
I
V
---
I
Y
R
E
S
K
E
N
-
K
E
I
E
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
77.83
36%
-131
- C3 -
1JO0
5
Y1333_HAEIN
A:
[3-96]
---------------------------------------------------------------
L
S
T
K
Q
-
K
Q
F
L
K
G
L
A
H
H
L
N
P
V
V
----
M
L
G
G
N
G
------
L
T
E
G
V
L
A
E
I
-------------
E
-----
N
--
A
L
N
H
-
H
-
E
--------
L
I
K
V
--
K
---------
V
A
G
A
D
--
R
E
T
--------
K
Q
L
I
I
N
A
--
I
---
V
R
E
T
K
A
A
Q
V
Q
T
I
G
H
-
I
L
V
---
L
Y
R
P
S
E
E
A
-
K
-
I
Q
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_CBE
77.40
36%
-128
- C3 -
1JO0
3
Y1333_HAEIN
B:
[3-96]
---------------------------------------------------------------
L
S
T
K
Q
-
K
Q
F
L
K
G
L
A
H
H
L
N
P
V
V
----
M
L
G
G
N
G
------
L
T
E
G
V
L
A
E
I
-------------
E
-----
N
--
A
L
N
H
-
H
-
E
--------
L
I
K
V
--
K
---------
V
A
G
A
D
--
R
E
T
--------
K
Q
L
I
I
N
A
--
I
---
V
R
E
T
K
A
A
Q
V
Q
T
I
G
H
-
I
L
V
---
L
Y
R
P
S
E
E
A
-
K
-
I
Q
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
76.94
38%
-125
- C3 -
1LN4
-
YHBY_ECOLI
A:
[3-96]
---------------------------------------------------------------
L
S
T
K
Q
-
K
Q
H
L
K
G
L
A
H
P
L
K
P
V
V
----
L
L
G
S
N
G
------
L
T
E
G
V
L
A
E
I
-------------
E
-----
Q
--
A
L
E
H
-
H
-
E
--------
L
I
K
V
--
K
---------
I
A
T
E
D
--
R
E
T
--------
K
T
L
I
V
E
A
--
I
---
V
R
E
T
G
A
C
N
V
Q
V
I
G
K
-
T
L
V
---
L
Y
R
P
T
K
E
R
-
K
-
I
S
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
76.38
38%
-122
- C3 -
1LN4
-
YHBY_ECOLI
A:
[1-98]
-------------------------------------------------------------M
D
L
S
T
K
Q
-
K
Q
H
L
K
G
L
A
H
P
L
K
P
V
V
----
L
L
G
S
N
G
------
L
T
E
G
V
L
A
E
I
-------------
E
-----
Q
--
A
L
E
H
-
H
-
E
--------
L
I
K
V
--
K
---------
I
A
T
E
D
--
R
E
T
--------
K
T
L
I
V
E
A
--
I
---
V
R
E
T
G
A
C
N
V
Q
V
I
G
K
-
T
L
V
---
L
Y
R
P
T
K
E
R
-
K
-
I
S
L
P
L
E------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
76.38
38%
-122
- C3 -
1LN4
-
YHBY_ECOLI
A:
[1-98]
-------------------------------------------------------------M
D
L
S
T
K
Q
-
K
Q
H
L
K
G
L
A
H
P
L
K
P
V
V
----
L
L
G
S
N
G
------
L
T
E
G
V
L
A
E
I
-------------
E
-----
Q
--
A
L
E
H
-
H
-
E
--------
L
I
K
V
--
K
---------
I
A
T
E
D
--
R
E
T
--------
K
T
L
I
V
E
A
--
I
---
V
R
E
T
G
A
C
N
V
Q
V
I
G
K
-
T
L
V
---
L
Y
R
P
T
K
E
R
-
K
-
I
S
L
P
L
E------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
76.18
35%
-129
- C3 -
1JO0
5
Y1333_HAEIN
A:
[2-96]
--------------------------------------------------------------
T
L
S
T
K
Q
-
K
Q
F
L
K
G
L
A
H
H
L
N
P
V
V
----
M
L
G
G
N
G
------
L
T
E
G
V
L
A
E
I
-------------
E
-----
N
--
A
L
N
H
-
H
-
E
--------
L
I
K
V
--
K
---------
V
A
G
A
D
--
R
E
T
--------
K
Q
L
I
I
N
A
--
I
---
V
R
E
T
K
A
A
Q
V
Q
T
I
G
H
-
I
L
V
---
L
Y
R
P
S
E
-
E
-
A
K
I
Q
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
50.03
24%
-105
- C3 -
1JBK
1
CLPB_ECOLI
A:
[1-195]
--------------------------HM
Q
A
L
K
K
YTID
L
T
E
R
A
E
Q
GKLDPVIGR
D
E
E
I
R
R
T
I
Q
V
L
Q
R
R
T
-
K
N
---------
N
P
V
L
I
G
E
P
G
V
G
K
T
A
------
I
V
E
G
L
A
Q
R
I
-------------
I
N
GEVP
E
--
G
L
K
G
-
R
-
R
--------
V
L
A
L
D
M
G
---------
A
L
V
A
G
--
A
K
Y
--------
R
G
E
F
E
E
R
--
L
---
K
G
V
L
N
-
D
L
A
K
Q
E
G
N
-
V
I
L
---
F
I
D
E
---------
L
H
T
M
V
GAMDA
G
N
M
L
K
P
A
L
A
R
GE
L
H
C
V
G
A
T
T
L
D
E
Y
R
Q
YIEKD
A
A
L
E
R
R
F
Q
K
V
F
V
A
EPS
V
E
D
T
I
AILR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
44.60
14%
-80
- C3 -
2LC0
-
FHAA_MYCTU
A:
[1-132]
------------------------------------------------------------M
G
S
Q
K
R
L
V
-
Q
R
V
E
R
K
L
E
Q
T
V
G
D
A
F
----
A
R
I
F
G
G
SIV
P
Q
E
V
E
A
L
L
R
R
E
A
-------------
A
-----
D
--
G
I
Q
S
-
L
-
Q
GN
R
L
L
A
P
N
E
Y
I
I
--
T
---------
L
G
V
H
D
--
F
E
K
L
GAD
P
E
L
K
S
T
G
F
A
R
D
--
L
---
A
D
Y
I
Q
E
Q
G
W
Q
T
Y
G
D
-
V
V
V
---
R
F
E
Q
S
S
N
L
-
H
T
G
Q
F
R
A
R
G
T
VNPDVETH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
41.62
22%
-28
- C3 -
4IMP
1
?
A:
[31-550]
SD
P
A
A
G
W
F
W
Q
A
V
A
R
QD
L
K
S
V
S
D
A
L
DLDADAP
L
S
A
T
L
P
A
L
S
V
W
H
R
Q
E
R
E
R
V
L
A
D
G
W
R
Y
R
V
D
W
V
R
V
A
P
Q
P
-
V
R
R
T
R
E
T
W
L
L
V
V
P
---------
P
G
G
------
I
E
E
A
L
V
E
R
L
-------------
T
-----
D
--
A
L
N
T
-
R
-
G
--------
I
S
T
L
--
R
---------
L
D
V
P
P
--
A
A
T
--------
S
G
E
L
A
T
E
--
L
---
R
A
A
A
D
G
D
P
V
K
A
I
L
S
-
L
T
A
---
L
D
-
E
R
P
H
P
-
E
C
K
D
V
P
S
G
I
A
L
L
L
N
L
V
K
A
L
G
E
A
DLR
I
P
L
W
T
I
T
R
GAVKAGPADRLLR
P
M
Q
A
Q
A
W
G
L
G
R
V
A
A
L
E
HPERWG
G
L
I
D
L
P
DSLDGD
V
L
T
R
L
G
E
A
L
T
NGLAED
Q
L
A
I
R
QS
G
V
L
A
R
R
L
V
P
A
P
ANQPAGRK
W
R
P
R
G
S
A
L
I
T
GGLG
A
V
G
A
Q
V
A
R
W
L
A
E
I
GAE
R
I
V
L
T
S
RRGNQAAG
A
A
E
L
E
A
E
L
R
A
L
G
A
Q
V
S
I
V
ACDVTD
R
A
E
M
S
A
L
L
A
E
F
DVT
A
V
F
H
A
A
G
V
G
R
L
L
P
LAETD
Q
N
G
L
A
E
I
C
A
A
K
V
R
G
A
Q
V
L
D
E
L
C
DSTDLDAF
V
L
F
S
S
GAGVWGGGGQ
G
A
Y
G
A
A
N
A
F
L
D
T
L
A
E
Q
R
R
A
R
G
L
P
A
T
S
I
S
W
G
S
WAGGGMADG
A
A
G
E
H
L
R
R
R
G
I
R
P
M
P
A
A
S
A
I
L
A
L
Q
E
V
L
D
Q
DET
C
V
S
I
A
DVD
W
D
R
F
V
P
T
F
A
A
TRATRLFDEV
P
A
A
R
K
AM
12
HHSearch
39.03
21%
-110
- C3 -
3ZIG
-
?
A:
[18-79]
--------------------------------------------------------------------------------------------------------
D
L
K
R
V
-------------
S
-----
D
--
E
L
K
S
-
G
-
N
--------
I
V
I
V
--
E
---------
L
T
P
L
E
QK
P
E
L
--------
L
K
K
I
A
E
Q
--
L
M
T
T
A
S
I
I
G
G
D
Y
A
K
I
C
G
S
P
L
K
V
---
I
L
T
P
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
38.48
16%
-32
- C3 -
3CO5
1
?
A:
[8-143]
------------------------------------------------------------GN
S
A
A
I
Q
E
M
N
R
E
V
E
A
A
A
K
R
T
S
P
V
F
----
L
T
G
E
A
G
------
S
P
F
E
T
V
A
R
Y
FHKNGTPWVSPAR
V
-----
E
--
Y
L
I
D
M
P
M
E
--------
L
L
Q
K
--
A
EG
G
V
L
Y
VGD
I
A
Q
Y
S
--
R
N
I
--------
Q
T
G
I
T
F
I
--
I
---
G
K
A
E
R
C
R
-
V
R
V
I
A
S
-
C
S
Y
---
A
A
G
S
D
S
C
E
-
E
K
L
A
G
L
FS
E
S
V
V
R
I
P
P
LS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
36.39
33%
-19
- C3 -
1USY
1
HISZ_THEMA
A:
[126-198]
----------------------------------------------------------------------------------
I
V
----
E
I
G
H
T
G
------
V
Y
E
D
L
L
K
E
I
-------------
P
-----
K
--
D
L
H
E
-
K
-
V
--------
L
-------------------
N
--
L
I
D
--------
T
K
N
L
A
E
I
E
F
L
---
S
H
M
K
K
I
D
L
S
R
V
--
E
-
K
I
I
E
D
S
I
Y
R
R
S
P
E
H
L
K
T
M
D
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
32.23
41%
-33
- C3 -
1UAS
2
A:
[22-52]
---------------------------------------------------------------------------------------------
G
------
I
N
E
Q
I
I
R
E
T
-------------
A
-----
D
--
A
L
V
N
-
T
-
G
--------
L
A
K
L
--
G
---------
Y
Q
Y
V
N
--
I
D
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
29.84
14%
-64
* C3 *
3M20
-
?
A:
[2-43]
---------------------------------------------------------------------------------------------------------------------------------------------------
V
L
I
V
--
Y
---------
G
P
K
L
D
--
V
G
K
--------
K
R
E
F
V
E
R
--
L
---
T
S
V
A
A
E
I
Y
G
M
D
R
S
A
-
I
T
I
---
L
I
H
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
29.34
17%
10
- C3 -
1NH2
-
TOA1_YEAST
B:
[26-43]
-------------------------------------------------------------------------------------------
N
A
G
------
I
D
E
Q
T
L
Q
D
L
-------------
K
-----
N
--
I
W
Q
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
28.18
15%
8
- C3 -
2GUT
-
MED15_HUMAN
A:
[2-78]
--------------------------------------------------------------
G
A
M
G
Q
E
-
T
D
W
------------------
R
S
T
A
------
F
R
Q
K
L
V
S
Q
I
-------------
E
-----
D
--
A
M
R
K
-
A
-
G
--------
V
----------------
A
H
S
K
--
S
S
K
--------
D
M
E
S
H
V
F
--
L
---
K
A
K
T
R
D
E
Y
L
S
L
V
A
R
-
L
I
I
---
H
F
R
D
I
H
N
K
-
K
S
Q
A
S
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
27.76
25%
-8
* C4 *
4COI
1
?
A:
[572-639]
-------------------------------------------------------------------------------------------------------
N
M
V
K
M
I
-------------
A
-----
D
M
G
V
M
Y
F
-
A
-
F
--------
N
T
K
I
--
S
---------
V
C
E
D
G
--
H
A
F
--------
Y
G
E
R
C
P
V
--
C
---
G
K
A
K
V
D
E
Y
M
R
I
V
G
Y
-
L
V
P
---
V
S
A
F
N
K
E
R
-
R
E
I
E
Y
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
26.65
25%
-5
- C4 -
4COJ
2
?
A:
[572-633]
-------------------------------------------------------------------------------------------------------
N
M
V
K
M
I
-------------
A
-----
D
M
G
V
M
Y
F
-
A
-
F
--------
N
T
K
I
--
S
---------
V
C
E
D
G
--
H
A
F
--------
Y
G
E
R
C
P
V
--
C
---
G
K
A
K
V
D
E
Y
M
R
I
V
G
Y
-
L
V
P
---
V
S
A
F
N
K
E
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------