@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1426: (2016-03-25 )
MGLVRKFFMPNSYVQSIFQIDLDKLVDKGVKGIITDLDNTLVGWDVKEPTERVKAWFKEANEKGITITIVSNNNESRVASFSQHLDIDFIFKARKPMGKAFDKAITKMNIRPDQTVVIGDQMLTDVFGGNRRGLYTIMVVPVKRTDGFITKVNRLIERRLLRHFSKKGYITWEEN
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------......--...10........20---........30.---------....--...40.---------..-------------.-----------------------...--.50---........60........70.-----...---...---------------.80...-----.-...-.-----90-------.----------..-----......100.......110.......120........130......---.140.......150.------......160.......170...------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------MG
L
V
R
K
--FFM
P
N
S
Y
V
Q
S
I
F
Q
I
D
---
L
D
K
L
V
D
KG
V
K
G
---------
I
I
T
D--LDN
T
L
V---------GW-------------D-----------------------VK
E
--
P
T
E
---
R
V
K
A
W
F
K
EANEK
G
I
T
I
T
I
V
SN-----NN
E
---
S
R
V
---------------
A
S
F
S
QH-----L-
D
I
D
-
F
-----
I
--------
F
----------KA-----RKP
M
G
K
A
F
D
K
A
I
T
KMNIRPD
Q
T
V
V
I
G
D
Q
-
M
L
T
D
V
FGGNRR
G
L
Y
T
I
M
---
V
V
P
VKRTD
G
F
I
T
K
V
N
------
R
L
I
E
R
R
L
L
R
H
F
SKKG
Y
I
T
WEEN------------------------------------------------------------------------------------
31
HHSearch
87.20
25%
-72
- C1 -
2PR7
3
?
A:
[1-123]
----------------------------------------------------------------------------------------------------------------------------------------------------------
G
M
R
G
---------
L
I
V
D
--
Y
A
G
V
L
D
---------
G
T
-------------
D
-------------------------
E
--
D
Q
R
---
R
W
R
N
L
L
A
A
A
K
K
N
G
V
G
T
V
I
L
S
N
-----
D
P
G
---
G
L
G
---------------
A
A
P
I
R
E
-----
L
-
E
T
N
G
V
-----
V
D
K
V
L
L
SGE
L
----------
G
V
-----
E
K
P
E
E
A
A
F
Q
A
A
A
D
A
I
D
L
P
M
R
D
C
V
L
V
D
D
S
-
I
-
L
N
V
R
G
A
V
E
A
G
L
V
G
V
Y
---
Y
Q
Q
F
D
R
A
------------------------------------------------------------------------------------------------------------------------
28
HHSearch
80.22
21%
-81
- C1 -
3IB6
-
?
A:
[2-145]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
H
---------
V
I
W
D
--
M
G
E
T
L
N
---------
T
V
P
NTRYDHHPLDTY
P
-----------------------
E
V
V
--
L
R
K
---
N
A
K
E
T
L
E
K
V
K
Q
L
G
F
K
Q
A
I
L
S
N
-----
T
A
T
SD
T
E
V
I
---------------
K
R
V
L
T
N
-----
F
-
G
I
I
D
Y
-----
F
D
F
I
Y
----
A
SNSELQPG--
K
M
-----
E
K
P
D
K
T
I
F
D
F
T
L
N
A
L
Q
I
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E
A
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M
V
G
N
T
F
E
-
S
D
I
I
G
A
N
R
A
G
I
H
A
I
W
---
L
Q
N
P
E
V
-------------------------------------------------------------------------------------------------------------------------
46
Fugue
74.62
18%
-74
- C1 -
1K1E
2
KDSC_HAEIN
A:
[4-180]
---------------------------------------------------------------------------------------------------------------------------------------
K
L
E
N
I
K
F
V
I
---
T
D
------
V
D
G
---------
V
L
T
D
GQ
L
H
Y
D
A
N
---------
G
E
-------------
A
-----------------------
I
K
S
--
F
H
V
---
R
D
G
L
G
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M
L
M
D
A
D
I
Q
V
A
V
L
S
G
-----
R
D
S
---
P
I
L
---------------
R
R
R
I
A
D
-----
L
-
G
I
K
-
L
-----
F
--------
F
----------
L
G
-----
K
L
E
K
E
T
A
C
F
D
L
M
K
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A
G
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A
E
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T
A
Y
I
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D
D
--
S
V
D
L
P
A
F
A
A
C
G
T
S
F
A
V
ADA
P
I
Y
V
K
N
A
V
D
H
V
L
S
T
H
GGKG
A
F
R
E
M
S
D
M
I
L
Q
A
Q
G
K
S
S
V
F
D
T
A
Q
G
F
L
K
S
VKSMGQ--------------------------------------------------------------------------
9
PsiBlast_PDB
72.18
24%
-76
- C1 -
3N07
1
?
A:
[21-127]
-------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
K
Q
I
K
L
---------
L
I
C
D
--
V
D
G
V
F
S
DG
L
I
Y
M
G
NQ
G
E
-------------
E
-----------------------
L
K
T
--
F
H
T
---
R
D
G
Y
G
V
K
A
L
M
N
A
G
I
E
I
A
I
I
T
G
-----
R
R
S
---
Q
I
V
---------------
E
N
R
M
K
A
-----
L
-
G
I
S
-
L
-----
I
--------
Y
----------
Q
G
-----
Q
D
D
K
V
Q
A
Y
Y
D
I
C
Q
K
L
A
I
A
P
E
Q
T
G
Y
I
G
D
D
-
L
I
-------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
70.63
16%
-57
- C1 -
1U7P
2
MGDP1_MOUSE
A:
[1-164]
-----------------------------------------------------------------------------------------------------------------------------------
M
T
R
L
P
K
L
A
V
F
D
L
D
YTL
W
P
F
W
V
D
T
H
V
D
P
---------
P
F
H
K
--
S
S
D
G
T
V
---------
R
D
-------------
R
-----------------------
R
G
Q
--
N
I
Q
LYP
E
V
P
E
V
L
G
R
L
Q
S
L
G
V
P
V
A
A
A
S
R
-----
T
S
E
---
I
Q
G
---------------
A
N
Q
L
L
E
L
F
DLG
K
-
Y
F
I
-
Q
-----
R
--------
E
----------
I
Y
-----
P
G
S
K
V
T
H
F
E
R
L
H
H
K
T
G
V
P
F
S
Q
M
V
F
F
D
D
E
--
N
R
N
I
I
D
V
G
R
L
G
V
T
C
I
H
---
I
-----
R
D
G
M
----
S
------
L
Q
T
L
T
Q
G
L
E
T
F
A
K
A
Q
A
G
L
----------------------------------------------------------------------------------------
24
HHSearch
70.24
15%
-70
* C1 *
2WM8
1
MGDP1_HUMAN
A:
[23-180]
-------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
R
L
P
K
L
---------
A
V
F
D
--
L
D
Y
T
L
W
---------
P
F
-------------
W
VDTHVDPP
F
H
K
S
SDG
T
V
R
D
RRG
Q
D
V
R
--
L
Y
P
---
E
V
P
E
V
L
K
R
L
Q
S
L
G
V
P
G
A
A
A
S
R
-----
T
S
E
I
--
E
G
A
---------------
N
Q
L
L
E
L
-----
F
-
D
L
F
R
Y
-----
F
V
H
R
-----
E
----------
I
Y
-----
P
G
S
K
I
T
H
F
E
R
L
Q
Q
K
T
G
I
P
F
S
Q
M
I
F
F
D
D
E
-
R
-
R
N
I
V
D
V
S
K
L
G
V
T
C
I
H
---
I
Q
N
G
M
N
L
Q
T
L
S
Q
G
L
E
------
T
F
A
-------------------------------------------------------------------------------------------------------
54
Fugue
65.96
16%
-45
- C1 -
2GMW
1
GMHBB_ECOLI
A:
[24-205]
---------------------------------------------------------------------------------------------------------------------S
V
P
A
I
F
L
D
R
D
GT
I
N
V
D
H
G
Y
V
H
E
I
D
N
F
E
---
F
I
D
G
V
I
D
A
M
R
E
L
K
K
M
G
F
A
L
V
V
V
T
N
--
Q
S
G
I
A
R
---------
G
K
FT
E
A
---------
Q
-----------------------
F
E
T
--
L
T
E
---
W
M
D
W
S
L
A
D
R
D
V
D
L
D
G
I
Y
Y
C
P
H
-----
H
P
Q
---
G
S
V
---------------
E
E
F
R
Q
V
-----
C
-
D
------------------------------
C
-----
R
K
P
H
P
G
M
L
L
S
A
R
D
Y
L
H
I
D
M
A
A
S
Y
M
V
G
D
K
--
L
E
D
M
Q
A
A
V
A
A
N
V
G
T
K
V
---
L
V
R
T
G
K
P
I
T
P
E
A
E
N
A
------
A
D
W
V
L
N
S
L
A
D
L
P
Q
A
I
K
K
-----------------------------------------------------------------------------------------
43
HHSearch
61.66
18%
-54
- C1 -
2YMM
1
?
A:
[100-207]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
--
A
Y
P
---
D
V
A
P
A
L
T
R
L
Q
D
A
G
F
R
L
V
T
L
T
N
-----
S
A
P
---
S
P
A
---------------
P
S
P
L
E
K
-----
A
-
G
I
A
S
F
-----
F
E
A
H
L
T
VHS
S
----------
Q
R
-----
F
K
P
H
P
S
V
Y
D
S
T
A
E
T
L
G
A
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P
E
E
L
C
M
I
A
C
H
-
I
-
W
D
T
I
G
A
Q
A
R
G
W
R
G
G
F
---
V
A
R
P
H
N
T
P
-----------------------------------------------------------------------------------------------------------------------
48
Fugue
61.08
21%
-23
- C1 -
4I9F
2
?
A:
[10-352]
KS
I
A
Q
E
H
DCLLIDLDGTVFCGRQPTGG
A
V
Q
S
L
S
Q
VR
S
R
K
L
F
V
T
NNASRS
A
D
E
V
A
A
H
L
C
E
L
G
F
T
A
T
GEDVVT
S
A
Q
S
A
A
H
L
L
A
G
Q
LAPG
A
R
V
L
I
VGT
E
A
L
A
N
E
V
A
A
V
G
L
R
P
V
R
R
FEDRPD
A
V
V
Q
G
L
---------
S
M
T
T
G
W
S
D
L
A
E
---
A
A
L
A
I
R
A
G
A
L
W
---------
V
A
A
N
--
V
D
P
T
L
P
---------
T
-----------------------------------------------------------
E
R
G
L
L
P
G
----------
N
G
---
S
M
V
---------------
A
A
L
R
T
A
-----
T
-
G
M
D
-------
P
--------
R
----------
V
A
-----
G
K
P
A
P
A
L
M
T
E
A
V
A
R
G
D
--
F
R
A
A
L
V
V
G
D
R
-
L
D
T
D
I
E
G
A
N
A
A
G
L
P
S
L
M
---
V
L
T
G
V
N
S
-----------------
A
W
D
A
V
Y
A
E
P
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R
R
P
T
Y
I
G
H
D
LRSLHQDSKLLAVAPQPG
W
Q
I
D
V
GGGAV
T
V
C
A
N
GIDDGL
S
I
V
R
A
V
A
S
A
V
W
E
A
R
AADLHQR
P
L
R
I
E
A
GD
E
R
A
R
A
A
L
Q
R
W
SLMRSD
35
HHSearch
60.04
15%
-61
- C1 -
1ZRN
1
HAD_PSEUY
A:
[94-200]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
--
P
F
S
---
E
V
P
D
S
L
R
E
L
K
R
R
G
L
K
L
A
I
L
S
N
-----
G
S
P
---
Q
S
I
---------------
D
A
V
V
S
H
-----
A
-
G
L
R
D
G
-----
F
D
H
L
L
S
VDP
V
----------
Q
V
-----
Y
K
P
D
N
R
V
Y
E
L
A
E
Q
A
L
G
L
D
R
S
A
I
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F
V
A
S
N
-
A
-
W
D
A
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G
A
R
Y
F
G
F
P
T
C
W
---
I
N
R
T
G
N
V
------------------------------------------------------------------------------------------------------------------------
44
HHSearch
59.74
17%
-65
- C1 -
2FPR
5
HIS7_ECO57
A:
[13-165]
----------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
K
Y
---------
L
F
I
D
--
R
D
G
T
L
I
---------
S
E
-------------
P
DFQVDRFD---------------
K
L
A
--
F
E
P
---
G
V
I
P
Q
L
L
K
L
Q
K
A
G
Y
K
L
V
M
I
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-----
Q
D
G
---
L
G
T
QSFP
Q
A
D
F
D
G
P
H
N
L
M
M
Q
I
F
T
S
-----
Q
-
G
V
Q
-
F
D
E
V
--
L
I
-------
C
PHLPADEC--
D
C
-----
R
K
P
K
V
K
L
V
E
R
Y
L
----
M
D
R
A
N
S
Y
V
I
G
D
R
-
A
-
T
D
I
Q
L
A
E
N
M
G
I
N
G
L
R
---
Y
D
R
E
T
L
N
------------------------------------------------------------------------------------------------------------------------
27
HHSearch
57.83
15%
-65
- C1 -
3CNH
3
?
A:
[85-190]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
--
P
R
P
---
E
V
L
A
L
A
R
D
L
G
Q
-
R
Y
R
M
Y
S
L
N
N
-----
E
G
R
---
D
L
N
---------------
E
Y
R
I
R
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-----
F
-
G
L
G
E
F
-----
L
LAFFTSSA
L
----------
G
V
-----
M
K
P
N
P
A
M
Y
R
L
G
L
T
L
A
Q
V
R
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E
E
A
V
M
V
D
D
R
-
L
-
Q
N
V
Q
A
A
R
A
V
G
M
H
A
V
Q
---
C
V
D
A
A
Q
L
------------------------------------------------------------------------------------------------------------------------
26
HHSearch
56.91
21%
-44
- C1 -
2GO7
5
?
A:
[84-188]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
--
L
M
P
---
G
A
R
E
V
L
A
W
A
D
E
S
G
I
Q
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F
I
Y
T
H
-----
K
G
N
----
N
A
---------------
F
T
I
L
K
D
-----
L
-
G
V
E
S
Y
-----
F
T
E
I
L
T
SQS
G
----------
F
V
-----
R
K
P
S
P
E
A
A
T
Y
L
L
D
K
Y
Q
L
N
S
D
N
T
Y
Y
I
G
D
R
-
T
-
L
D
V
E
F
A
Q
N
S
G
I
Q
S
I
N
---
F
L
E
S
T
Y
-------------------------------------------------------------------------------------------------------------------------
25
HHSearch
56.35
21%
-38
- C1 -
3D6J
3
?
A:
[88-194]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
--
L
F
P
---
D
T
L
P
T
L
T
H
L
K
K
Q
G
I
R
I
G
I
I
S
T
-----
K
Y
R
---
F
R
I
---------------
L
S
F
L
R
N
-----
H
-
M
P
D
D
W
-----
F
D
I
I
I
G
GED
V
----------
T
H
-----
H
K
P
D
P
E
G
L
L
L
A
I
D
R
L
K
A
C
P
E
E
V
L
Y
I
G
D
S
-
T
-
V
D
A
G
T
A
A
A
A
G
V
S
F
T
G
---
V
T
S
G
M
T
T
------------------------------------------------------------------------------------------------------------------------
36
HHSearch
55.55
15%
-48
- C1 -
2NO4
3
HAD4_BURCE
A:
[104-210]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
--
A
Y
P
---
D
A
A
E
T
L
E
K
L
K
S
A
G
Y
I
V
A
I
L
S
N
-----
G
N
D
---
E
M
L
---------------
Q
A
A
L
K
A
-----
S
-
K
L
D
R
V
-----
L
D
S
C
L
S
ADD
L
----------
K
I
-----
Y
K
P
D
P
R
I
Y
Q
F
A
C
D
R
L
G
V
N
P
N
E
V
C
F
V
S
S
N
-
A
-
W
D
L
G
G
A
G
K
F
G
F
N
T
V
R
---
I
N
R
Q
G
N
P
------------------------------------------------------------------------------------------------------------------------
52
Fugue
54.15
13%
-57
- C1 -
1FEZ
1
PHNX_BACCE
A:
[1-256]
------------------------------------------------------------------------KIE
A
V
I
F
D
W
AGTTVDYGCF
A
P
L
E
V
F
M
E
I
F
H
K
R
G
V
A
I
T
A
E
E
A
R
KPMGLL
K
I
D
H
V
R
A
--
L
T
E
M
P
R
I
A
S
E
W
N
R
V
F
---
R
Q
L
P
T
E
A
D
I
Q
E
---------
M
Y
E
E
--
F
E
E
I
L
F
---------
A
I
-------------
L
-----------------------
P
R
Y
AS
P
I
N
---
A
V
K
E
V
I
A
S
L
R
E
R
G
I
K
I
G
S
T
T
G
-----
Y
T
R
---
E
M
M
---------------
D
I
V
A
K
E
-----
A
-
A
L
Q
-
G
-----
Y
--------
K
PD
F
L
V
T
PDDV
P
A
-----
G
R
P
Y
P
W
M
C
Y
K
N
A
M
E
L
G
V
Y
P
M
N
H
M
I
K
V
G
D
-
T
V
S
D
M
K
E
G
R
N
A
G
M
W
T
V
G
---
V
I
L
G
S
S
E
L
G
L
T
E
E
E
V
------
E
N
M
D
S
V
E
L
R
E
K
I
E
V
V
R
N
R
F
V
E
N
GAHFTIETMQE
L
E
S
V
M
E
H
I
E----------------------------------------------------------------
40
HHSearch
53.47
17%
-46
- C1 -
3M9L
1
?
A:
[69-176]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
R
--
P
A
P
---
G
A
V
E
L
V
R
E
L
A
G
R
G
Y
R
L
G
I
L
T
R
-----
N
A
R
---
E
L
A
---------------
H
V
T
L
E
A
-----
I
-
G
L
A
D
C
FAEAD
V
LGRD----
E
----------
A
P
-----
P
K
P
H
P
G
G
L
L
K
L
A
E
A
W
D
V
S
P
S
R
M
V
M
V
G
D
Y
-
R
-
F
D
L
D
C
G
R
A
A
G
T
R
T
V
L
---
V
N
L
P
D
N
P
------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
53.23
23%
-30
- C1 -
2OM6
2
?
A:
[82-202]
-----------------------------------------------------------------------------------------------------------------------------------------------------
E
L
V
K
R
A
T
A
R
---------
A
I
L
N
--
V
D
E
S
L
V
---------
L
E
-------------
G
-----------------------
T
K
E
--
A
L
Q
---
F
V
K
-------
E
R
G
L
K
T
A
V
I
G
N
V
M
FWP
G
S
Y
---
T
R
L
L
L
-------------
E
R
F
G
L
M
-----
E
-
F
I
D
-
K
-----
T
--------
F
----------
F
A
DEVLS
Y
K
P
R
K
E
M
F
E
K
V
L
N
S
F
E
V
K
P
E
E
S
L
H
I
G
D
T
-
Y
A
E
D
Y
Q
G
A
R
K
V
G
M
W
A
V
W
---
I
------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
51.34
20%
-48
- C1 -
2B0C
1
YIHX_ECOLI
A:
[90-197]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
--
L
R
P
---
E
V
I
A
I
M
H
K
L
R
E
Q
G
H
R
V
V
V
L
S
N
-----
T
N
R
---
L
H
T
---------------
T
F
W
P
E
E
-----
Y
P
E
I
R
D
A
-----
A
D
H
I
Y
L
SQD
L
----------
G
M
-----
R
K
P
E
A
R
I
Y
Q
H
V
L
Q
A
E
G
F
S
P
S
D
T
V
F
F
D
D
N
-
A
-
D
N
I
E
G
A
N
Q
L
G
I
T
S
I
L
---
V
K
D
K
T
T
I
------------------------------------------------------------------------------------------------------------------------
39
HHSearch
50.46
14%
-58
- C1 -
3UMB
1
?
A:
[97-204]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
L
S
--
A
F
P
---
E
N
V
P
V
L
R
Q
L
R
E
M
G
L
P
L
G
I
L
S
N
-----
G
N
P
---
Q
M
L
---------------
E
I
A
V
K
S
-----
A
-
G
M
S
G
L
-----
F
D
H
V
L
S
VDA
V
----------
R
L
-----
Y
K
T
A
P
A
A
Y
A
L
A
P
R
A
F
G
V
P
A
A
Q
I
L
F
V
S
S
N
-
G
-
W
D
A
C
G
A
T
W
H
G
F
T
T
F
W
---
I
N
R
L
G
H
P
------------------------------------------------------------------------------------------------------------------------