@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1620: (2016-03-27 )
MITFENIQQLEKYTLMTMHGLFNQLKLGIISIDNAEHTLFTPYMMESLSSLGVKPDIIDLIHKGTELEDFAAFNLSIEDTVTVCLQRTEELLNQYKNVEFNDKILINWRIIQE
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........-10........20------------.......-------.30..---.--.....40.....----...50-..-.-------..-------...-------60---........-----70....-....80..----......90........100--------........110.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MI
T
F
E
N
I
Q
Q
-
L
E
K
Y
T
L
M
T
M
H
G
L
------------
F
N
Q
L
K
L
G
-------
I
I
S
ID---N--AEH
T
L
F
T
P
Y
M
M
E
----
S
L
S
SL-GV-K-------
P
D
-------
I
I
D
-------
L
I---HKGTEL
E
D
-----
F
A
A
FNL-S
I
E
D
T
V
T
V
----
C
L
Q
R
T
E
E
L
L
N
Q
YKNVEFN---------
D
K
I
L
I
N
W
R
I
IQE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
78.69
20%
-106
* C4 *
4DY5
3
?
A:
[1-111]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGKNV
N
V
E
F
D
K
G
Q
N
-
S
A
R
Y
S
G
V
I
K
G
Y
D
------------
Y
D
T
Y
N
F
Q
A
R
KG
Q
K
V
H
V
S
I
S
---
N
EG
A
D
T
Y
L
F
G
P
G
I
S
D
----
S
--------------------------
V
D
-------
L
S
---
R
Y
S
S
E
L
D
G
-----
N
G
Q
Y
T
L
-
P
A
S
G
K
Y
E
L
----
K
V
L
Q
T
R
N
E
A
R
K
N
K
A
K
K
Y
S
---------
V
N
I
Q
I
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
69.08
23%
-59
- C1 -
4CT3
9
?
A:
[2-165]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
T
Q
A
E
I
N
K
R
L
D
A
Y
A
K
G
T
V
D
S
P
YRVK
K
A
T
S
Y
D
PS
F
G
V
M
E
A
G
-------
A
I
D
A
D
GYY
H
--
A
Q
Q
D
L
I
T
D
Y
V
L
W
L
T
D
N
K
V
R
T
W
-
G
N
-
A
-------
K
D
-------
Q
I
K
QSYGTG
F
K
I
---
H
E
N
K
P
S
T
V
P
K
KG
W
I
A
V
F
T
S
G
S
Y
E
Q
W
G
H
I
----
G
I
V
Y
D
G
G
N
T
S
T
F
T
I
L
E
Q
N
WNGYANK
K
P
T
K
R
V
D
N
Y
Y
G
L
T
H
F
I
E
I
P
V
K
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
62.37
16%
-108
* C3 *
1XN7
-
FEOC_ECOLI
A:
[1-78]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
S
L
I
Q
V
R
D
L
L
A
L
R
G
R
M
E
A
A
Q
I
------------
S
Q
T
L
N
T
P
---------------------
Q
P
M
I
N
A
M
L
Q
----
Q
L
E
S
M
-
G
---------------------------------------------------------
K
A
V
R
I
----
Q
E
E
P
D
G
C
L
S
G
S
C
K
S
C
P
E
G
---------
K
A
C
L
R
E
W
W
A
L
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
58.69
17%
-10
- C3 -
4TWA
11
SYP_PLAF7
A:
[3-497]
MAITSKKIEN
F
S
D
W
Y
T
Q
V
I
V
K
S
EL
I
E
Y
Y
DISGCYILR
P
A
A
Y
Y
I
W
E
C
V
Q
A
F
F
N
K
E
I
K
K
L
N
V
E
N
S
Y
F
PLFVTKNKL
E
K
E
K
N
H
IEGFSPEVAWVTKYGDSNLPEEIAIRPTS
E
T
I
M
Y
S
V
FPKWIRSYRDLP
L
K
L
N
Q
W
N
T
V
V
R
WEFK
Q
P
T
P
FIRTR
E
F
L
W
Q
E
G
H
T
A
H
KN
E
E
E
A
V
K
L
V
F
D
I
L
D
L
Y
R
R
W
Y
E
EYLA
V
P
I
I
K
G
I
K
S
EGEKFGGAN
F
T
S
T
A
E
A
F
I
SENG
R
A
I
Q
A
A
T
S
H
YLGT
N
F
A
K
M
F
K
I
E
F
E
D
E
N
E
-
V
K
Q
Y
V
H
Q
T
S
W
G
C
------------
T
T
-
R
S
I
G
-------
I
M
I
M
T
---
H
--
G
D
D
K
G
L
V
L
P
P
N
V
----
S
K
Y
K
V
-
V
I
-
V
-------
P
------------------
I
F
---
Y
K
T
T
D
E
N
A
-----
I
H
S
Y
C
K
-
D
I
E
K
I
L
K
--------------
N
A
Q
I
N
C
V
Y
D
---------
D
R
A
S
Y
S
P
G
Y
K
F
N
H
W
E
L
R
GIP
I
R
I
E
V
G
P
K
D
L
Q
N
N
S
C
V
I
V
R
RDNN
E
K
C
N
V
K
KES
V
L
L
E
T
Q
Q
M
L
V
D
I
H
K
N
L
F
L
K
A
K
K
K
L
D
D
S
I
V
Q
V
TSFSE
V
M
N
A
L
N
K
K
K
M
V
L
A
P
W
CEDI
A
T
E
E
E
I
K
K
E
T
Q
R
L
SLTLSGAMKPLCIPLDQPPMPPNMKCFWSGKPAK
R
W
C
L
F
G
R
SY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
57.93
19%
-104
- C5 -
2J5Y
-
PAB_FINMA
A:
[13-44]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
I
A
----
E
L
K
K
A
-
G
I
T
S
-------
D
F
-------
Y
F
N
-------
A
I
---
N
K
A
K
T
V
E
E
-----
V
N
A
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
57.06
18%
-27
- C2 -
4UMW
2
?
A:
[124-730]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RLKEN
L
P
L
I
T
L
I
V
M
M
A
I
S
W
G
L
E
Q
FN
H
P
F
G
Q
L
A
F
I
A
T
T
L
V
G
L
Y
P
I
A
R
Q
A
L
R
L
I
K
S
G
S
Y
F
A
I
E
T
-
L
M
S
V
A
A
I
G
A
L
F
I
------------
G
A
T
A
E
A
A
-------
M
V
L
L
L
---
F
--
L
I
G
E
R
L
E
G
W
A
A
S
----
R
V
S
A
L
M
A
L
-
K
-------
P
E
-------
T
A
T
-------
R
L
---
R
N
G
-
E
R
E
E
-----
V
A
I
N
S
L
-
R
P
G
D
V
I
E
V
A
AGG
R
L
P
A
D
G
K
L
L
S
--
P
F
A
S
F
D
---------
E
S
A
L
T
G
E
S
I
P
V
E
R
A
TG
D
K
V
P
A
GATSVD
R
L
V
T
L
E
VLSEPGAS
A
I
D
R
I
L
K
L
I
E
E
A
E
E
R
R
A
P
I
E
R
F
I
D
R
F
S
R
I
Y
T
P
A
I
M
A
V
A
L
L
V
T
L
VPPLLFAAS
W
Q
E
W
I
Y
K
G
L
T
L
L
L
I
G
CPCALVI
S
T
P
A
A
I
T
S
G
L
A
A
A
A
R
R
G
A
L
I
K
G
G
A
A
L
E
Q
L
G
R
VT
Q
V
A
F
D
K
TGTLTVG
K
P
R
V
T
A
I
H
P
A
TGIS
E
S
E
L
L
T
L
A
A
A
V
E
QGATH
P
L
A
Q
A
I
V
R
E
A
Q
V
A
ELAIPTAESQRALVG
S
G
I
E
A
Q
V
NG
E
R
V
L
I
C
A
AGKHPADAF
A
G
L
I
N
E
L
E
S
A
G
Q
T
V
V
L
V
V
R
NDDVL
G
I
I
A
L
Q
DTLRAD
A
A
T
A
I
S
E
L
N
A
L
G
V
K
G
V
I
L
T
GDN
P
R
A
A
A
A
I
A
G
E
L
G
L
E
F
K
A
GLL
P
E
D
K
V
K
A
V
T
K
L
N
Q
H
A
P
L
A
M
V
G
DGIND
A
P
A
M
K
A
AA
I
G
I
A
M
GSGT
D
V
A
L
E
T
ADAALTHNH
L
R
G
L
V
Q
M
I
E
L
A
R
A
T
H
A
N
I
R
Q
N
I
T
I
A
L
G
L
K
G
I
F
L
V
T
T
L
L
GMTG
L
W
L
A
V
L
A
D
T
G
A
T
V
L
V
T
A
N
A
L
RLLR
19
Fugue
56.82
17%
-64
- C4 -
2FMC
-
RODL_NEUCR
A:
[1-82]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
T
----------------------------------------------
I
G
P
N
---
T
--
C
S
I
D
D
Y
K
P
Y
C
C
Q
----
S
M
S
G
P
-
A
G
-
S
-------
P
G
-------
L
L
N
-------
L
I
PVD
L
S
A
S
L
G
C
V
-----
V
G
V
I
G
S
-
Q
C
G
A
S
V
K
C
----
C
K
D
D
V
T
N
--------
T
G
N
---------
S
F
L
I
I
N
A
A
N
C
V
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
51.36
26%
-8
- C5 -
1W2I
2
ACYP_PYRHO
A:
[18-59]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
R
W
S
M
Q
R
----
E
A
R
K
L
-
G
V
-
N
-------
G
W
V
R
N
L
PDG
S
V
E
-------
A
V
---
L
E
G
D
E
-
E
R
-----
V
E
A
L
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
48.18
41%
-102
- C5 -
2VF2
-
HSAD_MYCTU
A:
[107-130]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
F
N
R
Y
A
A
M
A
L
K
G
L
------------
F
D
Q
L
G
L
G
-------
R
V
P
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
48.15
41%
-102
- C5 -
2WUD
1
HSAD_MYCTU
A:
[87-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
F
N
R
Y
A
A
M
A
L
K
G
L
------------
F
D
Q
L
G
L
G
-------
R
V
P
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
48.09
41%
-101
- C5 -
2WUE
2
HSAD_MYCTU
A:
[87-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
F
N
R
Y
A
A
M
A
L
K
G
L
------------
F
D
Q
L
G
L
G
-------
R
V
P
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
47.55
41%
-99
- C5 -
2WUF
1
HSAD_MYCTU
A:
[87-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
F
N
R
Y
A
A
M
A
L
K
G
L
------------
F
D
Q
L
G
L
G
-------
R
V
P
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
47.22
41%
-92
- C5 -
2WUG
1
HSAD_MYCTU
A:
[87-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
F
N
R
Y
A
A
M
A
L
K
G
L
------------
F
D
Q
L
G
L
G
-------
R
V
P
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
45.71
10%
-49
- C5 -
3G2B
1
PQQD_XANCP
A:
[28-89]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Q
W
V
L
L
A
P
E
--
R
----
V
V
E
L
D
-
D
I
-
A
-------
L
V
-------
V
A
Q
-------
R
Y
---
D
G
T
Q
S
L
A
Q
-----
I
A
Q
T
L
A
A
E
F
D
A
D
A
S
E
----
I
E
T
D
V
I
E
L
T
T
T
L
H
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
44.10
14%
-43
- C5 -
1ULR
-
ACYP_THET8
A:
[16-57]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
R
A
F
A
Q
K
----
K
A
L
E
L
-
G
L
-
S
G
Y
A
E
N
L
P
D
G
-------
R
V
E
-------
V
V
---
A
E
G
P
K
-
E
A
-----
L
E
L
F
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
36.45
21%
13
- C5 -
2P1I
1
?
A:
[220-262]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
-------
L
I
S
R
D
---
E
--
G
L
H
T
D
F
N
C
L
I
Y
S
----
L
L
E
N
K
-
L
P
-
E
-------
N
V
-------
V
Q
N
-------
I
V
---
K
E
A
V
E
V
E
R
-----
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
33.82
21%
1
- C5 -
3OLJ
-
RIR2_HUMAN
A:
[196-237]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
-------
L
I
S
R
D
---
E
--
G
L
H
C
D
F
A
C
L
M
F
K
----
H
L
V
H
K
-
P
S
-
E
-------
E
R
-------
V
R
E
-------
I
I
---
I
N
A
V
R
I
E
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
29.11
19%
7
- C5 -
2EO2
-
A:
[25-45]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
R
E
F
S
E
I
Q
L
S
----
R
L
K
K
L
-
G
I
-
H
-------
K
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
22.03
12%
40
- C5 -
1BAL
-
A:
[3-28]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
E
---
E
--
Q
N
N
D
A
L
S
P
A
I
R
R
----
L
L
A
E
H
-
N
L
-
D
-------
A
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
20.07
27%
23
* C5 *
2OJM
-
A:
[1-22]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
------------
F
H
H
I
F
R
G
-------
I
V
H
V
G
---
K
--
T
I
H
R
L
V
T
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------