@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1791: (2016-03-29 )
MTGWISIDRSIQNHWLFKEKRTFSKFEAWIYLLMEANHSKAKVPIGNQIVTVERGQRLTSILTLSDLFNWSRFKVKTFLDLLESDGMLEVKTTSKYTLITIVNYDFYQSEQGRNQHQNDIKPTSKQHQSNINPTSKQHQTNTNNNDNKDNNEKNVNNEKKKTTAFDFFQDNGFGFITSYNLDDLNYYLDSFENDSDEIVTASLKIAKDRNKVTWGYAKSILNTWLNANLKSIEQVRAFEKQQLESKKQNYKPFVKQSKEKTPKWLTDSTRETKTPEVDENLEKDREAFIKRLNSKWE
Atome Classification :
(20 SA)
-----------------------------------------------------------------.........10.......----------.20.---.......30........40......-----..50----....------------....-----.60-------..-----.......70...------------------------.....80........90......-----------------------------..100-----........110----------.------........120------------------.....---..130.......-----140---.....-----..150.-------......160.......170------...-.-....180-......--...190------.....-...200..-----------------------------.....210.......220....------------...230------........240--...-------.....250.......260---.........---270..-----------.....-280.......290.-....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------M
T
G
W
I
S
ID
R
S
I
Q
N
HW
L
F
K
----------
E
KR
T
---
F
S
K
F
E
A
W
I
Y
L
L
M
EANHSKAKVPIG
N
-----
Q
I
V
-----
T
VER------------G
Q
R
L
-----
T
S
--------
I
L
-----
T
L
S
D
LFN
W
S
R
F
K
------------------------
V
K
T
F
L
D
L
L
ESDG
M
L
E
V
K
TTS
K
Y
T
-----------------------------
L
I
T
I
------
V
NYDFYQSE------------Q------GRNQHQNDIKP------------------T
S
K
Q
H---QSNINPTSKQHQ-----TNT---NNNDN-----KDNNEK-------NVNNEKKK
T
T
A
F
D
F
FQDN-------G
F
G
-
F
-
I
T
SYN---
L
D
D
L
N
Y
--
Y
L
D
SF-------ENDSD-
E
I
V
T
A
S
L
K
-----------------------------IAKDRN
K
V
T
W
G
Y
A
K
S
I
L
N
T
W
L
N------------A
N
L
K
S
-------
I
E
Q
V
R
A
F
E
K
Q
---
Q
L
E
-------
S
K
KQN
Y
K
P
F
V
K
QSKEK-----TPKWLTDST---RETKT-----------PE
V
D
E
-
N
L
E
K
D
R
E
A
F
I
K
R
LN-SKWE
31
HHSearch
61.21
20%
-93
- C3 -
2HS5
-
?
A:
[32-87]
--------------------------------------------------------------------------------------------------------
R
V
A
G
I
L
R
D
A
I
I
D
G
---------------------
T
F
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P
------------
G
A
R
L
------
S
--------
E
P
-----
D
I
C
A
A
L
D
V
S
R
N
T
------------------------
V
R
E
A
F
Q
I
L
I
E
D
R
L
V
A
H
E
L
N
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
58.37
21%
-93
- C3 -
3IHU
-
?
A:
[20-75]
--------------------------------------------------------------------------------------------------------
T
V
F
F
G
I
M
S
G
L
E
L
G
---------------------
T
F
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P
------------
G
Q
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------
V
--------
E
T
-----
D
L
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A
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V
G
R
N
S
------------------------
V
R
E
A
L
Q
R
L
A
A
E
G
I
V
D
L
Q
R
H
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
56.99
22%
-67
- C3 -
2ZC2
5
?
A:
[4-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
L
V
E
D
F
E
-
R
-------
E
L
G
R
M
-
L
S
P
F
E
---
L
E
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--
T
V
S
D
D
-------
K
T
-
D
P
-
D
L
V
R
S
A
L
R
-----------------------------
E
A
V
F
N
G
K
T
N
W
N
Y
I
Q
A
I
L
R
N
W
R
H
------------
E
G
I
S
T
-------
L
R
Q
V
E
--------------------------------------------------------------------------------------------
49
Fugue
55.60
18%
39
- C2 -
4UPC
-
NICA_HUMAN
A:
[42-655]
IPLNKTAPCVCQSSIS
G
D
T
G
V
IHVVEK
E
E
D
L
Q
W
V
L
TDGPNPPYMVLLESKHFTRDLMEKLKGRTS
R
I
A
A
V
S
L
T
K
P
S
P
A
S
G
F
S
P
----------
N
G
L
A
---
Y
E
D
F
S
F
P
I
F
L
L
E
D
E
N
E
T
K
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L
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N
G
SC
A
M
Q
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F
S
H
MT
A
T
C
M
R
------------
R
S
S
I
-----
Q
S
--------
T
F
S
IV
C
D
P
L
S
D
Y
N
V
W
S
M
L
N
VVVAATRLDSRSFFWNVAPGAESA
V
A
S
F
V
T
Q
L
A
A
A
E
A
L
Q
-
K
A
P
D
V
T
T
-----------------------------
L
P
R
N
------
V
M
F
V
F
F
Q
G
E
------------
T
FDYIG
S
S
R
M
V
Y
D
M
E
K
G
P
------------------
V
S
Q
K
N
---
E
S
V
R
L
E
K
S
G
A
G
V
P
A
VIL
R
R
P
---
N
Q
S
Q
P
-----
L
P
P
R
A
R
-------
N
I
S
G
V
V
L
A
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H
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G
A
F
H
N
K
Y
-------
Y
Q
S
-
I
-
Y
D
T
A
E
---
N
I
N
V
S
Y
PE
W
L
S
P
--------
E
E
D
L
N
-
F
V
T
D
T
A
K
A
-----------------------------
L
A
D
V
A
T
V
L
----
G
R
A
L
Y
E
D
T
V
Q
------------
A
D
P
Q
T
-------
V
T
L
L
Y
G
F
L
I
K
---
P
L
Q
HYIAVVQ
Y
A
L
A
N
L
T
G
T
V
V
N
L
C
V
R
-----
S
T
A
R
L
A
R
A
W
---
S
S
T
E
Y
-----------
S
T
W
T
E
-
S
R
W
K
D
I
R
A
R
I
F
L
-------
48
Fugue
54.29
18%
12
- C2 -
4WW4
1
?
A:
[3-458]
--------------------------------------------------------------QIS
E
V
R
G
N
T
R
D
H
R
T
A
A
H
T
H
I
K
GLGLNSSGIA
E
K
Q
A
AGF
V
G
Q
C
A
A
R
E
A
C
G
V
V
V
D
L
I
K
A
H
K
M
A
G
R
-----
G
V
L
-----
L
A
G
G
P
GTG
K
T
A
L
A
L
A
I
S
Q
E
L
GTK
I
P
F
C
--------
P
I
-----
T
G
S
E
I
Y
S
T
E
V
K
K
------------------------
T
E
V
L
M
E
N
F
R
R
A
I
G
L
R
V
R
E
T
K
D
V
Y
E
G
E
VSTLL
I
G
L
K
S
ARGQKLDQKERVQVG
D
V
I
Y
I
E
TNTGA
C
R
S
D
A
Y
A
T
E
FDLEAEEYVPIP
K
------
G
E
V
H
K
K
K
E
I
V
Q
------------------
D
V
T
L
H
D
L
D
V
A
N
A
R
P
D
I
I
S
M
M
-----
G
Q
L
MKP
K
M
T
E
I
-----
T
D
K
L
R
M
-------
E
I
N
K
V
V
Q
K
Y
I
N
Q
G
V
A
E
L
I
P
------
G
V
L
-
F
-
I
D
E
A
H
MLD
I
E
C
F
T
Y
--
L
N
K
A
L
-------
E
S
P
I
A
P
I
V
V
L
A
S
N
R
G----------------------------
I
A
T
I
R
G
A
D
D
L
K
A
A
H
G
I
P
P
D
F
L
Q
R
LL
I
I
P
T
H
P
Y
E
P
D
E
I
R
R
-------
I
V
R
I
R
A
Q
T
E
G
V
Q
L
T
D
A
-------
A
V
D
R
V
A
E
H
G
V
R
I
S
L
R
Y
-----
C
L
Q
L
L
A
P
A
S
---
I
L
A
R
V
N
GRTQVD
V
Q
D
I
A
E
A
E
E
L
F
L
D
A
R
R
S
A
N
I
L
T
S
T
-
G
G
L
H
27
HHSearch
51.31
26%
-63
- C3 -
1HW1
1
FADR_ECOLI
A:
[25-67]
-------------------------------------------------------------------------------------------------------------------------------------------
F
P
P
------------
G
T
I
L
-----
P
A
--------
E
R
-----
E
L
S
E
L
I
G
V
T
R
T
T
------------------------
L
R
E
V
L
Q
R
L
A
R
D
G
W
L
T
I
Q
H
G
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
50.40
34%
-45
- C3 -
3C7J
-
?
A:
[45-85]
--------------------------------------------------------------------------------------------------------------------------------------------
P
S
------------
G
T
A
L
------
R
--------
Q
Q
-----
E
L
A
T
L
F
G
V
S
R
M
P
------------------------
V
R
E
A
L
R
Q
L
E
A
Q
S
L
L
R
V
E
T
H
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
50.33
29%
-39
- C3 -
3BWG
1
YYDK_BACSU
A:
[24-71]
--------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
------------
G
D
K
L
-----
P
V
--------
L
E
-----
T
L
M
A
Q
F
E
V
S
K
S
T
------------------------
I
T
K
S
L
E
L
L
E
Q
K
G
A
I
F
Q
V
R
G
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
49.80
11%
18
- C2 -
1E2X
2
FADR_ECOLI
A:
[10-231]
----------------------------------------------------------------------------------------------
Q
S
P
---
A
G
F
A
E
E
Y
I
I
E
S
I
W
N
N
-----------------------
R
F
P
P
------------
G
T
I
L
-----
P
A
--------
E
R
-----
E
L
S
E
L
I
G
V
T
R
T
T
------------------------
L
R
E
V
L
Q
R
L
A
R
D
G
W
L
T
I
Q
H
G
K
P
T
K
-----------------------------
V
------------------------------------------------------------------
N
N
F
W
E
---
T
S
G
L
N
I
L
E
T
L
A
R
-----
L
D
H
---
E
S
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P
Q
-----
L
I
D
N
L
L
-------
S
V
R
T
N
I
S
T
I
F
I
R
T
A
F
R
Q
H
---------------
P
D
K
---
A
Q
E
V
L
A
--
T
A
N
E
V
-------
A
D
H
A
D
-
A
F
A
E
L
D
Y
N
-----------------------------
I
F
R
G
L
A
F
A
S
G
N
P
I
Y
G
L
I
L
N
G
M
K
------------
G
L
Y
T
R
-------
I
G
R
H
Y
F
A
N
P
E
---
A
R
S
-------
L
A
L
G
F
Y
H
K
L
S
A
L
C
S
E
G
-----
A
H
D
Q
V
Y
E
T
V
---
R
R
Y
G
H
-----------
E
S
G
E
I
-
W
H
R
M
Q
--------------
46
Fugue
48.39
21%
-39
- C3 -
2ZC2
5
?
A:
[4-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
L
V
E
D
F
E
R
-------
E
L
G
-
R
M
L
S
P
F
E
---
L
E
D
L
Q
K
--
T
V
S
D
D
--------
K
T
D
P
-
D
L
V
R
S
A
L
R
-----------------------------
E
A
V
F
N
G
K
T
N
W
N
Y
I
Q
A
I
L
R
N
W
R
H
------------
E
G
I
S
T
-------
L
R
Q
V
E
E
-------------------------------------------------------------------------------------------
33
HHSearch
47.37
13%
-61
- C3 -
2V79
5
DNAD_BACSU
A:
[12-86]
------------------------------------------------------------------
Q
G
T
S
T
I
P
N
L
L
L
T
H
Y
K
Q
L
----------
G
-
L
N
---
E
T
E
L
I
L
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K
I
K
M
H
L
E
K
--------------------------------------
G
S
Y
F
-----
P
T
--------
P
N
-----
Q
L
Q
E
G
M
S
I
S
V
E
E
------------------------
C
T
N
R
L
R
M
F
I
Q
K
G
F
L
F
I
E
E
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
46.25
21%
-25
- C3 -
3EDP
1
?
A:
[28-74]
--------------------------------------------------------------------------------------------------------------------------------------------
K
T
------------
G
--
M
-----
P
N
--------
E
T
-----
A
L
Q
E
I
Y
S
S
S
R
T
T
------------------------
I
R
R
A
V
D
L
L
V
E
E
G
L
V
V
R
K
N
G
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
46.23
26%
-32
- C3 -
2ZC2
5
?
A:
[18-76]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
P
F
E
---
L
E
D
L
Q
K
--
T
V
S
D
D
-------
K
T
D
P
D
--
L
V
R
S
A
L
R
-----------------------------
E
A
V
F
N
G
K
T
N
W
N
Y
I
Q
A
I
L
R
N
W
R
H
------------
E
G
I
S
T
-------
L
R
Q
V
---------------------------------------------------------------------------------------------
50
Fugue
45.77
12%
39
- C2 -
2DI3
1
?
A:
[2-232]
---------------------------------------------------------------------------------------------
S
V
K
A
---
H
E
S
V
M
D
W
V
T
E
E
L
R
S
G
-----------------------
R
L
K
I
------------
G
D
H
L
-----
P
S
--------
E
R
-----
A
L
S
E
T
L
G
V
S
R
S
S
------------------------
L
R
E
A
L
R
V
L
E
A
L
G
T
I
S
T
A
------------------------------------------------------------------
T
------
G
S
G
P
R
S
G
T
I
I
T
------------------
A
A
P
G
--------
Q
A
L
S
L
S
V
T
-----
L
Q
L
---
V
T
N
Q
V
-----
G
H
H
D
I
Y
-------
E
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R
Q
L
L
E
G
W
A
A
L
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S
A
E
R
-------
G
D
W
-
D
-
V
A
E
A
L
---
L
E
K
M
D
D
--
P
S
L
P
L
-------
E
D
F
L
R
-
F
D
A
E
F
H
V
V
-----------------------------
I
S
K
--------
G
A
E
N
P
L
I
S
T
L
M
------------
E
A
L
R
L
-------
S
V
A
D
H
T
V
A
R
A
---
R
A
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-------
P
D
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R
A
T
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A
R
L
Q
K
E
H
R
A
-----
I
L
A
A
L
R
A
G
E
---
S
T
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A
A
-----------
T
L
I
K
E
-
H
I
E
G
Y
Y
E
E
T
A
A
A
E
A
-
L
---
21
HHSearch
45.66
26%
-4
- C- -
2I5U
-
?
A:
[2-75]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
S
I
W
E
N
N
-------
G
F
G
-
L
-
M
S
S
K
T
---
M
T
D
F
D
Y
--
W
I
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K
I
GAS
Q
K
E
-
A
E
-
Q
L
I
V
K
A
I
E
-----------------------------
I
A
I
D
A
N
A
R
N
Y
N
Y
I
N
A
I
L
K
D
W
E
Q
------------
R
G
F
K
S
--------------------------------------------------------------------------------------------------------
29
HHSearch
45.54
24%
-26
- C3 -
3SXY
-
?
A:
[27-67]
--------------------------------------------------------------------------------------------------------------------------------------------
K
L
------------
G
E
K
L
------
N
--------
V
R
-----
E
L
S
E
K
L
G
I
S
F
T
P
------------------------
V
R
D
A
L
L
Q
L
A
T
E
G
L
V
K
V
V
P
R
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
45.42
29%
-29
- C3 -
2DI3
-
?
A:
[22-62]
-------------------------------------------------------------------------------------------------------------------------------------------
L
K
I
------------
G
D
H
L
-----
P
S
--------
E
R
-----
A
L
S
E
T
L
G
V
S
R
S
S
------------------------
L
R
E
A
L
R
V
L
E
A
L
G
T
I
S
T
A
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
Fugue
45.24
14%
25
- C2 -
3OFK
1
?
A:
[3-206]
----------------------------------------------------------------------------
D
P
F
T
M
V
S
----------
V
D
N
T
---
Y
Q
S
L
E
R
E
L
----------
A
N
D
D
P
W
R
-----
L
D
D
-----
N
P
F
E
------------
R
E
R
H
-----
T
Q
--------
L
L
-----
R
L
S
L
----
S
S
G
A
------------------------
V
S
N
G
L
E
I
G
C
A
A
G
A
F
T
E
K
L
A
P
H
C
K
-----------------------------
R
L
T
V
------
I
D
V
------------------------------
M
P
R
A
I
G
------------------
R
A
C
Q
R
---------------------------------------
T
K
R
-------
W
S
H
I
S
W
A
A
T
D
I
L
Q
F
S
T
A
E
-------
L
F
D
-
L
-
I
V
V
A
E
---
V
--
L
Y
Y
--
L
E
D
---------
M
T
Q
M
R
-
T
A
I
D
N
M
V
K
-----------------------------
M
L
A
P
G
G
H
L
V
F
G
S
A
R
D
A
T
C
R
R
W
G
------------
H
V
A
--------------------------------------------
G
A
E
T
-----
V
I
T
I
L
T
E
A
L
---
T
E
V
E
R
-----------
V
Q
C
Q
G
-
Q
S
A
D
E
D
C
L
L
A
R
F
R
N
-
P
E
--
14
PsiBlast_PDB
44.35
22%
67
- C4 -
1CZM
2
CAH1_HUMAN
A:
[19-127]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
P
I
A
------------
N
------
G
N
N
Q
S
P
V
D
I
K
T
------------------
S
E
T
K
H
---
D
T
S
L
K
P
I
S
V
S
Y
N
-----
P
A
T
---
A
K
E
I
I
-----
N
V
G
H
S
F
-------
H
V
N
-----------
F
E
D
N
DNR
S
V
L
K
G
G
P
-
F
-
S
D
S
Y
R
---
L
F
Q
F
H
F
--
H
W
G
S
T
-------
N
E
H
G
S
-
E
H
T
V
D
G
V
K
-----------------------------
Y
S
A
E
L
H
V
A
H
W
N
S
A
K
---------------------------------------------------------------------------------------------------------------------------------
54
Fugue
44.23
16%
35
- C1 -
1W8K
1
?
A:
[3-435]
-------------------------------------------------------------------
P
T
V
E
R
S
T
R
M
S
N
P
W
--------------
K
A
F
---
M
E
K
Y
D
-----
I
E
R
T
H
S
S
G
V
R
V
D
L
G
E
-----
D
A
E
-----
V
E
N
A
------------
K
Y
R
I
-----
P
A
G
R
C
P
V
F
G
K
G
I
-----
V
I
E
N
-------
S
------------------------
D
V
S
F
L
R
P
V
A
T
G
G
F
A
F
P
N
A
N
D
H
I
S
-----------------------------
P
M
T
L
------
A
N
L
K
E
R
Y
K
D
------------
N
------
V
E
M
M
K
L
N
D
I
A
L
C
R
T
H
A
A
S
FVSN
Y
R
H
P
A
V
Y
D
E
K
E
K
---
T
C
H
M
L
Y
L
S
A
Q
E
N
-----
M
Y
C
---
S
D
A
V
F
C
F
K
P
D
K
D
E
S
F
E
N
L
V
Y
L
S
K
N
V
R
N
D
W
D
K
K
C
P
R
K
N
L
G
N
A
-------
K
F
G
-
L
-
W
V
D
G
N
---
C
E
E
I
P
Y
--
V
K
E
V
E
-------
A
E
D
L
R
-
E
C
N
R
I
V
F
G
A
SASDQPTFKSKGRGFN
W
A
N
F
DSVKK
K
C
Y
I
F
N
T
K
P
T
C
L
I
N
D
K
N
F
I
A
T
T
A
L
S
------------
H
P
Q
E
V
DLEFPCS
I
Y
K
D
E
I
E
R
E
I
---
K
K
Q
-------
E
R
I
V
L
P
R
I
F
I
S
N
D
K
E
S
IKCP
C
E
P
E
R
I
S
Q
S
T
CNF
Y
V
C
N
C
-----------
V
E
K
R
A
-
E
I
K
E
N
N
Q
V
V
I
K
E
E
F
R
D
Y
Y
E