@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1827: (2016-03-29 )
MDKEQLKKYIYEYVKEYKEIPIYQLEDLFKEINHDYIGRTSITHDKDENIVFWSGWNKITMFALIELVKSEQLDLVYRGSFIMRYLLDGRVPNLPLAICYPEDGQQTDVPSWVPMVLRINKEEKIK
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.......----.20....----....30.....-----------...40........50--------.......--..60........-------70-........80........90--------------........---100..--...-------------..110----..--.....120....-------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
D
K
E
Q
L
K
K
Y
I
Y
E
Y
V
K
E
Y
K
----EI
P
I
Y
Q
L
----
E
D
L
F
K
E
I
N
H
D
Y-----------IGRTSITHDKDE
N
I
---------
V
F
WSGW
N
--
K
I
T
M
F
A
L
I
E
L
V
K
-------SE-Q
L
D
L
V
Y
R
G
S
F
I
M
R
Y
L
LDGRV--------------PNL
P
L
A
I
C
---YPEDG--QQT-------------DVP
S
W
----
V
P
--
M
V
L
R
INKEEKIK-------------
43
Fugue
68.24
19%
-81
- C2 -
4DOX
-
CAPSD_PMV
A:
[11-174]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IAFPAIT
Q
E
Q
M
S
S
I
K
V
D
PTSNLL
P
S
Q
E
Q
L
K
S
V
S
T
L
M
V
A
A
------
K
V
P
A
A
S
V
----
T
T
V
A
L
E
L
V
N
F
C
-----------
Y
D
N
G
S
---
S
A
Y
T
T
V
---------
T
G
P
S
S
I
P
--
E
I
S
L
A
Q
L
A
S
I
V
K
-------
A
S
-
G
T
S
L
R
K
F
C
R
Y
F
A
P
I
I
W
N
L
R
T
DKMAPANWEASGYK
P
S
A
K
F
A
A
F
---
D
F
F
D
G
--
V
E
N
-------------
P
A
A
M
Q
----
P
P
SG
L
T
R
S
P
T
Q
E
E
R
I
A
N
A
T
N---------
21
HHSearch
61.11
19%
-164
* C3 *
2DK8
-
RPC6_MOUSE
A:
[10-73]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
P
V
E
I
E
N
R
I
I
E
L
C
H
Q
F
P
H---
G
I
T
D
Q
V
I
----
Q
N
E
M
P
H
I
--
E
-----------------------------------------
A
--
Q
Q
R
A
V
A
I
N
R
L
L
S
-------
M
G
-
Q
L
D
L
L
R
S
-
N
T
G
L
L
Y
R
I
------------------------------------------------------------------------------------------
23
HHSearch
59.16
22%
-123
- C3 -
1UCR
2
DSVD_DESVH
A:
[1-62]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
E
A
K
Q
K
V
V
D
F
L
N
S
K
S
G
S
K
S
K
F
Y
F
N
D
F
----
T
D
L
F
P
D
M
--------------------------
K
-----------------
Q
--
R
E
V
K
K
I
L
T
A
L
V
N
-------
D
E
-
V
L
E
Y
W
S
S
G
S
T
T
M
----------------------------------------------------------------------------------------------
46
Fugue
55.55
16%
-50
- C1 -
3GRE
-
VPS15_YEAST
A:
[1031-1454]
ESIEKFLSTFILPPLRDYKEFGPIQEIVRSPNMGNLRGKLIATLMENEPNSIT
S
S
A
V
S
P
G
E
T
P
Y
L
I
T
G
S
DQG
V
I
K
I
W
N
L
K
E
I
I
VGEVYSSS
L
T
Y
D
CSSTVT
Q
I
T
M
IPNFD
A
F
A
V
S
S
KDG
Q
I
I
V
L
K
V
N
H
Y
Q
Q
ES
E
V
K
F
L
NCECI
R
K
I
N
LKNFGKNEYAV
R
M
R
A
F
V
N
EE
K
S
L
L
V
A
L
T
NLS
R
V
I
I
F
D
IRTLERL
Q
I
I
E
N
S
PRHGAVS
S
I
C
I
D
EECC
V
L
I
L
G
T
TRG
I
I
D
I
W
DIRFNVLI
R
S
W
S
F
G
DHAPIT
H
V
E
V
C
QFYGKN
S
V
I
V
V
G
GSSKTF
L
T
I
W
NFVKGHCQYAFIN
S
D
E
Q
P
S
M
E
H
F
L
P
I
E
K
G
L
E
----
E
L
N
F
C
G
I
----
R
S
L
N
A
L
-------------------
S
T
I
S
V
S
N
D
K
I
L
---------
L
T
D
E
A
T
S
--
S
I
V
M
F
S
L
N
E
L
S
S
-------
S
K
-
A
V
I
S
P
F
S
D
V
F
I
P
T
Q
V
T
------------------
A
N
L
T
M
L
L
R
---
K
M
K
H
D
--
I
I
N
-------------
S
I
S
T
C
E
V
DE
T
P
--
L
L
V
A
C
D
N
S
G
L
I
G
I
F
Q----------
45
Fugue
52.87
14%
-44
* C2 *
1F1M
1
?
A:
[3-164]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PN
L
T
E
I
S
K
K
I
T
E
S
N
A
V
V
L
A
V
K
E
V
----
E
T
L
L
T
S
I
----
D
E
L
A
K
A
I
G
K
K
I
-----------
K
S
D
V
S
L
D
N
E
A
D
H
N
G
---------
S
L
M
S
G
A
Y
--
L
I
S
T
L
I
T
K
K
I
S
A
IKDSGEL
K
A
-
E
I
E
K
A
K
K
C
S
E
E
F
T
A
K
L
K
G
E
H
--------------
T
D
L
G
K
E
G
V
---
T
D
D
N
A
--
K
K
A
ILKTNNDKTKG
A
D
E
L
E
K
L
----
F
E
--
S
V
K
N
L
S
K
A
A
K
E
M
L
T
N
S
V
K
ELTSP--
42
Fugue
51.32
9%
-60
- C2 -
3HVW
-
?
A:
[175-333]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
N
R
L
R
L
Q
E
D
V
S
L
R
L
Q
R
D
G
----
A
L
T
V
I
A
A
D
LLP
L
A
L
L
N
T
I
I
R
T
L
G
Y
P
F
S
N
D
L
M
L
E
A
R
D
R
I
R
A
E
L
P
D
F
T
L
---------
Y
K
I
S
P
T
R
--
F
G
L
L
L
P
R
Q
Q
Q
E
E
-------
T
E
-
S
V
C
L
R
L
L
R
A
F
E
S
P
V
V
C
R
G
I
P
--------------
I
K
A
N
V
G
L
G
V
L
P
L
A
D
D
T
LD
G
D
Q
-------------
D
W
L
R
L
----
V
V
--
S
A
A
D
D
A
R
D
R
G
V
G
W
A
R
YNPPLDQAQQ
40
HHSearch
50.70
13%
-109
- C3 -
2HTJ
-
KS71A_ECOLX
A:
[1-47]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
N
E
I
L
E
F
L
N
R
H
N
----
G
G
K
T
A
E
I
----
A
E
A
L
A
---
V
T
-----------------------------------------
D
--
Y
Q
A
R
Y
Y
L
L
L
L
E
K
-------
A
G
-
M
V
Q
R
S
-----------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
48.94
32%
-70
- C4 -
3TS6
1
?
A:
[94-136]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
N
D
Y
-----------
T
G
E
I
K
I
M
A
K
A
V
N
N
I
---------
V
T
V
S
Q
G
N
--
R
I
A
Q
L
I
L
L
P
L
I
E
-------
T
D
N
K
V
--------------------------------------------------------------------------------------------------------
50
Fugue
48.70
18%
-20
- C2 -
2LQO
-
Y3198_MYCTU
A:
[1-88]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
T
A
A
L
T
I
Y
T
T
S
W
C
G
---------
Y
C
L
R
L
----
K
T
A
L
T
A
N
R
I
A
Y
--------------
D
E
V
D
I
E
H
N
------------------------------
R
A
A
-------
A
E
-
F
V
G
S
V
N
G
G
--------
N
R
T
V
--------------
P
T
V
K
F
A
--------
D
G
--
S
T
L
-------------
T
N
P
S
A
----
D
E
--
V
K
A
K
L
V
K
I
A
G
L
E
HH-----------
19
PsiBlast_PDB
48.52
25%
110
- C- -
1XI5
-
AUXI_BOVIN
J:
[806-872]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
M
A
K
E
M
D
P
E
K
-----------
L
K
I
L
E
W
I
E
G
K
E
R
N
I
RALLSTMHT
V
L
W
A
G
E
T
--
K
W
K
P
V
G
M
A
D
L
V
T
-------
P
E
-
Q
V
K
K
V
Y
R
K
A
V
L
V
----------------------------------------------------------------------------------------------
13
PsiBlast_PDB
48.50
32%
-63
- C4 -
3TP1
1
VPRT_MPMV
A:
[94-137]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
N
D
Y
-----------
T
G
E
I
K
I
M
A
K
A
V
N
N
I
---------
V
T
V
S
Q
G
N
--
R
I
A
Q
L
I
L
L
P
L
I
E
-------
T
D
N
K
V
Q
-------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
48.09
32%
-74
- C4 -
3TRL
1
?
A:
[94-136]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
N
D
Y
-----------
T
G
E
I
K
I
M
A
K
A
V
N
N
I
---------
V
T
V
S
Q
G
N
--
R
I
A
Q
L
I
L
L
P
L
I
E
-------
T
D
N
K
V
--------------------------------------------------------------------------------------------------------
25
HHSearch
48.06
13%
-167
- C3 -
2L01
-
?
A:
[13-67]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
I
W
E
A
L
N
G
T
E
----
G
L
T
Q
K
Q
I
----
K
K
A
T
---------------------------------------------
K
L
K
AD
K
D
F
F
L
G
L
G
W
L
L
R
-------
E
D
-
K
V
V
T
S
E
V
E
G
E
I
F
V
K
--------------------------------------------------------------------------------------------
15
PsiBlast_PDB
48.03
32%
-78
* C4 *
3TRN
1
?
A:
[94-137]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
N
D
Y
-----------
T
G
E
I
K
I
M
A
K
A
V
N
N
I
---------
V
T
V
S
Q
G
N
--
R
I
A
Q
L
I
L
L
P
L
I
E
-------
T
D
N
K
V
Q
-------------------------------------------------------------------------------------------------------
47
Fugue
47.88
15%
-51
- C2 -
1G8E
-
FLHD_ECOLI
A:
[1-98]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
H
T
S
E
L
L
K
H
I
Y
D
I
N
L
S
Y
L
----
L
L
A
Q
R
L
I
----
V
Q
-----------------------------
D
K
A
S
A
---------
M
F
R
L
G
I
N
--
E
E
M
A
T
T
L
A
A
L
T
L
-------
P
Q
-
M
V
K
L
A
E
T
N
Q
L
V
C
H
F
----
R
F
--------------
D
S
H
Q
T
I
T
Q
---
L
T
Q
D
S
--
R
V
D
-------------
D
L
Q
Q
I
----
H
T
--
G
I
M
L
S
T
-------------------
5
PsiBlast_PDB
47.60
32%
-67
- C4 -
3TQ3
1
?
A:
[94-137]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
N
D
Y
-----------
T
G
E
I
K
I
M
A
K
A
V
N
N
I
---------
V
T
V
S
Q
G
N
--
R
I
A
Q
L
I
L
L
P
L
I
E
-------
T
D
N
K
V
Q
-------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
47.51
29%
-64
- C3 -
1BBW
-
SYK1_ECOLI
A:
[279-350]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
M
A
Y
A
D
Y
K
----
D
L
-
I
E
L
T
----
E
S
L
F
R
T
L
A
Q
D
I
-----------
L
G
K
T
E
V
T
Y
G
-
D
V
T
L
---------
D
F
G
K
P
F
E
--
K
L
T
M
R
E
A
I
K
K
Y
R
-------
P
E
-----------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
47.51
32%
-64
- C4 -
3TTA
1
?
A:
[94-136]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
N
D
Y
-----------
T
G
E
I
K
I
M
A
K
A
V
N
N
I
---------
V
T
V
S
Q
G
N
--
R
I
A
Q
L
I
L
L
P
L
I
E
-------
T
D
N
K
V
--------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
47.39
32%
-69
- C4 -
2D4L
-
A:
[176-219]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
N
D
Y
-----------
T
G
E
I
K
I
M
A
K
A
V
N
N
I
---------
V
T
V
S
Q
G
N
--
R
I
A
Q
L
I
L
L
P
L
I
E
-------
T
D
N
K
V
Q
-------------------------------------------------------------------------------------------------------
29
HHSearch
47.37
14%
-129
- C3 -
1WI9
-
A:
[103-153]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
F
L
T
E
F
I
N
Y
I
K
K
S
K
----
V
V
L
L
E
D
L
----
A
F
Q
M
G
L
R
------------------------
T
----------------------
Q
D
A
I
N
R
I
Q
D
L
L
T
-------
E
G
-
T
L
T
G
V
I
D
---------------------------------------------------------------------------------------------------