@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1931: (2016-03-30 )
MAKELCFEGITLKAFDEQYRSAINDFDLNERQQIYSSLPKEVIDDAINDVDRIANVAINDKNEVVGFFVLHRYYQHEGYDTPENVVYIRSLSINEKYQGFGYGTKIMMSLPQYVQGVFPDFNHLYLVVDAENDNAWNLYERAGFMHTATKEEGPIGKERLYYLDLDSKHVSSLKLEEESRSEVTNVHIINLMIDGQKVGFIALEQIGERMNIAAIEVDKSYRFNGIGSSALRQLPTYLRKNYDNLNVITMILFGENNDFKPLCLNSNFVEIEQTDDYVVFEKYLNY
Atome Classification :
(20 SA)
.........10........20........30....------...------.----.-----40---..----....----.-----.---.-50.........60........70.--.......80........-90........100...----....110.......120-----.........130.......140.......150.-...----------...160---......------------..170.--......--180--.......----.------.190.--......200.......210.......220........230.......240.......250..-.....260.......270.......280....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
A
K
E
L
C
FEGI
T
L
K
A
F
D
E
Q
Y
R
S
AINDFD
L
N
E
-
R
Q
Q
I
------
Y
S
S------L----
P
-----
K
----
E
V
----
I
D
D
A
----
I
-----
N
---
D
-
V
-
D
R
I
A
N
V
A
INDKN
E
V
V
G
F
F
V
L
H
R
--
Y
Y
Q
HEGYDTPE
N
V
V
Y
I
R
-SLSINEKYQGFGY
G
T
K
----
I
M
M
S
L
P
Q
Y
V
Q
G
VFPD-------F
N
H
L
Y
L
V
V
DAENDNA
W
N
L
Y
E
RAGFMHTATKEEG-PIG----------K
E
R
L
Y
----
Y
L
DLDS------------K
H
V
S
S
L
--KLEEES--R----SEV
T
N
V
H
----
I
------
I
N
L
M
I--DGQ
K
V
G
F
I
A
L
E
Q
IGERM
N
I
A
A
I
E
VDKSY-RFNGI
G
S
S
A
L
R
Q
L
P
T
Y
L
R
KNYDN
L
N
V
I
T
M
I
L
F
G-ENNDFK
P
L
C
LNS
N
F
V
E
I
EQTD
D
Y
V
V
F
E
K
Y
LNY
13
PsiBlast_PDB
76.86
26%
-113
- C1 -
1M1D
1
?
A:
[31-147]
------------------------------------------
P
K
------
M
----
P
-----
K
----
E
Y
----
I
V
K
L
----
V
-----
F
---
D
-
R
-
H
H
E
S
M
V
I
L
K
N
K
Q
K
V
I
G
G
I
C
F
R
Q
--
Y
-------
K
P
Q
R
F
A
E
V
A
-
F
L
A
V
T
A
N
E
Q
V
R
G
Y
G
T
R
----
L
M
N
K
F
K
D
H
M
Q
K
Q
-----------
N
I
E
Y
L
L
T
Y
A
D
N
-
F
A
I
G
Y
F
K
K
Q
G
F
----
T
K
E
H
R
M
P
Q
E
----------
K
W
K
G
Y
----
I
K
D
Y
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------------
51
HHSearch
74.55
22%
-118
- C1 -
1ON0
2
YYCN_BACSU
A:
[2-151]
--------
T
I
M
L
T
P
M
Q
T
E
E
F
R
S
Y
L
T
Y
T
T
K
H
-
Y
A
E
E
K
V
K
A
GT
W
L
P
------
E
----
D
A
Q
L
L
S
K
----
Q
V
----
F
T
D
L
L
P
RG
L
-----
E
---
T
-
P
-
H
H
H
L
W
S
L
K
L
N
E
K
D
I
V
G
W
L
W
I
H
A
--
E
P
E
H
-----
P
Q
Q
E
A
F
I
Y
-
D
F
G
L
Y
E
P
Y
R
G
K
G
Y
A
K
Q
----
A
L
A
A
L
D
Q
A
A
R
S
M
--
G
-------
I
R
K
L
S
L
H
V
F
A
H
N
Q
T
A
R
K
L
Y
E
Q
T
G
F
Q
E
T
D
V
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
73.15
26%
-116
- C1 -
1PU9
2
?
A:
[31-147]
------------------------------------------
P
K
------
M
----
P
-----
K
----
E
Y
----
I
V
K
L
----
V
-----
F
---
D
-
R
-
H
H
E
S
M
V
I
L
K
N
K
Q
K
V
I
G
G
I
C
F
R
Q
--
Y
-------
K
P
Q
R
F
A
E
V
A
-
F
L
A
V
T
A
N
E
Q
V
R
G
Y
G
T
R
----
L
M
N
K
F
K
D
H
M
Q
K
Q
-----------
N
I
E
Y
L
L
T
Y
A
D
N
-
F
A
I
G
Y
F
K
K
Q
G
F
----
T
K
E
H
R
M
P
Q
E
----------
K
W
K
G
Y
----
I
K
D
Y
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
72.79
17%
-118
- C1 -
3FBU
1
?
A:
[2-148]
---
F
I
K
A
E
R
L
L
I
R
K
F
E
F
K
D
W
E
A
V
H
E
Y
T
S
D
S
-
D
V
M
K
------
Y
I
P
------
E
GVF-
T
-----
E
E
D
T
R
N
F
----
V
N
K
N
----
M
-----
G
------A
K
N
F
P
V
I
L
I
G
-
E
N
I
L
V
G
H
I
V
F
H
K
--
Y
F
G
-------
E
H
T
Y
E
I
--
G
W
V
F
N
P
K
Y
F
N
K
G
Y
A
S
E
----
A
A
Q
A
T
L
K
Y
G
F
K
E
-
M
K
-------
L
H
R
I
I
A
T
C
Q
P
E
N
T
P
S
Y
R
V
M
E
K
I
G
M
R
R
E
G
Y
F
K
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
71.86
19%
-109
- C1 -
3TTH
1
?
A:
[5-149]
-------
K
K
I
R
L
S
A
L
E
R
E
D
L
K
F
V
H
E
L
N
N
N
---
I
M
S
------
Y
W
F
------
E
E
P
Y
E
S
-----
Y
R
E
L
E
D
L
----
H
I
K
H
----
I
-----
H
---
D
-
Q
-
S
E
R
R
F
I
I
K
D
L
K
D
N
K
V
G
L
V
E
L
T
E
--
I
D
F
I
------
H
R
R
C
E
F
--
A
I
I
I
S
P
G
E
E
G
K
G
Y
A
T
E
----
A
T
D
L
T
V
E
Y
A
F
S
I
-
L
N
-------
L
H
K
I
Y
L
L
V
D
E
D
N
P
A
A
L
H
I
Y
R
K
S
G
F
A
E
E
G
K
L
V
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
71.48
26%
-114
- C1 -
1Q2D
2
?
A:
[30-146]
------------------------------------------
P
K
------
M
----
P
-----
K
----
E
Y
----
I
V
K
L
----
V
-----
F
---
D
-
R
-
H
H
E
S
M
V
I
L
K
N
K
Q
K
V
I
G
G
I
C
F
R
Q
--
Y
-------
K
P
Q
R
F
A
E
V
A
-
F
L
A
V
T
A
N
E
Q
V
R
G
Y
G
T
R
----
L
M
N
K
F
K
D
H
M
Q
K
Q
-----------
N
I
E
Y
L
L
T
Y
A
D
N
-
F
A
I
G
Y
F
K
K
Q
G
F
----
T
K
E
H
R
M
P
Q
E
----------
K
W
K
G
Y
----
I
K
D
Y
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
71.14
26%
-111
- C1 -
1QSR
1
?
A:
[30-146]
------------------------------------------
P
K
------
M
----
P
-----
K
----
E
Y
----
I
V
K
L
----
V
-----
F
---
D
-
R
-
H
H
E
S
M
V
I
L
K
N
K
Q
K
V
I
G
G
I
C
F
R
Q
--
Y
-------
K
P
Q
R
F
A
E
V
A
-
F
L
A
V
T
A
N
E
Q
V
R
G
Y
G
T
R
----
L
M
N
K
F
K
D
H
M
Q
K
Q
-----------
N
I
E
Y
L
L
T
Y
A
D
N
-
F
A
I
G
Y
F
K
K
Q
G
F
----
T
K
E
H
R
M
P
Q
E
----------
K
W
K
G
Y
----
I
K
D
Y
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
71.13
26%
-108
- C1 -
1PUA
2
?
A:
[31-147]
------------------------------------------
P
K
------
M
----
P
-----
K
----
E
Y
----
I
V
K
L
----
V
-----
F
---
D
-
R
-
H
H
E
S
M
V
I
L
K
N
K
Q
K
V
I
G
G
I
C
F
R
Q
--
Y
-------
K
P
Q
R
F
A
E
V
A
-
F
L
A
V
T
A
N
E
Q
V
R
G
Y
G
T
R
----
L
M
N
K
F
K
D
H
M
Q
K
Q
-----------
N
I
E
Y
L
L
T
Y
A
D
N
-
F
A
I
G
Y
F
K
K
Q
G
F
----
T
K
E
H
R
M
P
Q
E
----------
K
W
K
G
Y
----
I
K
D
Y
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
70.94
26%
-109
- C1 -
1QSN
2
?
A:
[30-146]
------------------------------------------
P
K
------
M
----
P
-----
K
----
E
Y
----
I
V
K
L
----
V
-----
F
---
D
-
R
-
H
H
E
S
M
V
I
L
K
N
K
Q
K
V
I
G
G
I
C
F
R
Q
--
Y
-------
K
P
Q
R
F
A
E
V
A
-
F
L
A
V
T
A
N
E
Q
V
R
G
Y
G
T
R
----
L
M
N
K
F
K
D
H
M
Q
K
Q
-----------
N
I
E
Y
L
L
T
Y
A
D
N
-
F
A
I
G
Y
F
K
K
Q
G
F
----
T
K
E
H
R
M
P
Q
E
----------
K
W
K
G
Y
----
I
K
D
Y
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------------
46
HHSearch
70.44
19%
-106
- C1 -
3OWC
5
ATSE2_PSEAE
A:
[13-159]
--------
E
L
Q
L
V
P
F
Q
L
G
H
F
P
I
L
Q
R
W
F
A
T
E
K
E
L
V
Q
------
W
A
G
PALRHP
L
----
S
-----
L
----
E
Q
M
H
E
D
L
A
E
S
----
R
-----
R
---
R
P
P
-
L
R
L
L
W
S
A
C
R
-
D
D
Q
V
I
G
H
C
Q
L
L
F
--
D
R
R
-------
N
G
V
V
R
L
A
-
R
I
V
L
A
P
S
A
R
G
Q
G
L
G
L
P
----
M
L
E
A
L
L
A
E
A
F
A
D
-
A
D
-------
I
E
R
V
E
L
N
V
Y
D
W
N
A
A
A
R
H
L
Y
R
R
A
G
F
R
E
E
G
L
R
R
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
70.14
26%
-116
- C1 -
1Q2C
2
?
A:
[30-146]
------------------------------------------
P
K
------
M
----
P
-----
K
----
E
Y
----
I
V
K
L
----
V
-----
F
---
D
-
R
-
H
H
E
S
M
V
I
L
K
N
K
Q
K
V
I
G
G
I
C
F
R
Q
--
Y
-------
K
P
Q
R
F
A
E
V
A
-
F
L
A
V
T
A
N
E
Q
V
R
G
Y
G
T
R
----
L
M
N
K
F
K
D
H
M
Q
K
Q
-----------
N
I
E
Y
L
L
T
Y
A
D
N
-
F
A
I
G
Y
F
K
K
Q
G
F
----
T
K
E
H
R
M
P
Q
E
----------
K
W
K
G
Y
----
I
K
D
Y
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
69.28
12%
-81
- C1 -
3TT2
13
?
A:
[8-313]
----
T
L
P
D
R
F
I
A
R
A
P
V
P
A
D
A
P
A
I
A
R
L
I
A
A
C
-
Q
E
A
D
------
G
D
E
------
P
DA--
S
-----
A
----
E
E
----
V
L
R
D
----
W
-----
E
GLD
L
-
G
-
Q
E
A
V
L
V
V
A
P
-
D
G
E
A
A
A
Y
A
D
V
L
N
--
R
R
----------
Y
V
Q
L
S
V
Y
G
Y
V
H
P
R
F
R
G
M
G
L
G
T
W
----
L
V
Q
W
G
E
E
W
I
Q
D
R
--
M
HLAPAE
A
Q
V
T
V
Q
H
Y
I
R
A
S
S
T
S
A
L
R
L
M
E
Q
H
G
Y
R
P
V
R
D
I
W
V
M
-
A
I
T
L
DQPPPAPEW
P
E
G
I
T
----
A
R
T
F
V
P
GLD
E
R
A
T
Y
E
A
V
E
E
A
F
G
--R
P
P
S
T
F
E
R
W
L
S
M
T
Q
S
E
R
K
D
P
E
L
----
W
------
L
L
A
V
E
TD
S
G
H
I
V
G
T
C
L
G
Q
E
T
A
G
K
G
W
I
G
S
V
G
V
R
R
P
W
-
R
G
R
G
I
A
L
A
L
L
Q
E
V
F
G
V
Y
Y
R
R
--
G
V
R
E
V
E
L
S
V
D
A
E
S
R
T
G
A
P
R
L
Y
R
R
A
G
M
H
V
K
H
R
Y
V
L
H
---------
12
PsiBlast_PDB
69.25
26%
-108
- C1 -
1QST
1
?
A:
[30-146]
------------------------------------------
P
K
------
M
----
P
-----
K
----
E
Y
----
I
V
K
L
----
V
-----
F
---
D
-
R
-
H
H
E
S
M
V
I
L
K
N
K
Q
K
V
I
G
G
I
C
F
R
Q
--
Y
-------
K
P
Q
R
F
A
E
V
A
-
F
L
A
V
T
A
N
E
Q
V
R
G
Y
G
T
R
----
L
M
N
K
F
K
D
H
M
Q
K
Q
-----------
N
I
E
Y
L
L
T
Y
A
D
N
-
F
A
I
G
Y
F
K
K
Q
G
F
----
T
K
E
H
R
M
P
Q
E
----------
K
W
K
G
Y
----
I
K
D
Y
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
69.12
15%
-97
- C1 -
2DXQ
5
?
A:
[4-144]
-------
D
A
I
S
L
R
A
A
G
P
G
D
L
P
G
L
L
E
L
Y
Q
V
L
-
N
P
S
D
------
P
E
L
------
T
TQE-
A
-----
G
----
A
V
----
F
A
A
M
----
L
-----
A
---
Q
-
P
-
G
L
T
I
F
V
A
T
E
-
N
G
K
P
V
A
T
A
T
L
L
I
--
V
P
N
L
T
--
R
A
A
R
P
Y
A
F
I
E
-
N
V
V
T
L
E
A
R
R
G
R
G
Y
G
R
T
----
V
V
R
H
A
I
E
T
A
F
G
A
--
N
-------
C
Y
K
V
M
L
L
T
G
R
H
D
P
A
V
H
A
F
Y
E
S
C
G
F
V
Q
N
K
T
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
67.69
26%
-144
- C1 -
1ON0
2
YYCN_BACSU
A:
[42-148]
--------------------------------------------------
L
----
S
-----
K
----
Q
V
----
F
T
D
L
----
L
P
RGLE
T
---
P
-
H
-
H
H
L
W
S
L
K
L
N
E
K
D
-
I
V
G
W
L
W
I
H
A
--
E
P
E
H
-----
P
Q
Q
E
A
F
I
Y
-
D
F
G
L
Y
E
P
Y
R
G
K
G
Y
A
K
Q
----
A
L
A
A
L
D
Q
A
A
R
S
M
--
G
-------
I
R
K
L
S
L
H
V
F
A
H
N
Q
T
A
R
K
L
Y
E
Q
T
G
F
Q
E
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
66.85
26%
-138
- C1 -
1UFH
-
YYCN_BACSU
A:
[42-148]
--------------------------------------------------
L
----
S
-----
K
----
Q
V
----
F
T
D
L
----
L
PRGLE
T
---
P
-
H
-
H
H
L
W
S
L
K
L
N
E
K
D
-
I
V
G
W
L
W
I
H
A
--
E
P
E
H
-----
P
Q
Q
E
A
F
I
Y
-
D
F
G
L
Y
E
P
Y
R
G
K
G
Y
A
K
Q
----
A
L
A
A
L
D
Q
A
A
R
S
M
--
G
-------
I
R
K
L
S
L
H
V
F
A
H
N
Q
T
A
R
K
L
Y
E
Q
T
G
F
Q
E
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
57
Fugue
66.45
15%
-98
- C1 -
1VKC
8
?
A:
[10-158]
E
Y
T
I
V
D
G
E
E
Y
I
E
E
I
K
K
L
D
R
E
I
S
Y
S
F
V
R
F
P
I
-
S
Y
E
E
------
Y
E
E
------
R
----
H
-----
E
----
E
L
----
F
E
S
L
----
L
-----
S
---
Q
-
G
-
E
H
K
F
F
V
A
L
N
E
R
S
E
L
L
G
H
V
W
I
C
I
--
T
L
D
T
V
---
D
Y
V
K
I
A
Y
I
Y
-
D
I
E
V
V
K
W
A
R
G
L
G
I
G
S
A
----
L
L
R
K
A
E
E
W
A
K
E
--
R
G
-------
A
K
K
I
V
L
R
V
-
E
I
D
N
P
A
V
K
W
Y
E
E
R
G
Y
K
A
R
A
L
I
M
E
K
-
P
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
65.18
23%
-108
- C1 -
2FL4
-
?
A:
[13-128]
-------------------
R
K
A
V
E
N
L
Q
V
F
A
-
E
Q
Q
A
------
F
I
E
------
S
----
M
-----
A
----
E
N
----
L
K
E
S
----------
D
---
Q
-
F
-
P
E
W
E
S
A
G
I
Y
D
G
N
Q
L
I
G
Y
A
M
Y
G
R
--
W
--------
Q
D
G
R
V
W
L
D
-
R
F
L
I
D
Q
R
F
Q
G
Q
G
Y
G
K
A
A
C
R
L
L
M
L
K
L
I
E
K
Y
Q
T
------------
N
K
L
Y
L
S
V
Y
D
T
N
S
S
A
I
R
L
Y
Q
Q
L
G
F
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
62.81
13%
-79
- C1 -
3DDD
5
?
A:
[13-262]
--
E
N
L
Y
F
Q
G
M
I
I
R
Y
A
T
P
D
D
I
E
D
M
V
S
I
F
I
D
A
-
Y
N
F
P
------
G
P
R
------
E
S
---
V
-----
K
----
S
S
----
F
E
I
S
----
L
-----
E
---
V
-
Q
-
P
D
G
C
L
L
A
F
L
-
K
D
E
P
V
G
M
G
C
I
F
F
--
Y
N
---------
K
Q
A
W
I
G
-
L
M
G
V
K
K
A
Y
Q
R
R
G
I
G
T
E
----
V
F
R
R
L
L
E
I
G
R
R
---
K
-------
V
D
T
I
R
L
D
A
---
S
S
Q
G
Y
G
L
Y
K
K
F
K
F
V
D
E
Y
R
T
V
R
Y
-
E
L
M
----------
E
R
P
I
K
R
V
E
G
V
V
E
V
N
K
------------
I
-
P
N
W
V
--
K
-
E
I
D
K
--
K
----
A
F
G
D
D
R
I
R
V
L
E
A
Y
M
R
R
G
A
R
L
L
C
A
--
E
--
N
E
G
F
G
L
V
Y
R
---------
G
K
I
G
P
L
V
A
D
S
P
R
V
A
E
K
I
L
L
K
A
F
Q
L
---
G
-----
A
R
E
I
I
I
P
E
-
V
N
K
D
A
L
E
L
I
K
I
F
K
P
S
Q
V
T
S
-------------
4
PsiBlast_PDB
62.67
29%
-113
- C1 -
1WWZ
1
?
A:
[64-145]
---------------------------------------------------------------------------------------------------------
D
K
I
V
G
F
I
V
C
D
K
D
W
F
S
K
Y
E
G
----
R
I
V
G
A
I
H
-
E
F
V
V
D
K
K
F
Q
G
K
G
I
G
R
K
----
L
L
I
T
C
L
D
F
L
-
G
K
Y
N
D
-------
T
I
E
L
W
--
V
G
E
K
N
Y
G
A
M
N
L
Y
E
K
F
G
F
K
K
V
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------