@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA2055: (2016-03-31 )
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
Atome Classification :
(19 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........-.10-.....-...20......----..30........40........50....-...-.60.....-.---..70.....----------------....80...----.....90........100...---------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
Q
F
Y
L
I
L
L
-
A
I
L
-
Y
L
I
V
S
-
F
I
S
I
F
K
M
E
V
V
F
----
T
R
I
L
R
I
I
M
G
V
L
L
L
F
V
L
A
L
T
TMSFPKE
N
W
-
W
V
F
-
I
V
L
L
L
L
VG-N---VEV-
T
G
F
K
M
----------------
L
K
K
D
LKG
V
N
----
I
L
N
L
M
S
L
F
I
F
V
I
Y
F
I
L
T
I
V
LF---------------------------------------------------------------------------------------
14
Fugue
88.09
19%
-170
- C6 -
2KL8
-
?
A:
[1-85]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
M
D
I
R
F
----
R
G
------
D
D
L
E
A
F
E
K
A
L
K
E
M
I
R
Q
A
R
K
F
--
A
G
-
T
V
T
Y
T
L
D
G
-
N
D
L
E
I
R
I
-
T
G
V
P
E
----------------
Q
V
R
K
E
L
A
K
E
----
A
E
R
L
A
K
E
F
N
I
T
V
T
Y
T
I
R
L
E
H
H
HHHH-----------------------------------------------------------------------------------
21
Fugue
76.68
18%
-192
- C7 -
2KK4
-
Y2094_ARCFU
A:
[1-95]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
H
M
D
L
I
-
C
-
M
-
Y
V
F
K
G
-
E
E
S
F
G
E
S
I
D
V
Y
----
G
D
Y
L
I
V
K
V
G
T
---
E
F
L
A
V
P
K
K
S
I
K
S
V
E
D
-
G
R
I
-
V
I
G
E
F
D
E
E
-
E
---
A
R
E
-
L
G
R
K
W
----------------
L
E
E
K
S
K
P
V
T
----
L
E
E
L
K
S
-
Y
G
F
G
E
E
G
E
G
S
-------------------------------------------------------------------------------------------
17
Fugue
76.01
19%
-154
- C6 -
1TBA
-
TAF1_DROME
A:
[11-77]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
S
I
G
-
N
G
L
-
D
L
T
G
I
L
F
G
-
N
---
I
D
S
-
E
G
R
L
L
Q
DDDGEGRGGTGFDA
E
L
R
E
N
I
G
S
L
S
----
K
L
G
L
D
S
M
L
L
E
V
I
D
L
K
E
A
-------------------------------------------------------------------------------------------
15
Fugue
72.87
14%
-201
- C6 -
2KZ0
-
?
A:
[1-76]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
G
S
M
T
V
T
Q
----
S
Q
L
E
L
L
I
R
N
A
F
P
E
A
E
I
T
V
T
S
L
V
G
D
N
N
H
Y
-
S
I
K
-
V
I
S
S
Q
F
Q
G
-
K
---
S
K
L
-
E
Q
H
R
M
----------------
I
Y
K
V
L
D
G
L
N
----
I
H
A
I
Q
----------
I
Q
T
G
C
K
---------------------------------------------------------------------------------------
1
PsiBlast_PDB
66.30
36%
-67
- C6 -
2J8Z
1
QORX_HUMAN
A:
[135-178]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
L
T
Q
A
A
A
I
P
E
A
W
-
L
T
A
-
F
Q
L
L
H
L
V
G
-
N
---
V
Q
A
-
G
D
Y
V
L
----------------
I
H
A
G
L
S
G
V
-----------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
64.70
36%
-67
- C6 -
2OBY
1
QORX_HUMAN
A:
[119-159]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
L
T
Q
A
A
A
I
P
E
A
W
-
L
T
A
-
F
Q
L
L
H
L
V
G
-
N
---
V
Q
A
-
G
D
Y
V
L
----------------
I
H
A
G
L
S
G
V
-----------------------------------------------------------------------------------------------------------------
19
Fugue
64.35
16%
-104
* C7 *
2Q97
1
?
T:
[1-109]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
Q
E
L
G
L
L
R
P
E
E
-
R
L
I
A
G
-
Q
A
K
A
A
A
L
Q
T
V
H
QLGA
V
A
L
T
P
E
Q
A
K
A
A
L
L
D
E
I
L
R
A
T
Q
N
L
D
L
R
K
Y
-
E
--------
N
L
N
-
T
---
E
Q
Q
-
K
A
Y
E
Q
----------------
V
Q
R
D
L
S
Q
L
S
PETK
A
L
L
I
E
N
Q
R
K
E
K
T
L
L
E
K
A
R
K
L
F
QR-------------------------------------------------------------------------------------
16
Fugue
62.86
20%
-15
- C6 -
3GXQ
2
?
A:
[2-54]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
S
V
F
F
----
G
K
K
K
K
V
S
L
H
L
L
V
D
P
D
M
K
D
E
I
I
K
Y
A
Q
E
K
D
-
F
----------
D
-
N
---
V
S
Q
-
A
G
R
E
I
----------------
L
K
K
G
L
E
Q
I
A
----------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
57.77
34%
-41
- C6 -
2X7F
1
TNIK_HUMAN
A:
[127-182]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
E
W
-
I
A
Y
-
I
C
R
E
I
L
R
G
-
L
---
S
H
L
-
H
Q
H
K
V
----------------
I
H
R
D
I
K
G
Q
N
----
V
L
----------------------------------------------------------------------------------------------------------
13
HHSearch
56.01
18%
-74
- C6 -
3DIN
-
SECG_THEMA
E:
[13-70]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
A
L
I
Y
M
V
Q
V
Q
M
S
K
F
S
E
-------
L
G
G
A
F
G
S
G
---
G
L
H
-
T
V
F
G
R
----------------
R
K
G
L
----
D
----
T
G
G
K
I
T
L
V
L
S
V
L
F
F
V
S
C
V
V
T
----------------------------------------------------------------------------------------
11
HHSearch
51.58
46%
117
- C6 -
1NLX
21
MPAP6_PHLPR
A:
[90-102]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
F
----
S
E
A
L
R
I
I
A
G
T
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
49.55
25%
2
- C6 -
2K9P
-
STE2_YEAST
A:
[75-94]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
R
K
T
P
I
F
----
I
I
N
Q
V
S
L
F
L
I
I
L
H
-----------------------------------------------------------------------------------------------
22
Fugue
47.70
7%
-93
- C5 -
1SZQ
-
PRPD_ECOLI
A:
[11-483]
EFD
R
E
I
V
D
I
V
D
Y
V
M
NYEISS
K
V
A
Y
D
T
A
H
Y
C
L
L
D
T
L
G
C
G
L
E
A
L
E
Y
P
A
C
K
K
L
LGPIVPG
T
V
V
P
NGVRVPGTQ
F
Q
L
D
P
V
Q
A
A
F
N
I
G
A
M
I
R
WLDF
N
D
T
W
L
A
A
E
W
G
H
PSDN
L
G
G
I
L
A
T
A
D
W
L
S
R
N
A
V
A
S
G
K
A
P
L
T
M
K
Q
V
L
T
A
M
I
K
A
H
E
I
Q
G
C
I
A
L
ENSFNRVGLDH
V
L
L
V
K
V
A
S
T
A
V
V
A
E
M
L
GLT
R
E
E
I
L
N
A
V
S
L
A
W
V
D
G
Q
S
L
RTYRHAPNTGTRKSW
A
A
G
D
A
T
S
R
A
V
R
L
A
L
M
A
K
T
G
E
M
G
Y
PSALTAPVWGFYDVSFKG
E
S
F
R
F
QRPYGS
Y
V
M
E
N
VLFKISFPA
E
F
H
S
Q
T
A
V
-
E
A
A
M
T
L
Y
E
Q
M
Q
A
A
G
K
T
A
A
D
I
E
----
K
V
T
I
R
T
H
E
A
C
I
R
I
I
D
K
K
G
P
L
N
N
P
A
D
R
D
H
C
I
Q
Y
M
V
A
I
P
L
L
F
G
-
R
---
L
T
A
-
A
D
Y
E
------------------
D
N
V
A
Q
D
K
R
----
I
D
A
L
R
E
K
I
N
C
F
E
D
P
A
F
T
A
D
Y
H
DPEKRAI
A
N
A
I
T
L
E
F
TDGTRFE
E
V
V
V
EYPIGHARR
R
Q
D
G
I
P
K
L
V
D
K
F
K
I
N
L
A
R
Q
FP
T
R
Q
Q
Q
R
I
L
E
V
S
L
D
R
A
R
L
E
Q
MP
V
N
E
Y
L
D
L
Y
VI
18
Fugue
45.49
42%
134
- C6 -
1XKM
3
?
A:
[1-22]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
-
N
---
R
E
V
P
P
G
F
T
A
----------------
L
I
K
T
L
R
K
C
K
----
I
I
----------------------------------------------------------------------------------------------------------
6
HHSearch
40.34
33%
126
- C4 -
2IAY
-
?
A:
[61-87]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
V
-
N
---
A
D
L
-
T
G
F
K
M
----------------
T
T
V
T
G
N
G
V
Q
----
R
A
N
I
F
K
------------------------------------------------------------------------------------------------------
10
HHSearch
36.04
60%
379
- C3 -
2K98
-
?
A:
[4-13]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
F
----------------
L
K
K
A
K
K
G
I
-----------------------------------------------------------------------------------------------------------------
23
Fugue
34.85
8%
39
* C6 *
1Y04
-
ANP3_MYOSC
A:
[1-35]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
M
N
A
P
A
R
A
A
-
A
K
T
-
A
A
D
A
L
A
A
A
-
K
---
K
T
A
-
A
D
A
A
A
----------------
A
A
A
A
A
--------------------------------------------------------------------------------------------------------------------
8
HHSearch
17.52
27%
550
- C2 -
2HEQ
-
YORP_BACSU
A:
[55-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
---
G
D
I
-
T
Y
F
K
E
----------------
H
E
-----------------------------------------------------------------------------------------------------------------------
9
HHSearch
12.99
0%
668
- C1 -
3L1L
-
ADIC_ECO57
A:
[407-413]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
E
V
-
M
W
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------