@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA2389: (2016-04-03 )
MTKIFKISFLILLVVIVSSYYGESFVLADNNPIVNSENGSDNNFESGTIERNQNELYEVGDYSTPLTERVFGKDQRTVVNNILQRPYKQTVLLNMTFSNNRVYKGTGTMIGKDIVLTAAHNVYSKDDKGWAKKIDVYAGVNGQTYTIGKAFSHKFFVSKTWINNLTIV
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40........50........60........70........80........90........100.......110-.........120-.........--130.......140..--------..---...150.......160......----------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MT
K
I
F
K
I
S
F
L
I
L
L
V
V
I
V
S
S
YYG
E
S
F
V
LADNNPIVNSENGSDNNFESG
T
I
ERNQNE
L
Y
EVGDYST
P
L
T
E
R
V
FGK
D
Q
R
T
V
V
N
N
I
L
QRPYK
Q
T
V
L
L
N
M
T
FSN
N
R
V
Y
KGTGTMI---GK
D
I
V
L
T
AAH---NVYSKDDKG--W
A
K
K
I
D
V
Y
AGVNG
Q
T
--------
Y
T
---
I
GKAFS
H
K
F
F
V
S
KTWINNLTIV----------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
94.74
34%
-87
- C3 -
1P3E
-
?
A:
[2-90]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
G
D
D
G
R
T
K
V
A
N
T
R
V
A
P
Y
N
S
I
A
Y
I
--
T
F
G
G
S
S
C
---
T
G
T
L
I
---
A
P
N
K
I
L
T
N
G
H
---
C
V
Y
N
T
A
S
R
S
--
Y
S
A
K
G
S
V
Y
P
G
M
N
D
S
T
--------
A
V
---
N
G
S
A
N
M
T
E
F
Y
V
P
S
G
Y
I
N
---------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
93.30
34%
-87
- C3 -
1P3C
-
?
A:
[2-90]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
G
D
D
G
R
T
K
V
A
N
T
R
V
A
P
Y
N
S
I
A
Y
I
--
T
F
G
G
S
S
C
---
T
G
T
L
I
---
A
P
N
K
I
L
T
N
G
H
---
C
V
Y
N
T
A
S
R
S
--
Y
S
A
K
G
S
V
Y
P
G
M
N
D
S
T
--------
A
V
---
N
G
S
A
N
M
T
E
F
Y
V
P
S
G
Y
I
N
---------------------------------------------------------------------------------------------------------------------------
23
HHSearch
90.94
33%
-81
- C3 -
1P3C
-
?
A:
[1-90]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
I
G
D
D
G
R
T
K
V
A
N
T
R
V
A
P
Y
N
S
I
A
Y
I
T
F
-----
G
G
S
S
C
T
G
T
L
I
---
A
P
N
K
I
L
T
N
G
H
---
C
V
Y
N
T
A
S
R
S
--
Y
S
A
K
G
S
V
Y
P
G
M
N
D
S
T
--------
A
V
---
N
G
S
A
N
M
T
E
F
Y
V
P
S
G
Y
I
N
---------------------------------------------------------------------------------------------------------------------------
51
Fugue
73.63
15%
-40
- C3 -
2F83
3
FA11_HUMAN
A:
[20-622]
CV
T
Q
L
L
K
DTCFEGGDI
T
T
V
F
T
PS
A
K
Y
C
Q
V
V
C
T
Y
HPRCL
L
F
T
F
T
A
ESPSEDPTRWF
T
C
V
L
K
D
S
V
TET
L
P
R
V
N
R
T
A
A
I
S
G
Y
S
FKQCSHQISACNK
D
I
Y
V
D
L
D
M
K
G
INY
N
S
S
V
A
KS
A
Q
E
C
Q
E
R
C
T
D
DVHCH
F
F
T
Y
ATRQFPSLEHRN
I
C
L
L
K
H
T
QTGTPT
R
I
T
K
L
D
K
V
V
S
G
F
S
LKSCALSN
L
A
C
I
R
D
I
F
P
N
T
V
F
A
D
SNI
D
S
V
M
A
PD
A
F
V
C
G
R
I
C
T
H
HPGCL
F
F
T
F
F
S
QEWPKESQRN
L
C
L
L
K
T
S
ESGLPS
T
R
I
K
K
S
K
A
L
S
G
F
S
LQSCRHSIPVFCHS
S
F
Y
H
D
T
D
F
L
G
EEL
D
I
V
A
A
K
S
H
E
A
C
Q
K
L
C
T
N
AVRCQ
F
F
T
Y
T
P
A
Q
A
S
C
N
E
G
K
G
K
C
Y
L
K
L
S
S
N
G
S
P
T
K
I
L
H
G
R
G
G
I
S
G
Y
T
L
R
L
C
K
M
D
N
E
C
T
T
K
I
K
P
R
I
--
V
G
G
T
A
S
V
R
G
E
W
----------------
P
W
Q
V
T
L
H
T
T
---
S
P
T
Q
R
H
L
C
G
G
S
I
I
---
G
N
Q
W
I
L
T
A
A
H
---
C
F
Y
G
V
E
S
-----
P
K
I
L
R
V
Y
S
G
I
L
N
Q
S
EIKED
T
S
F
F
G
---
V
Q
E
I
I
I
H
D
Q
Y
K
M
A
E
S
G
Y
D
I
A
L
L
K
L
ETTVNYTDS
Q
R
P
I
C
L
PSKGDRNVIYT
D
C
W
V
T
GWGKIQN
T
L
Q
K
A
K
I
P
L
V
T
N
E
E
C
Q
K
R
YRG
H
K
I
T
HKMICAKGDSGGPL
S
C
K
H
NEVWHLVGITSWGEGER
P
G
V
Y
T
NVVEY
V
D
W
I
L
E
K
T
8
PsiBlast_PDB
73.04
24%
-37
- C3 -
1A5I
2
A:
[21-113]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
T
S
H
P
W
Q
A
A
I
F
A
Q
N
R
R
S
S
G
E
R
F
L
C
G
G
I
L
I
---
S
S
C
W
V
L
T
A
A
H
CFQ
E
S
Y
L
P
D
Q
L
K
V
V
L
G
R
T
Y
R
V
K
P
G
E
E
E
Q
T
--------
F
K
---
V
K
K
Y
I
V
H
K
E
F
D
D
D
T
Y
N
N
D
I
A
L
L
----------------------------------------------------------------------------------------------------------------------
29
HHSearch
70.14
20%
-34
- C3 -
2B9L
3
?
A:
[137-225]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
Y
G
E
F
P
W
M
V
A
V
L
K
A
N
----
E
E
Q
L
V
C
G
G
S
L
I
---
A
P
S
V
V
L
T
G
A
H
---
C
V
N
S
Y
Q
S
----
N
L
D
A
I
K
I
R
A
G
E
W
D
T
L
TEKER---
L
P
---
Y
Q
E
R
K
I
R
Q
V
I
I
H
S
N
F
N
P
---------------------------------------------------------------------------------------------------------------------------
38
HHSearch
69.49
16%
-92
- C3 -
3WY8
-
?
A:
[5-86]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
P
V
K
H
--
I
G
K
I
F
F
T
L
-
G
G
S
N
Y
V
C
S
G
N
S
V
TAA
N
K
S
T
V
S
T
A
G
H
---
C
L
N
E
G
P
-
G
A
--
Y
A
T
N
F
I
F
V
P
A
Y
L
N
G
A
--------
A
P
---
Y
G
K
W
T
A
K
A
L
Y
A
P
T
Q
W
A
S
N
--------------------------------------------------------------------------------------------------------------------------
49
HHSearch
67.65
20%
-40
- C3 -
2XW9
-
CFAD_HUMAN
A:
[7-83]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
A
H
A
R
P
Y
M
A
S
V
Q
L
------
N
G
A
H
L
C
G
G
V
L
V
---
A
E
Q
W
V
L
S
A
A
H
---
C
L
E
D
A
A
------
D
G
K
V
Q
V
L
L
G
A
H
S
L
S
--------
Q
P
EPS
K
R
L
Y
D
V
L
R
A
V
P
H
P
D
S
Q
P
---------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
66.81
32%
-66
- C3 -
3SOS
2
A:
[12-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
W
Q
V
T
L
H
T
T
S
P
T
Q
R
H
L
C
G
-
G
S
I
I
---
G
N
Q
W
I
L
T
A
A
H
---
C
F
Y
G
V
E
S
-----
P
K
I
L
R
V
Y
S
G
I
L
N
Q
S
---------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
66.19
32%
-71
- C3 -
1ZPZ
1
A:
[12-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
W
Q
V
T
L
H
T
T
S
P
T
Q
R
H
L
C
G
-
G
S
I
I
---
G
N
Q
W
I
L
T
A
A
H
---
C
F
Y
G
V
E
S
-----
P
K
I
L
R
V
Y
S
G
I
L
N
Q
S
---------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
65.91
20%
-32
* C3 *
1EQ9
2
CTR1_SOLIN
A:
[7-82]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
V
G
K
Y
P
Y
Q
V
S
L
R
L
S
------
G
S
H
R
C
G
A
S
I
L
---
D
N
N
N
V
L
T
A
A
H
---
C
V
D
G
L
S
N
-----
L
N
R
L
K
V
H
V
G
T
N
Y
L
S
--------
E
S
---
G
D
V
Y
D
V
E
D
A
V
V
N
K
N
Y
D
D
F
--------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
65.54
32%
-70
- C3 -
1XX9
-
ECOT_ECOLI (first)
A:
[12-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
W
Q
V
T
L
H
T
T
S
P
T
Q
R
H
L
C
G
-
G
S
I
I
---
G
N
Q
W
I
L
T
A
A
H
---
C
F
Y
G
V
E
S
-----
P
K
I
L
R
V
Y
S
G
I
L
N
Q
S
---------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
64.61
32%
-66
- C3 -
4X6P
3
A:
[12-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
W
Q
V
T
L
H
T
T
S
P
T
Q
R
H
L
C
G
-
G
S
I
I
---
G
N
Q
W
I
L
T
A
A
H
---
C
F
Y
G
V
E
S
-----
P
K
I
L
R
V
Y
S
G
I
L
N
Q
S
---------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
64.47
21%
-36
- C3 -
3W94
-
?
A:
[8-87]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
G
A
W
P
W
M
V
S
--
L
H
W
R
----
G
R
H
G
C
G
A
S
L
I
---
G
R
D
W
L
L
T
A
A
H
---
C
V
Y
G
K
N
T
----
H
L
Q
Y
W
S
A
V
L
G
L
H
A
Q
S
SMNS----
Q
E
---
V
Q
I
R
Q
V
D
R
I
I
I
N
K
N
Y
N
R
R
--------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
64.41
32%
-69
- C3 -
4NA8
3
A:
[12-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
W
Q
V
T
L
H
T
T
S
P
T
Q
R
H
L
C
G
-
G
S
I
I
---
G
N
Q
W
I
L
T
A
A
H
---
C
F
Y
G
V
E
S
-----
P
K
I
L
R
V
Y
S
G
I
L
N
Q
S
---------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
62.38
32%
-69
- C3 -
1ZSL
1
A:
[12-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
W
Q
V
T
L
H
T
T
S
P
T
Q
R
H
L
C
G
-
G
S
I
I
---
G
N
Q
W
I
L
T
A
A
H
---
C
F
Y
G
V
E
S
-----
P
K
I
L
R
V
Y
S
G
I
L
N
Q
S
---------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
62.23
32%
-68
- C3 -
1ZRK
1
A:
[12-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
W
Q
V
T
L
H
T
T
S
P
T
Q
R
H
L
C
G
-
G
S
I
I
---
G
N
Q
W
I
L
T
A
A
H
---
C
F
Y
G
V
E
S
-----
P
K
I
L
R
V
Y
S
G
I
L
N
Q
S
---------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
61.77
32%
-56
- C3 -
4NA7
2
A:
[12-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
W
Q
V
T
L
H
T
T
S
P
T
Q
R
H
L
C
G
-
G
S
I
I
---
G
N
Q
W
I
L
T
A
A
H
---
C
F
Y
G
V
E
S
-----
P
K
I
L
R
V
Y
S
G
I
L
N
Q
S
---------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
61.72
32%
-71
- C3 -
3SOR
1
A:
[12-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
W
Q
V
T
L
H
T
T
S
P
T
Q
R
H
L
C
G
-
G
S
I
I
---
G
N
Q
W
I
L
T
A
A
H
---
C
F
Y
G
V
E
S
-----
P
K
I
L
R
V
Y
S
G
I
L
N
Q
S
---------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
61.52
16%
-38
- C3 -
2ZGC
1
GRAM_HUMAN
A:
[7-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
P
H
S
R
P
Y
M
A
S
L
Q
R
------
N
G
S
H
L
C
G
G
V
L
V
---
H
P
K
W
V
L
T
A
A
H
---
C
L
A
Q
R
M
-------
A
Q
L
R
L
V
L
G
L
H
T
L
D
--------
S
P
---
G
L
T
F
H
I
K
A
A
I
Q
H
P
R
Y
K
P
---------------------------------------------------------------------------------------------------------------------------