@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
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Column output:
Score:
Atome Rank Value
Tools Score
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Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
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Structural Clustering:
Cluster Num
3D-Jury Struct. Score
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Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
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Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA2401: (2016-04-03 )
MHPRKTLQLPLILKIILNLALIGIVIIVLTHTEFQLNAGDSNVFLLNWDIRGLTSYIFSFLILVALVSKLILIFITRRQRTS
Atome Classification :
(13 SA)
--------------------------------------------------------------------------------------------------......------------...10.......------------.20-------.-------.......30....---...-----.40.------.......50---------....---...------.60.-.......70........80.----------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------MHPRKT------------LQLPLILKIILN------------LAL-------I-------GIVIIVLTHTEFQ---LNA-----GDSN------VFLLNWDIR---------GLTS---YIF------SFLI-LVALVSKLILIFITRRQRTS----------------------------------------
17
Fugue
87.25
19%
-198
- C5 -
3C0F
-
Y1514_ARCFU
B:
[3-87]
-------------------------------------------------------------------------------------------------I
M
D
E
I
V
N
------------
L
Q
K
E
V
S
L
E
E
A
E
R
------------
Y
A
N
-------
I
ASYGD--
G
I
L
L
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H
D
S
T
G
Y
R
APE
V
Y
C
-----
C
G
E
K
------
P
W
E
V
Y
A
C
N
R
---------
G
A
N
-------------------
L
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F
E
F
Y
F
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I
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V
E
G
------------------------------------------
10
Fugue
85.36
20%
-175
* C6 *
2COV
-
3XYN_ALCSP
D:
[378-469]
----------------------------------------------------------------------------------------------------
P
P
E
N
------------
C
Q
D
D
------
F
N
------------
F
N
Y
-------
V
-------
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E
I
E
V
Y
H
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K
G
---
W
S
A
-----
G
W
N
Y
------
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C
L
N
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Y
C
L
P
---------
G
N
K
S
NGA
F
R
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------
T
F
N
A
-
V
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D
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G
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G
Q
QILDRNITFTTQVCN-------------------------
14
Fugue
84.57
21%
-154
- C6 -
4PLO
-
B:
[1-204]
---GADESQVPDQPS
S
L
H
V
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P
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TN
C
I
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T
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P
LNPNIVVR
G
Y
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I
G
Y
G
VGSPYA
E
T
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V
D
SKQRYYSI
E
R
L
E
S
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H
Y
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S
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A
F
N
NAGE
G
V
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R
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------------
V
S
T
P
M
-------------------
L
P
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-------
V
-------
G
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S
M
T
A
H
A
T
T
Y
EA---------------------------
18
Fugue
82.03
22%
-161
* C5 *
4U9V
1
NAA40_HUMAN
B:
[1-197]
SVCAKVDAANRLGDPLEAFPVFKKYDRNGLNVSIECKRVSGLEPATVDWAFDLTKTNMQTMYEQSEWGWKDREKREEMTDDRAWYLIAWENSSVPVAF
S
H
F
R
F
D
------------
V
E
C
G
-----------------------------------------
D
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--------------
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---------
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---
F
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-
L
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H
GAYQFFREALQFEIDDSSPSMSGCCGEDCSYEILSRRTKF
12
Fugue
79.68
19%
-172
- C5 -
1V9V
-
A:
[1-114]
---------------------------------------------------------------------------------------------GSSGS
S
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A
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------------
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F
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A
Y
APGARLALAD
G
V
L
-------
G
-------
F
I
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H
Q
I
V
E
L
A
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C
---
L
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LVT
S
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Y
F
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---------
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---
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RSD
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G
P
SSG-------------------------------------
13
Fugue
65.99
21%
-139
- C3 -
2X4J
-
?
A:
[16-136]
--------------------------------------------------------------------------------------------------
F
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S
PLKHVD
I
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E
A
V
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N
------------
F
L
I
D
AGDKMC
V
-------
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S
---
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KVPKG
I
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---------
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---
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-
L
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--
D
I
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Y
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V
Y
A
L
C
W
P
K-----------------------------------
15
Fugue
61.13
12%
-107
- C6 -
1G6Z
-
CLR4_SCHPO
A:
[-2-69]
--------------------------------------------------------------------------------------------------
S
P
K
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E
E
------------
Y
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D
-----------------------------------------------
R
N
-----
G
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------
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I
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W
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N
Y
---------
S
S
R
S
---
D
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W
------
E
P
P
E
-
N
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C
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A
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K
R
R
K
R
R
L
K
GSNS------------------------------------
9
Fugue
56.65
16%
-132
- C2 -
1O22
-
?
A:
[6-154]
--------------------------------------------------------------------I
L
E
I
L
Y
Y
K
K
GKEF
G
I
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K
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TG
V
S
L
E
P
V
N
S
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E
L
I
G
R
I
F
L
K
------------
I
S
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L
E
EG
E
E
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A
L
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K
E
N
A
---
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L
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P
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------
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---------
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GWNPGE
Y
T
F
S
V
Q
E
I--------
6
HHSearch
38.10
35%
-55
- C4 -
2BG9
-
?
E:
[273-388]
----------------------------------------------------------------------------------------------------
P
E
T
S
------------
L
N
V
P
L
I
G
K
Y
L
I
F
------------
V
------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
30.46
17%
-114
- C4 -
1B9U
-
ATPF_ECOLI
A:
[8-25]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
---
Q
A
I
------
A
F
V
L
-
F
V
L
F
C
M
K
Y
V
---------------------------------------------------
5
HHSearch
23.30
12%
-83
* C4 *
2LOT
-
APJ_HUMAN
A:
[31-55]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
---
A
I
Y
------
M
L
V
F
-
L
L
G
T
T
G
N
G
L
V
L
W
T
V
F
R
--------------------------------------------
8
HHSearch
22.52
16%
13
- C4 -
1NYR
1
SYT_STAAW
A:
[47-83]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
L
T
K
P
---
L
E
T
-----
D
G
S
I
------
E
I
V
T
P
G
S
E
E
---------
A
L
E
V
---
L
R
H
------
S
T
A
H
-
L
M
A
H
--------------------------------------------------------
4
HHSearch
17.07
43%
364
- C1 -
2RDD
-
YAJC_ECOLI
B:
[18-24]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
M
I
L
R
P
Q
-------------------------------------------