@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0019: (2015-12-11 )
MKKFLFKQKFCESLPKSFSKTLLALSLGLILLGVFIPFPKVPKHQSVPLALHFTEHYARFIPTILSVAIPLIQRDAVGLFQVANASIATTFLTHATKRALNHVTINDQRLGERPYGGNFNMPSGHSSMVGLAVAFLMRRYSVKKYLWLLPLIPLTMLARIYLDMHTIGAVLAGLGTGMLCVGLFTSPKNLN
Atome Classification :
(20 SA)
--------------------------------------------------------.........---10----..----.......20..-----......30.--..----..-..-.40...--------...-----..50..-......60--------.---.....----.-----..70.--------...-----------....80.-.......---------------90.--.......100....---..-------.-----110---.-.---.-----------------......120.......130-..-......140.----------------------------------------------------.----.---..--..150.------------...-...160...----....170.......----------.180.......190-----------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------MK
K
F
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---
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-----
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L
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--
G
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----FI-PF-PKVPKH--------QSV-----
P
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A
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-
T
E
H
Y
A
R
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---------
I
---
P
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----
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-----
A
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P
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I
--------QRD-----------AVG
L
F
Q
V-AN
A
S
I
A
T
---------------
T
F
L
--
T
H
A
T
K
RAL
N
H
V
T
IN---
D
Q
-------R-----L-----G-E---R-----------------PYGGNFNMPSG
H
S
S
M
V
G
L
--
A
V
-
A
F
L
M
R
R
Y
S
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K
----------------------------------------------------
K
----
Y
---
L
W
--LL
P
L
I
P
------------
L
T
M
-
L
A
R
I
Y
L
D
M
H
----
T
I
G
A
V
-
L
A
G
LG
T
G
M
----------
L
C
V
GLFTSPKNLN------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
83.60
13%
-118
* C8 *
1D2T
1
?
A:
[7-230]
------------------------------------------------GNDTTTKP
D
L
Y
Y
L
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N
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AIN
S
-----
L
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----
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--------
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A
-----
A
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A
N
A
---------
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---
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G
A
F
G
----
S
-----
P
I
T
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--------
D
A
P
-----------
A
L
H
K
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-
N
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G
---------------
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L
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--
T
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S
A
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A
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-------
Y
GVSTC
N
-----
T
-
Q
---
D
-----------------
K
L
S
K
N
G
S
Y
P
S
G
H
T
-
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--
A
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-
A
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V
L
A
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N
P
Q
----------------------------------------------------
R
----
Q
---
N
E
--
I
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Y
------------
E
L
G
-
Q
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A
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A
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N
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A
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A
E
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H
Q
K---------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
81.43
19%
-108
- C6 -
3R0R
4
?
A:
[33-226]
------------------------------------------------------HP
F
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--
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----
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-
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-----
P
G
G
--------
G
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-----
P
R
S
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P
F
-
E
Y
Y
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---------
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---
K
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E
F
W
----
P
-----
C
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P
I
T
--------
Q
G
D
-----------
R
-------
G
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G
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A
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--------------------------------
I
L
---
D
D
-------
N
-----
F
-----
V
-
T
---
K
-----------------
A
T
A
L
T
Y
D
P
Y
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N
Y
S
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R
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P
F
-
S
Y
H
S
R
Y
F
T
P
K
----------------------------------------------------
P
----
V
---
L
D
ST
I
D
Y
F
Q
P
------------
N
N
K
-
R
N
Q
L
W
L
R
L
Q
----
T
A
G
N
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D
H
V
G
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G
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A
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D
P
P
L------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
81.38
18%
-107
- C4 -
5CPC
-
?
A:
[30-317]
---K
A
I
H
M
GGWDKVQDHFRAEK
K
D
H
A
L
E
V
L
H
S
I
I
HGEMEVNV
E
D
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A
H
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---
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-----
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----
I
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D
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-
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E
E
R
-----
Q
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F
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I
-
C
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---------
M
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WH
P
E
L
L
Q
----
E
-----
S
I
S
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--------
R
K
E
-----------
V
T
G
N
A
Q
I
-
K
T
A
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M
M
RPAEAPDHPL
V
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S
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--
T
A
D
E
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A
C
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A
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---
N
F
EPTTQFC
K
-----
I
-----
G
-
Y
---
Q
-----------------
E
V
Q
G
E
V
A
F
S
M
M
H
-----
P
--
C
I
-
S
Y
L
L
H
S
Y
S
P
F
----------------------------------------------------
S
----
E
---
F
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--
P
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N
S
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F
------------
L
K
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-
L
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Y
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D
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A
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I
-
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ERS-------
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D
G
C
S
R
N
I
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LT----------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
77.25
13%
-115
- C7 -
4FF5
6
?
A:
[38-266]
-------------------------------------------------N
I
A
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A
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---
I
-----
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GW
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-----
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----
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-
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E
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D
A
--------
S
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NGIDK
A
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K
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I
-
T
E
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K
R
N
---------
V
---
P
V
A
V
Y
----
A
YVAGK
S
V
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E
M
--------
E
K
A
-----------
A
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F
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A
-
A
S
P
Y
S
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---------------
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Y
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-----
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---
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-------
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-----
E
-----
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-
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---
E
-----------------
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K
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A
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--
A
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N
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I
--
Y
V
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Y
F
M
E
E
H
S
I
D
----------------------------------------------------
T
----
G
---
K
F
--
T
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W
I
P
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Y
GSDSGFLESS
P
K
T
-
D
L
D
Y
D
I
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Q
Y
----
T
S
K
G
K
-
I
A
G
F
D
H
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-----------
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N
K
E
E
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F
R
K
L
FLKP--------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
74.81
15%
-117
- C5 -
2Q7E
14
PYLS_METMA
A:
[25-291]
PALT
K
S
Q
T
D
R
L
E
V
L
LNPKDEKP
F
R
E
L
E
S
E
L
L
S
R
R
K
K
D
L
Q
Q
I
Y
A
EEREN
Y
L
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F
V
D
R
G
---
F
-----
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E
Y
-----
I
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--
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----
Q
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-
F
R
-
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N
F
C
--------
L
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P
-----
M
L
A
P
N
L
-
Y
N
Y
L
R
K
L
---------
D
---
R
A
L
P
D
P
I
K
I
F
-----
E
I
G
P
C
--------
Y
R
K
E
SDGKEHLE
E
F
T
M
L
N
F
C
Q
-
M
G
S
G
C
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R
---------------
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--
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I
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L
N
H
L
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---
F
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-----
V
-----
G
-
D
---
S
C
M---------------
V
Y
G
D
T
L
D
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M
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D
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A
--
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---
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----------------------------------------------------
E
----
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---
G
I
--
D
K
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------------
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R
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L
K
V
K
H
----
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-
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Y
N
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I
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T
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
73.70
16%
-122
- C7 -
4KKI
20
TCO1_HUMAN
A:
[24-434]
--------------E
I
C
E
V
S
EENYIRL
K
P
L
L
N
T
M
I
Q
SNYNRGTSA
V
N
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V
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S
L
K
L
V
G
I
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I
Q
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L
M
Q
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---
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----
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-----
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E
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A
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--
I
I
----
L
A
-
L
---
G
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A
E
E
-----
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Y
---
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----
A
-----
E
I
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N
M
--------
E
A
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NGTP-------
L
T
N
Y
Y
Q
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-
S
L
D
V
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A
L
---------------
C
L
F
NG
N
Y
S
T
A
E
V
V
N
H
F
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P
E
---
N
K
-------
N
-----
Y
-----------------------------
Y
F
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Q
F
S
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A
M
A
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--
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K
S
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Q
I
----------------------------------------------------
K
ADEG
S
---
L
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--
N
I
S
I
Y
T
------------
K
S
L
-
V
E
K
I
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E
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----
E
N
G
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I
-
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N
T
F
S
T
G
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----------
A
M
Q
A
L
F
V
S
S
D
Y
Y
N
ENDWN
C
Q
Q
T
L
N
T
V
L
T
E
I
S
Q
GAFSN
P
N
A
A
A
Q
V
LPALMGKTFLDINKDSSCVSA
S
G
N
F
N
IQ
S
Y
I
S
V
N
Y
S
V
R
I
N
E
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Y
F
T
N
V
T
V
L
NGSV
F
L
S
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M
E
K
A
Q
K
M
NDTIF
G
F
T
M
E
E
R
SWGPYITCIQG
L
C
A
N
NNDR
T
Y
W
E
L
L
S
GGEPLSQGAGS
Y
V
V
R
N
GEN
L
E
V
R
WSKYL
4
HHSearch
73.20
16%
-64
- C8 -
3BB0
1
PRXC_CURIN
A:
[337-513]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
-
D
V
A
C
T
D
A
---------------
G
I
F
--
S
W
K
E
K
W
E
F
E
F
W
R
P
L
---
S
G
-------
V
R
----
D
DGRPD
H
-
G
---
D
PFWLTLGAPATNTNDIP
F
K
P
P
F
P
A
Y
P
S
G
H
A
T
F
G
G
A
--
V
F
-
Q
M
V
R
R
Y
Y
N
G
R
V
G
T
W
K
DDEPDNIAIDMMISEELNGVNRDLRQPYDPTAPIEDQPGIVR
T
R
I
V
R
H
----
F
---
D
S
--
A
W
E
L
M
F
------------
E
N
A
-
I
S
R
I
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G
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H
----
W
R
F
D
A
-
A
A
A
R
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I
L
I
----------
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T
T
T
K
D
V
Y
A
V
D
N
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
66.73
18%
-82
- C9 -
1G13
1
SAP3_HUMAN
A:
[1-162]
-----------------------------------------------------------
S
S
F
S
W
D
---
N
-----
C
D
----
E
G
K
D
P
A
V
I
R
S
L
-----
T
L
E
P
D
P
I
I
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P
G
N
V
----
T
L
-
S
V
M
G
S
T
S
V
P
--------
L
S
S
-----
P
L
K
V
D
L
-
V
L
E
K
E
V
-----------------
A
G
----
L
-----
W
I
K
I
P
--------
C
T
D
-----------
Y
I
G
S
C
T
F
-
E
H
--------------------------------------
F
---
C
D
-------
V
-----
L
-----
D
M
L
---
I
-----------------
P
T
G
E
P
C
P
E
P
L
-
R
T
Y
G
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C
--
H
C
-
P
F
K
E
G
T
Y
S
L
P
----------------------------------------------------
K
----
S
---
E
F
--
V
V
P
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L
E
------------
L
P
S
-
W
L
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--
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G
N
Y
----
R
I
E
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V
-
L
S
S
S
G
K
R
L
----------
G
C
I
K
I
A
A
S
L
K
G
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
65.96
16%
-78
- C8 -
1D2T
1
?
A:
[108-211]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
A
--
T
R
S
A
K
D
H
Y
M
R
I
R
P
F
---
A
F
-------
Y
-----
G
VS---
T
-
C
NTQ
D
-----------------
K
L
S
K
N
G
S
Y
P
S
G
H
T
S
I
G
W
A
--
T
A
-
L
V
L
A
E
I
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Q
R
----------------------------------------------------
Q
----
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----
E
--
I
L
K
R
G
Y
------------
E
L
G
-
Q
S
R
V
I
C
G
Y
H
----
W
Q
S
D
V
-
D
A
A
R
V
V
G
S
----------
A
V
V
A
T
L
H
T
N
P
A
F
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
61.19
9%
-88
* C7 *
2HRA
32
SYEC_YEAST
A:
[19-198]
--------------------------------------------------------
M
P
S
T
L
T
I
N
----------
G
K
----
A
P
I
V
A
Y
A
E
L
I
A
-----
A
R
I
V
N
A
L
A
P
--
N
S
----
I
A
-
I
K
-
L
V
D
D
K
K
--------
A
P
A
-----
A
K
L
D
D
A
-
T
E
D
V
F
N
K
---------
I
---
T
S
K
F
A
----
A
-----
I
F
D
N
G
--------
D
K
E
-----------
Q
V
A
K
W
V
N
-
L
A
Q
K
------------------
E
L
V
--
I
K
N
F
A
K
L
S
Q
S
L
E
T
L
---
D
S
-------
Q
-----
L
-----
N
-
L
---
R
-----------------
T
F
I
L
G
----
G
L
K
Y
S
A
A
D
V
--
A
C
-
W
G
A
L
R
S
N
G
M
C
----------------------------------------------------
G
----
S
---
I
I
--
K
N
K
--
V
------------
D
V
N
-
V
S
R
W
Y
T
L
L
E
----
M
D
P
I
F
-
G
E
A
H
D
F
L
S
----------
K
S
L
L
E
L
K
K
S
A
N
V
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
60.85
14%
-97
- C8 -
1QI9
4
PRXV_ASCNO
A:
[391-510]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
N
N
E
V
T
Y
L
L
P
Q
A
I
---
Q
E
-------------------------------------------
G
S
P
T
H
P
S
Y
P
S
G
H
A
T
Q
N
G
A
--
F
A
-
T
V
L
K
A
L
I
G
L
D
R
G
G
DCYPD
P
V
Y
P
D
DDGL
K
L
I
D
F
R
G
SCL-------------------------
T
----
F
E
--
G
E
--
I
N
K
L
A
V
------------
N
V
A
-
F
G
R
Q
M
L
G
I
H
----
Y
R
F
D
G
-
I
Q
G
L
L
L
G
E
----------
T
I
T
V
R
T
L
H
Q
E
L
M
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
59.22
12%
-72
* C9 *
1QUP
2
CCS1_YEAST
A:
[1-221]
--------------------------------------------------------
T
T
N
D
T
Y
E
A
T
---
Y
A
I
P
M
H
C
E
----
N
C
V
N
D
I
K
A
C
L
K
-----
N
V
P
-
G
I
N
S
L
--
N
F
DIEQ
Q
I
M
S
V
-
E
S
S
V
A
P
--------
S
T
I
-----
I
N
T
L
R
N
-
C
G
K
D
A
I
I
R
G
AGKPNS
S
A
---
V
A
I
L
E
----
T
-----
F
Q
K
Y
T
IDQKKDTA
V
R
G
-----------
L
A
R
I
V
Q
V
G
E
N
K
T
L
F
D
---------------
I
T
V
--
N
G
V
P
E
A
G
N
Y
H
A
S
I
H
EKG
D
V
-------
S
-----
K
-----
G
-
V
---
E
-----------------
S
T
G
K
V
W
H
K
F
D
E
P
I
E
C
F
N
E
--
S
D
-
L
G
K
N
L
Y
S
G
K
T
----------------------------------------------------
F
----
L
---
S
A
--
P
L
P
T
W
Q
------------
L
I
G
-
R
S
F
V
I
S
K
S
L
----
N
H
P
E
N
-
E
P
S
S
V
K
D
Y
----------
S
F
L
G
V
I
A
R
S
A
G
V
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
59.06
17%
-120
- C8 -
1UP8
2
PRXV_CORPI
A:
[479-576]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
H
P
S
Y
G
S
G
H
A
V
V
A
G
A
--
C
V
-
T
I
L
K
A
F
F
D
S
G
I
E
I
D
Q
V
F
E
V
D
KDED
K
L
V
K
S
SFK
G
-----------------------------
T
----
L
T
V
A
G
E
--
L
N
K
L
A
D
------------
N
I
A
-
I
G
R
N
M
A
G
V
H
----
Y
F
S
D
Q
-
F
E
S
L
L
L
G
E
----------
Q
V
A
I
G
I
L
E
E
Q
S
L
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
47.51
35%
-100
- C8 -
4L68
-
?
A:
[206-244]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
----
F
---
G
Y
--
V
A
P
E
Y
S
------------
T
T
M
-
L
A
S
L
K
G
D
V
Y
----
G
L
G
V
V
-
L
L
E
L
A
T
G
L
----------
K
A
V
G
G
S
L
V
D
W
V
K
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
47.44
37%
-22
- C3 -
1HN0
-
CABC1_PROVU
A:
[778-809]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
N
V
E
T
---------------
T
L
F
--
Q
H
A
I
T
P
T
L
N
T
L
W
I
N
---
G
Q
-------
K
-----
I
-----
E
-
N
---
M
-----------------
P
Y
Q
T
T
L
Q
Q
G
D
W
L
I
D
S
N
G
N
--
G
Y
-
L
I
T
Q
A
E
K
V
N
V
----------------------------------------------------
S
----
R
---
Q
H
--
Q
V
S
A
E
N
------------
K
N
R
-
Q
P
T
E
G
N
F
S
S
----
A
W
I
D
H
-
S
T
R
P
K
D
A
S
----------
Y
E
Y
M
V
F
L
D
A
T
P
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
33.06
20%
5
- C8 -
1XM5
-
YBEY_ECOLI
A:
[50-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
------------
S
H
S
-
L
N
L
T
Y
R
G
K
D
----
K
P
T
N
V
-
L
S
F
P
F
E
V
P
----------
P
G
M
E
M
S
L
L
G
D
L
V
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
30.90
50%
81
- C8 -
2LX0
-
?
A:
[2-15]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
H
----
T
I
W
E
V
-
I
A
G
L
V
A
L
L
----------
T
F
L
A
F
G
F
W
L
F
K
Y
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
26.61
8%
67
- C8 -
2IFO
-
CAPSD_BPXF
A:
[21-44]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
I
A
A
-
I
G
G
A
V
L
T
V
----------
M
V
G
I
K
V
Y
K
W
V
R
R
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
16.00
0%
825
- C2 -
2ZVK
-
?
U:
[2-9]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
P
R
P
E
---
G
M
-------
Q
-----
T
-----
L
-
E
---
S
-----------------
F
F
K
P
L
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
6.53
25%
616
- C1 -
2LW6
-
?
A:
[28-35]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
N
G
R
H
----
W
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------