@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0024: (2015-12-11 )
MIKFVRNVVLFILTAIFLAFMLLVSYCMPHYSVAVISGVEVKRMNENENTPNNKEVKTLARDVYFVQTYDPKDQKSVTVYRNEDTRFGFPFYFKFNSADISALAQSLVNQQVEVQYYGWRINLFNMFPNVIFLKPLKESDEMSKPVFSWILYALLLVGFFISARSVCTLFKGKAH
Atome Classification :
(19 SA)
------------------------------------------------------------------------------------------------------------------------------------------.-........10-----.........20........30..-------------.......40........50........60---------------...-.....70..------......80...--.....90-.---...-....100.-......110.-......120....----------------...130.......140....------...150----.......---.---160.......-.170...-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------M-
I
K
F
V
R
N
V
V
L
------
F
I
L
T
A
I
F
L
A
F
M
L
L
V
S
Y
CMPH-
Y
S
-------------
V
A
V
I
S
G
V
E
V
K
RMNENENTP
N
N
K
E
V
K
T
L
A
R---------------
D
V
Y
-
F
V
QTYDPKD------Q
K
S
V
T
V
Y
RNED--TRFG
F
P
F
-
Y
---
F
K
F-NS
A
D
I
S
A
L
-
A
Q
S
L
VNQ
Q
V
E
-
V
Q
Y
Y
G
W
R
I
N
L
F
NM----------------FP
N
V
I
F
LKPLKESDEMS
K
P
V
------
F
S
W
I
-
L
----
Y
A
L
L
L
V
G
---
F
---
F
I
-
S
A
R
S
V
C
T
-
L
FKGKAH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
80.51
19%
-80
- C7 -
4NOM
-
LGMN_MOUSE
A:
[26-432]
EDG
G
K
H
W
V
V
I
V
A
GSNGWYNY
R
H
Q
A
D
A
C
H
A
Y
Q
I
I
H
R
N
GIPDEQ
I
I
V
M
M
YDDIANSEENPTPGVVINRPNGTDVYKGVLKDYTGEDVT
P
E
N
F
L
A
V
L
R
GDAEAVKGKGSGKVLKSGPR
D
H
V
F
I
Y
F
T
D
H
G
A
TG
I
L
V
F
PN
D
D
L
H
-
V
K
D
L
N
K
T
I
R
------
Y
M
Y
E
--
H
K
M
Y
Q
K
M
V
F
Y
I
E
A
C
-
E
S
-------------
G
S
M
--------
M
N
H
L
P
D
D
I
N
-------------------------
V
Y
-
A
T
T
A
A
N
P
K
E
------
S
-
S
Y
A
C
Y
Y
D
E
E
RG
T
Y
L
G
D
W
Y
-
S
---
V
N
W
M
E
D
S
D
V
E
D
L
T
K
E
T
L
H
K
Q
Y
H
L
-
V
K
S
H
T
N
T
S
H
V
M
Q
Y
----------------
G
N
K
S
I
S
T
M
K
V
M
Q
F
Q
G
M
K
H
R
A
------
S
S
P
I
S
L
----
P
P
V
T
H
L
D
---
L
---
T
P
-
S
P
D
V
P
L
T
-
I
L
K
R
K
L
L
R
T
ND
V
K
E
S
Q
N
L
I
G
Q
I
Q
Q
F
L
D
A
R
H
V
I
E
K
S
V
H
K
I
V
S
L
L
AGFG
E
T
A
E
R
H
L
SERTMLTA
H
D
C
Y
Q
E
A
V
T
H
F
R
T
HCFNWHSVTYEHALRY
L
Y
V
L
A
N
L
C
E
A
PYP
I
D
R
I
E
M
A
M
D
K
V
CL-----------------------------------------------------------------------
21
Fugue
78.82
18%
-106
- C3 -
4RWR
-
?
A:
[55-323]
------------------------------------------------------------------------------------------------------------------------------VYREKQKKVESL
P
M
E
E
Y
V
T
G
V
V
A
S
E
MNAS
F
E
I
E
A
L
K
A
Q
A
L
A
A
R
T
F
V
V
Q
R
M
L
S
GGKKNNADVTDTD
Q
V
Y
K
S
K
E
E
L
K
K
Q
W
G
N
N
Y
E
N
N
L
K
K
I
E
E
A
V
S
---------------
K
T
A
G
Q
V
L
T
Y
E
G
K
P
ISA
S
F
F
S
T
S
N
G
R
T
E
N
A
A
--
D
Y
W
G
N
D
Y
P
Y
---
L
K
S
-
V
D
S
P
W
D
Q
A
-
S
P
K
F
T
S
E
Q
I
F
T
V
A
D
F
Q
K
R
L
G
V
K
V
L
ADGKVGDIKGRTEGKR
V
K
D
V
A
F
Q
G
K
T
L
T
G
R
D
V
R
D
K
L
ELRSSD
F
T
W
K
-
Q
E
GD
K
I
V
V
T
T
K
G
---
F
GHG
V
G
M
S
Q
Y
G
A
N
G
M
A
A
E
G
K
K
Y
T
D
I
V
A
H
Y
Y
KG
V
E
I
K
T
MNDY------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
76.68
13%
-118
- C4 -
1U0B
1
SYC_ECOLI
B:
[1-461]
-----MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGH
A
-
Y
V
A
D
N
G
D
V
M
------
F
D
V
P
T
------------
D
P
T
-
Y
G
-------------
V
--
L
S
R
Q
D
L
D
Q
L
Q
A
G
A
R
V
D
V
V
D
D
K
R
N
-
P
M
---------------
D
F
V
-
L
W
K
M
S
K
E
G
E
------
P
S
W
P
S
P
W
G
A
-------
G
R
P
G
-
W
---
H
-----
I
E
C
S
A
M
-
N
C
K
Q
L
G
N
H
F
D
-
I
H
G
G
G
S
D
L
-
M
F
P
H
----------------
H
E
N
E
I
A
Q
S
T
C
A
H
D
G
Q
Y
---
V
------
N
Y
W
M
-
H
----
S
G
M
V
M
V
D
---
R
---
E
K
-
M
S
K
S
L
G
N
-
F
F
T
V
R
D
V
LKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
13
Fugue
46.24
20%
40
- C6 -
2LI5
-
ATG7_YEAST
B:
[597-630]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
H
M
------
I
S
G
L
S
V
I
K
Q
E
V
--
E
R
L
G
N
D
--
V
---
F
E
W
-
E
D
D
E
S
D
E
I
-
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
44.31
26%
-31
- C9 -
3LYV
-
RAFY_STRP6
A:
[29-55]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
F
-
F
I
Y
T
D
S
E
D
-------
G
A
T
N
I
L
Y
R
R
E
D
--
G
N
L
G
L
I
E
-
A
---
K
L
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
43.84
22%
-20
- C9 -
3K2T
-
?
A:
[28-54]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
-
Y
V
Y
T
D
A
E
T
-------
N
G
T
N
I
V
Y
S
R
K
D
--
G
K
Y
G
L
I
E
-
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
41.30
42%
36
- C8 -
2FEL
-
?
A:
[293-324]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
F
-
N
A
V
Q
I
S
A
L
-
H
Q
S
L
V
Q
E
Q
-
E
-
R
S
G
A
G
W
M
L
E
W
L
T
L
----------------
P
Q
M
V
T
A
T
G
T
S
L
L
V
A
E
R
L
A
A
Q
------
I
D
R
L
-
G
----
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
41.13
16%
112
- C8 -
2J0Q
1
CASC3_HUMAN
I:
[32-112]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
H
L
D
D
D
E
D
R
K
N
P
A
Y
I
P
R
K
G
L
FFEHDLRGQEGRWEH
D
K
F
-
R
E
D
E
Q
A
P
K
S
------
R
Q
E
L
I
A
L
Y
G
Y
D
--
I
R
S
A
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
40.43
18%
-37
- C8 -
2KNC
-
ITA2B_HUMAN
A:
[960-996]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
R
A
I
P
I
------
W
W
V
L
-
V
----
G
V
L
G
G
L
L
L
L
T
I
---
L
V
-
L
A
M
W
K
V
G
-
F
F
K
R
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
39.50
21%
-15
* C9 *
3KA5
-
?
A:
[26-54]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
---------------
H
N
F
-
F
V
F
Q
N
G
D
S
-------
N
E
V
N
V
V
Y
K
R
K
D
--
G
N
Y
G
L
I
E
-
P
---
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
38.75
42%
43
- C8 -
2FEN
1
?
A:
[293-324]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
F
-
N
A
V
Q
I
S
A
L
-
H
Q
S
L
V
Q
E
Q
-
E
-
R
S
G
A
G
W
M
L
E
W
L
T
L
----------------
P
Q
M
V
T
A
T
G
T
S
L
L
V
A
E
R
L
A
A
Q
------
I
D
R
L
-
G
----
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
38.69
21%
136
- C8 -
1HF9
-
ATIF1_BOVIN
A:
[1-41]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
K
K
H
H
E
N
E
I
S
H
H
A
K
E
I
E
R
L
Q
K
---------------
E
I
E
-
R
H
K
Q
S
I
K
K
L
------
K
Q
S
E
D
D
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
38.58
21%
136
* C8 *
1HF9
-
B:
[1-41]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
K
K
H
H
E
N
E
I
S
H
H
A
K
E
I
E
R
L
Q
K
---------------
E
I
E
-
R
H
K
Q
S
I
K
K
L
------
K
Q
S
E
D
D
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
32.12
8%
210
- C1 -
1E8R
-
A:
[34-46]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
V
T
T
T
--
N
G
W
G
W
E
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
30.13
30%
238
- C8 -
4QMF
-
FAF1_YEAST
A:
[1-20]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
A
E
N
L
Q
N
D
L
E
L
Q
Q
F
L
R
---------------
E
S
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
30.00
13%
101
- C8 -
2ZXX
-
CDT1_MOUSE
C:
[230-267]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
V
K
Q
G
-
V
Q
E
M
M
R
K
R
F
E
-
E
R
N
V
G
---
Q
I
K
T
V
----------------
Y
P
T
S
Y
R
F
R
Q
E
C
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
26.48
10%
37
- C5 -
2QCP
2
CUSF_ECOLI
X:
[32-64]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
V
N
W
P
E
-
M
TMR
F
T
I
-
T
P
Q
T
K
M
S
E
-
I
K
--
T
G
D
K
V
A
-
F
N
F
V
Q
Q
G
N
L
S
L
L
Q
----------------
D
I
K
V
S
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
24.97
7%
-14
- C8 -
1WAZ
-
?
A:
[42-68]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
------
L
D
Y
V
-
L
----
L
P
A
L
A
I
F
---
I
---
G
L
-
T
I
Y
A
I
Q
R
-
K
R
Q
A
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
2.24
0%
480
- C2 -
2K9J
-
?
B:
[714-722]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
W
K
L
L
I
-
T
I
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------