@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0049: (2015-12-12 )
MKTIKNGIMIGTLGALLLSGCSSFDAQRFACLPKDHSSKDASTKKEAQYIPKGFFDPYSSNLNHWDSTF
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40........50--........60........-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKTIKNG
I
M
I
G
T
L
G
A
L
L
L
S
G
CSSFDA
Q
R
F
A
CLPKDHSSKDAST
K
K
E
A
QYIP--KGFFDPYSSNLNHWDSTF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
83.24
34%
-68
- C2 -
1SQJ
-
CBHRE_GEOS1
A:
[4-786]
Y
E
F
K
N
VAIGGGGYIT
G
I
V
A
H
PKTKDL
L
Y
A
R
T
DI
G
G
A
Y
R
W
D
AGTS
K
W
I
P
LNDFIEAQDMNIMGTE
S
I
A
L
D
PNNPD
R
L
Y
L
A
Q
G
R
Y
VGDE
W
A
A
F
Y
V
S
EDRGQ
S
F
T
I
Y
E
S
P
F
P
M
G
ANDMGRNNGER
L
A
V
N
PFNSN
E
V
W
M
GTRTE
G
I
W
K
S
SDRAK
T
W
T
N
VTSIPDAFTNGIGYT
S
V
I
F
DPERNG
T
I
Y
A
S
A
TAPQG
M
Y
V
T
HDGGV
S
W
E
P
VAGQPSSWLNRTTGAFPDKKPASIAPQPM
K
V
A
L
T
PN
F
L
Y
V
T
Y
A
DYPGPWGVT
F
G
E
V
W
R
Q
NRTSG
A
W
D
D
ITPRVGNSSPAPYNNQTFPA
G
G
F
C
GLSVDATNPN
R
L
V
V
I
T
L
DRDPGPA
L
D
S
I
Y
L
S
TDAGATWKD
V
T
Q
L
S
SPSNLEGNWGHPTNAARYKDGTPVPWLDFNNGPQWGGYGAPHGTPGLTKFGWWMSAVLIDPFNPE
H
L
M
Y
G
T
GA
T
I
W
A
T
DTLSRVEKDWAP
S
W
Y
L
QIDG
I
E
E
N
A
I
LS
L
R
S
P
K
S
G
-------
A
A
L
L
S
G
I
G
D
I
S
G
M
K
H
D
D
L
T
K
---------------
P
Q
--
K
M
F
G
A
P
Q
F
S
N
L
D
S
I
D
A
A
G
NFPN
V
V
V
R
A
G
S
S
GHEYDSACARGAYATDGGD
A
W
T
I
FPTCPPGMNASHYQ
G
S
T
I
A
V
D
ASGS
Q
I
V
W
S
TKLDEQAS
G
P
W
Y
S
HDYGK
T
W
S
V
P
A
G
DLKAQTA
N
V
L
S
DKVQDG
T
F
Y
A
T
D
GG
K
F
F
V
S
TDGGK
S
Y
A
A
K
GAGLVTGTS
L
M
P
A
V
NPWVAG
D
V
W
V
P
V
PEG
G
L
F
H
S
TDFGA
S
F
T
R
V
G
TANAT
L
V
S
V
G
A
P
KAPS
A
V
F
I
W
G
TDKPGSDI
G
L
Y
R
S
DDNGS
T
W
T
R
VNDQEHNYSGPT
M
I
E
A
D
PKVYG
R
V
Y
L
G
T
NGR
G
I
V
Y
A
D
L
T
NE
E
K
S
T
A
K
C
ANGQKGTHCY
5
PsiBlast_PDB
67.70
29%
-8
- C4 -
3JWV
3
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
M
L
P
---------
T
K
D
Q
L
F
P
L
A
--
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
67.70
29%
-11
- C4 -
3JWU
3
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
M
L
P
---------
T
K
D
Q
L
F
P
L
A
--
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
67.19
29%
-6
- C4 -
3NLN
3
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
M
L
P
---------
T
K
D
Q
L
F
P
L
A
--
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
66.88
29%
-12
- C4 -
3JWS
3
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
M
L
P
---------
T
K
D
Q
L
F
P
L
A
--
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
66.67
29%
-12
- C4 -
3NLK
3
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
M
L
P
---------
T
K
D
Q
L
F
P
L
A
--
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
66.22
28%
-8
- C4 -
1ZZR
3
NOS1_RAT
A:
[20-76]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
V
L
P
-----------
T
K
D
Q
L
F
P
L
A
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
65.99
29%
-7
- C4 -
3JWT
3
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
M
L
P
---------
T
K
D
Q
L
F
P
L
A
--
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
65.51
28%
-13
- C4 -
3DQR
2
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
V
L
P
-----------
T
K
D
Q
L
F
P
L
A
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
64.41
28%
-19
- C4 -
3N61
3
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
V
L
P
-----------
T
K
D
Q
L
F
P
L
A
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
64.35
28%
-15
- C4 -
3N63
2
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
V
L
P
-----------
T
K
D
Q
L
F
P
L
A
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
64.33
29%
-5
- C4 -
3NLO
4
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
M
L
P
---------
T
K
D
Q
L
F
P
L
A
--
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
64.16
28%
-11
- C4 -
1ZZU
3
NOS1_RAT
A:
[20-76]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
V
L
P
-----------
T
K
D
Q
L
F
P
L
A
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
64.05
28%
-21
- C4 -
3NLQ
4
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
V
L
P
-----------
T
K
D
Q
L
F
P
L
A
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
63.59
28%
-14
- C4 -
3JX3
3
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
V
L
P
-----------
T
K
D
Q
L
F
P
L
A
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
63.34
28%
-12
- C4 -
3NLR
3
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
V
L
P
-----------
T
K
D
Q
L
F
P
L
A
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
62.84
28%
-8
- C4 -
3JX5
3
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
V
L
P
-----------
T
K
D
Q
L
F
P
L
A
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
62.38
28%
-11
- C4 -
3NLP
3
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
V
L
P
-----------
T
K
D
Q
L
F
P
L
A
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
61.43
28%
-13
- C4 -
3JX4
3
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
V
L
P
-----------
T
K
D
Q
L
F
P
L
A
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
61.28
28%
-6
- C4 -
3JX2
3
NOS1_RAT
A:
[22-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
T
L
E
T
G
C
T
E
H
I
C
M
G
S
I
V
L
P
---------
V
R
T
K
D
Q
L
F
P
L
A
K
E
F
L
D
Q
Y
Y
S
S
I
K
R
F
G
S
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------