@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0055: (2015-12-12 )
MFQTKEEWGGFDELEIRYSDKALANTNTLDIKDTQMISIALEEVEEVEVKVCCVDSQSIKVGLFKDGQLIYESEVEKL
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........---------20........30---------..---.......40...-----..----...50.---.......----60.......--.-70.......------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MFQ
T
K
E
EWGGF
D
E
L
E
I
R
YS---------DKALANTNTLD----------IK---D
T
Q
M
I
S
I
A
L
E
E
V
-----
E
E----
V
E
V
K
V
C
---
C
VDSQ
S
I
----
K
V
G
L
FKD
G
Q
--
L
-
I
Y
E
S
E
VEKL------------
5
PsiBlast_PDB
62.21
29%
-34
- C2 -
3ZDT
-
A:
[113-175]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
H
P
P
E
E
W
K
Y
--
E
L
R
I
R
Y
L
---------
P
K
G
F
L
N
Q
F
T
E
D
K
P
T
L
N
F
F
Y
Q
Q
V
K
---
N
D
Y
M
L
E
I
A
D
Q
V
D
-----
Q
E
----
I
A
L
K
L
G
---
C
L
E
I
R
R
S
----
Y
K
K
S
N
Y
E
V
L
--
E
-
K
D
V
G
L
R
R
F
F
------------
4
PsiBlast_PDB
62.13
29%
-30
- C2 -
4CYE
-
A:
[83-145]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
H
P
P
E
E
W
K
Y
--
E
L
R
I
R
Y
L
---------
P
K
G
F
L
N
Q
F
T
E
D
K
P
T
L
N
F
F
Y
Q
Q
V
K
---
N
D
Y
M
L
E
I
A
D
Q
V
D
-----
Q
E
----
I
A
L
K
L
G
---
C
L
E
I
R
R
S
----
Y
G
E
M
R
G
N
A
L
--
E
-
K
K
S
N
Y
E
V
L
E
------------
1
PsiBlast_PDB
61.81
29%
-33
- C2 -
2AEH
-
FAK1_CHICK
A:
[113-175]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
H
P
P
E
E
W
K
Y
--
E
L
R
I
R
Y
L
---------
P
K
G
F
L
N
Q
F
T
E
D
K
P
T
L
N
F
F
Y
Q
Q
V
K
---
N
D
Y
M
L
E
I
A
D
Q
V
D
-----
Q
E
----
I
A
L
K
L
G
---
C
L
E
I
R
R
S
----
Y
G
E
M
R
G
N
A
L
--
E
-
K
K
S
N
Y
E
V
L
E
------------
21
Fugue
59.40
28%
5
- C5 -
3WAJ
2
?
A:
[15-868]
SV
L
V
I
A
A
L
I
S
V
K
L
R
ILNP
W
N
S
V
F
TWTVRLGGN
D
P
W
Y
Y
Y
R
L
I
E
N
T
I
H
N
FPHRIWFDPFTYYP
Y
G
S
Y
T
HFG
P
F
L
V
Y
L
G
S
I
A
G
I
I
F
SATSG
E
S
L
R
A
V
L
A
F
I
P
A
I
G
G
V
L
A
I
L
P
V
Y
L
L
T
R
E
V
FD
K
R
A
A
V
I
A
A
F
L
I
A
I
VPG
Q
F
L
Q
R
S
ILGFNDH
H
I
W
E
A
F
W
Q
V
S
A
L
G
T
F
L
L
A
Y
N
RWKGHDLT
A
R
Q
M
A
Y
P
V
I
A
G
I
T
I
G
L
Y
V
L
S
WGAGF
I
I
A
P
I
I
L
A
F
M
F
F
A
F
V
L
AGFVNAD
R
K
N
L
S
L
V
A
V
V
T
F
A
V
S
A
L
I
Y
LPFAFNYPGFSTIFYSP
F
Q
L
L
V
L
L
G
S
A
V
I
A
A
A
F
Y
Q
I
E
K
W
N
D
V
G
F
F
E
R
V
GLGRK
G
M
P
L
A
V
I
V
L
T
A
L
I
M
G
L
F
F
VLT
N
A
V
L
H
FGA
L
F
F
F
G
M
A
G
I
L
Y
S
A
Y
R
F
L
KRRS
F
P
E
M
A
L
L
I
W
A
I
A
M
F
I
A
L
WGQNRFAYYF
A
A
V
S
A
V
Y
S
A
L
A
L
S
V
V
F
D
K
L
HFRVA
F
A
L
L
I
A
L
A
A
IY
P
T
Y
I
L
A
D
A
Q
S
S
Y
AGGPN
K
Q
W
Y
D
A
L
T
W
M
R
E
N
TPD
G
E
K
Y
D
E
Y
Y
L
QLYPTPQSNKEPFSYPFE
T
Y
G
V
I
S
W
WDY
G
H
W
I
E
A
V
AHRMPIANPFQAGIGNKYNNVPG
A
S
S
F
F
T
AEN
E
S
Y
A
E
F
V
A
E
K
L
NVK
Y
V
V
S
D
IEMETGK
Y
Y
A
M
A
V
W
A
E
GD
L
P
L
A
E
KY
Y
G
G
Y
F
Y
Y
S
PTG
T
F
G
Y
A
NSQWDIPLNSIIIP
L
R
I
P
S
E
L
Y
Y
S
T
M
E
A
K
L
HLFDGSGLSHYRMIYESDYP
A
E
W
K
S
Y
S
S
QVNLNN
E
S
Q
V
L
Q
T
A
L
Y
E
A
V
M
R
A
RYGVSPT
M
G
T
Q
E
V
L
Y
K
Y
A
Y
T
Q
LYEKKM
G
I
P
V
K
IAPSGY
V
K
I
F
E
R
V
K
G
A
V
V
T
G
K
V
S
A
NVT
E
V
S
V
N
A
T
I
K
T
NQN
R
T
F
E
Y
W
Q
T
V
E
V
K
N
G
T
Y
T
V
V
L
P
Y
S
---------
H
N
S
-----------------------------------------------
D
Y
P
V
K
---
P
I
T
P
Y
H
I
----
K
A
G
N
V
V
K
E
I
--
T
-
I
Y
E
S
Q
V
Q
N
G
E
I
I
Q
L
D
L-----
6
PsiBlast_PDB
58.45
30%
-32
- C2 -
2J0K
-
FAK1_CHICK
A:
[85-145]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
P
P
E
E
W
K
Y
--
E
L
R
I
R
Y
L
---------
P
K
G
F
L
N
Q
F
T
E
D
K
P
T
L
N
F
F
Y
Q
Q
V
K
---
N
D
Y
M
L
E
I
A
D
Q
V
D
-----
Q
E
----
I
A
L
K
L
G
---
C
L
E
I
R
R
S
----
Y
G
E
M
R
G
N
A
L
--
E
-
K
K
S
N
Y
E
V
L
E
------------
3
PsiBlast_PDB
58.15
29%
-26
- C2 -
2AL6
-
FAK1_CHICK
A:
[113-175]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
H
P
P
E
E
W
K
Y
--
E
L
R
I
R
Y
L
---------
P
K
G
F
L
N
Q
F
T
E
D
K
P
T
L
N
F
F
Y
Q
Q
V
K
---
N
D
Y
M
L
E
I
A
D
Q
V
D
-----
Q
E
----
I
A
L
K
L
G
---
C
L
E
I
R
R
S
----
Y
G
E
M
R
G
N
A
L
--
E
-
K
K
S
N
Y
E
V
L
E
------------
2
PsiBlast_PDB
56.48
29%
-26
- C2 -
2J0M
-
FAK1_CHICK
A:
[85-147]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
H
P
P
E
E
W
K
Y
--
E
L
R
I
R
Y
L
---------
P
K
G
F
L
N
Q
F
T
E
D
K
P
T
L
N
F
F
Y
Q
Q
V
K
---
N
D
Y
M
L
E
I
A
D
Q
V
D
-----
Q
E
----
I
A
L
K
L
G
---
C
L
E
I
R
R
S
----
Y
G
E
M
R
G
N
A
L
--
E
-
K
K
S
N
Y
E
V
L
E
------------
8
PsiBlast_PDB
56.43
30%
-21
- C2 -
2J0J
-
FAK1_CHICK
A:
[85-145]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
P
P
E
E
W
K
Y
--
E
L
R
I
R
Y
L
---------
P
K
G
F
L
N
Q
F
T
E
D
K
P
T
L
N
F
F
Y
Q
Q
V
K
---
N
D
Y
M
L
E
I
A
D
Q
V
D
-----
Q
E
----
I
A
L
K
L
G
---
C
L
E
I
R
R
S
----
Y
G
E
M
R
G
N
A
L
--
E
-
K
K
S
N
Y
E
V
L
E
------------
29
Fugue
49.14
10%
-19
* C4 *
1I50
-
RPB11_YEAST
K:
[1-114]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNAPDRFELFLLGEGESKL
K
I
D
P
D
T
K
A
P
N
A
V
V
I
T
F
E
K
E
---------
D
H
T
L
G
N
L
I
R
A
E
----------
L
L
---
N
D
R
K
V
L
F
A
A
Y
K
V
EHPFF
A
R
----
F
K
L
R
I
Q
---
T
T
E
G
Y
D
P
----
K
D
A
L
K
N
A
C
N
--
S
-
I
I
N
K
L
G
A
L
K
TNFETEWNLQTL
24
Fugue
47.72
12%
-24
- C4 -
2V3S
2
OXSR1_HUMAN
A:
[1-96]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GP
I
S
L
V
L
R
L
R
N
S
K
K
E
L
N
D
I
R
F
E
F
T
P
GRDT
A
E
G
V
S
Q
E
L
I
S
A
G
L
V
D
----------
G
R
---
D
L
V
I
V
A
A
N
L
Q
K
I
-----
V
E
E
P
QS
N
R
S
V
T
F
---
K
L
A
S
G
V
E
----
G
S
D
I
P
D
D
G
K
--
L
-
I
G
F
A
Q
L
S
I
S
------------
18
HHSearch
44.86
13%
-119
- C7 -
2JPP
1
?
A:
[16-47]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
----
I
T
I
T
I
L
---
G
V
S
G
Q
Q
V
----
R
I
G
I
N
A
P
K
D
--
V
A
V
H
R
E
E
I
Y
Q
R
------------
7
PsiBlast_PDB
44.25
29%
-8
- C2 -
3AGF
-
GLSA1_BACSU
A:
[170-216]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
W
E
T
A
H
R
---------
N
R
A
L
A
Y
Y
--------------
L
K
---
E
T
N
F
L
E
A
E
V
E
E
T
-----
L
E
----
V
Y
L
K
Q
C
---
A
M
E
S
T
T
E
----
D
I
A
L
I
G
L
I
L
--
A
-
H
D
G
Y
H
P
I
R
H
------------
22
Fugue
42.71
16%
-3
- C6 -
2JTM
-
CREN7_SULSO
A:
[1-60]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
S
G
K
K
P
V
K
V
K
----------
T
P
---
A
G
K
E
A
E
L
V
P
E
K
V
-----
W
A
----
L
A
P
K
-------
G
R
K
G
V
----
K
I
G
L
F
K
D
P
E
TG
K
-
Y
F
R
H
K
L
P
D
D
YPI---------
26
Fugue
41.22
18%
-38
* C2 *
5ABX
4
?
B:
[1-41]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
H
M
I
R
Y
N
---------
R
D
T
L
M
T
A
R
D
A
P
----------
I
P
---
D
E
M
L
Q
E
I
N
R
V
A
P
-----
D
I
----
L
I
A
---------------------------------------------------
16
HHSearch
41.21
13%
-23
* C6 *
3LQM
3
I10R2_HUMAN
A:
[134-186]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Y
N
V
Q
Y
W
---------
K
Q
G
T
D
E
K
F
Q
I
T
----------
P
Q
---
Y
D
F
E
V
L
R
N
L
E
P
W
-----
T
T
----
Y
C
V
Q
V
R
---
G
F
L
P
D
R
N
----
K
A
G
E
W
S
E
P
V
--
C
-
E
Q
T
T
H
D
E
T
V
------------
28
Fugue
38.97
15%
34
- C4 -
2KMC
-
FERM1_MOUSE
A:
[-5-96]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
M
L
S
S
G
D
L
T
S
A
S
W
E
L
V
V
R
V
D
---------
H
A
N
G
E
Q
Q
T
E
I
T
----------
L
R
V
SG
D
L
H
I
G
G
V
M
L
K
L
V
-----
E
Q
----
M
N
I
A
Q
D
---
W
S
D
Y
A
L
W
WEQK
R
C
W
L
L
K
T
H
W
--
T
-
L
D
K
C
G
V
Q
A
D
A
N
L
L
F
T
P
QHKM-
14
HHSearch
36.54
16%
-48
* C7 *
1A3Q
-
NFKB2_HUMAN
A:
[182-232]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
S
N
L
K
----------
I
S
---
R
M
D
K
T
A
G
S
V
R
G
G
-----
D
E
----
V
Y
L
L
C
D
---
K
V
Q
K
D
D
I
----
E
V
R
F
Y
E
D
D
E
--
N
-
G
W
Q
A
F
G
D
F
S
------------
11
HHSearch
35.81
24%
-15
- C3 -
1SAZ
-
BUK2_THEMA
A:
[10-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
T
S
T
----
K
L
S
I
F
E
D
E
R
--
M
-
V
K
M
Q
N
F
S
H
S
------------
9
PsiBlast_PDB
34.10
29%
1
- C2 -
1US7
-
CDC37_HUMAN
B:
[290-339]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
L
D
P
V
E
V
-
Y
E
---------
S
L
P
E
E
L
Q
K
C
--------------------
M
L
Q
D
A
I
S
K
M
-----
D
P
----
T
D
A
K
Y
H
M
Q
R
C
I
D
S
-----------------------------------------
12
HHSearch
33.70
11%
-31
- C1 -
2L7Q
-
?
A:
[78-95]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
F
R
L
Y
Y
T
---------
S
Q
S
D
K
E
A
Q
T
I
D
----------
L
Y
---
F
E
D
N
W
G
N
L
Q
Q
L
T
-----
Y
D
----
F
N
G
K
L
E
---
H
H
H
H
H
H
---------------------------------------