@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0069: (2015-12-12 )
MLNTTQKSLLVFMGVFFLIFGVDQAIKHAILEGFHYESLVIDIVLVFNKGVAFSLLSFLEGGLKYLQILLILGLFIFLMRQKELFKSHAIEFGMVFGAGVSNVLDRFVHGGVVDYVYYHYGFDFAIFNFADVMIDVGVGVLLLRQFFFKQKQNKIKGIITLFK
Atome Classification :
(15 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-...10.........20..-..-....30.-...----....40.....-----------...-50....--....60........----70..-----.....-.80......---------..90........100...--....110.......120-------........130...-..----..140-------....-------...150.......160.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLN
T
T
Q
-
K
S
L
L
-
V
F
M
G
V
F
F
L
I
F
G
V
D
-
Q
A
-
I
K
H
A
I
L
E-GFH----
Y
E
S
L
V
I
D
I
V
L
V
-----------FNK-
G
V
A
F
S
L
--
L
S
F
L
E
G
G
L
K
Y
L
Q
I
L
----
L
I
L
G
-----
L
F
I
F
L
-
M
R
Q
K
E
L
F
K
S
---------
H
A
I
E
F
G
M
V
FGA
G
V
S
N
V
L
D
--
R
F
V
HG
G
V
V
D
Y
V
Y
Y
HYG--------F
D
F
A
I
F
N
F
A
D
V
M
I
D
-
V
G
----
V
G
V
L
L
-------
L
R
Q
F
-------
F
F
K
Q
K
Q
N
K
I
K
G
I
I
TLFK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
91.64
20%
-175
- C4 -
2HG4
2
ERYA3_SACER
A:
[9-901]
EE
K
L
R
R
Y
L
K
R
T
V
T
E
L
D
S
V
T
A
R
L
R
E
V
E
H
R
A
G
EPIAIV
G
M
A
C
R
F
P
GDVDS
P
E
S
F
W
E
F
V
S
G
GGDAIAEAPADRGWEPDP
D
A
R
L
G
GMLAAAGDFDAGFFGIS
P
R
E
A
L
A
MD
P
Q
Q
R
I
M
L
E
I
S
W
E
A
L
E
R
A
GHDPVSLRGSA
T
G
V
F
T
G
V
G
T
VDYGPRPDEAPDEVLGY
V
G
T
G
T
A
S
S
V
A
S
G
R
V
A
Y
C
L
GLE
G
P
A
M
T
V
D
TACS
S
G
L
T
A
L
H
L
A
M
E
S
L
R
R
DECG
L
A
L
A
G
G
V
T
V
MSSP
G
A
F
T
E
F
R
S
Q
GGLAADGRCKPFSKAAD
G
F
G
L
A
E
G
A
G
V
L
VLQR
L
S
A
A
R
R
E
GRPVLAVLR
G
S
A
V
N
Q
DGASNGLTAPS
G
P
A
Q
Q
R
V
I
R
R
A
L
E
N
A
GVRAGDVDYVEAHGTGTRLG
D
P
I
E
V
H
A
L
L
S
T
YGAERDPD
D
P
L
W
I
G
S
VKSNIGHTQAA
A
G
V
A
G
V
M
K
A
V
L
A
L
R
H
GEMPRTLHFDEPSPQIEWAVSVVS
Q
A
R
S
W
P
AGERP
R
R
A
G
V
S
S
F
G
ISG
T
N
A
H
V
I
V
E
E
A
PEADG
P
V
P
L
V
L
SGRD
E
Q
A
M
R
A
Q
A
G
R
L
A
D
H
L
A
R
E
PRNS
L
R
D
T
G
F
T
L
A
TR
R
S
A
W
E
H
R
A
V
V
V
G
D
R
D
E
A
L
A
G
L
R
A
V
A
D
G
R
I
A
D
R
T
A
T
G
Q
A
R
T
R
-
R
G
V
A
M
V
F
P
G
-----
Q
G
A
Q
W
Q
G
M
A
R
D
L
L
R
E
-
S
Q
V
----
F
A
D
S
I
R
D
C
E
R
A
-----------
L
A
P
-
H
V
D
W
S
L
--
T
D
L
L
S
G
A
R
P
L
D
R
V
D
----
V
V
Q
P
-----
A
L
F
A
V
M
V
S
L
A
A
L
W
R
S
---------
H
G
V
E
P
A
A
V
V
G
H
S
Q
G
E
I
A
A
--
A
H
V
A
G
A
-----------------------
L
T
L
E
D
A
A
K
L
-
V
A
----
V
R
S
R
V
-------
L
R
R
L
GGQ
G
G
M
A
S
F
G
L
G
T
E
Q
A
A
E
R
I
G
R
F
A
GALSIASVNGPR
S
V
V
V
A
GES
G
P
L
D
E
L
I
A
E
C
E
A
E
AHK
A
R
R
I
PVDYASHSPQVESL
R
E
E
L
L
T
E
LAG
I
S
P
V
SADVALYSTTTGQPIDTATMD
T
A
Y
W
Y
A
N
L
R
EQVR
F
Q
D
A
T
R
Q
L
A
E
A
GFDAFVEVSPHPVL
T
V
G
I
E
A
T
L
D
S
A
LPADA
G
A
C
V
V
G
T
L
RRDRGG
L
A
D
F
H
T
A
L
G
E
A
Y
A
Q
GVEVDWSPAFAD
A
R
P
V
E
L
P
V
Y
PFQ
R
Q
R
Y
W
L
P
I
9
Fugue
89.06
17%
-166
- C4 -
1QVA
-
IF4A_YEAST
A:
[11-223]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
Q
T
N
Y
-
Q
K
V
V
-
Y
K
----
F
D
D
M
E
L
D
-
E
Q
-
L
L
R
G
V
F
G
Y
G
F
E
EPS
A
I
Q
Q
R
A
I
M
P
I
I
E
G
H
D
V
L
A
Q
A
Q
S
G
T
G
K
-
T
G
T
F
S
I
A
A
L
Q
R
I
D
T
S
V
K
A
P
Q
A
L
----
M
L
A
P
-----
T
R
E
L
A
-
L
Q
I
Q
K
V
V
M
A
L
A
F
HMD
I
K
V
H
A
C
I
G
G
T
S
F
V
E
D
A
E
G
L
R
D
--
A
Q
I
V
V
G
T
P
G
R
V
F
D
N
I
Q
R
RRFRTDK
I
K
M
F
I
L
D
E
A
D
E
M
L
S
-
S
G
F
K
E
Q
I
Y
Q
I
F
T
L
LPPT
T
Q
V
V
L
-------
L
S
A
T
M
P
N
D
V
L
E
V
T
T
K
F
M
RN
P
V
R
I
L
V---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
73.27
18%
-126
- C4 -
4K0D
8
?
A:
[5-147]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
A
S
A
D
-
A
Q
L
E
-
L
I
G
P
R
A
A
A
A
A
S
L
E
-
S
A
-
V
L
H
V
S
L
T
-
A
R
A
----
Y
A
L
T
P
E
P
----------------
A
R
M
D
A
L
Q
A
A
--
L
R
R
L
E
G
A
A
A
R
F
A
A
L
P
K
S
P
E
G
A
A
-----
L
S
G
R
I
-
L
A
A
V
P
P
F
E
K
---------
A
A
V
A
L
G
T
A
V
A
T
G
-----------------------
G
--------
D
D
S
A
I
R
A
R
E
A
T
L
P
P
M
R
E
----
E
L
L
S
L
-------
L
R
T
F
-------
G
A
L
Q
Q
A
H
D
A
G
A
S
H
T
I
L
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
70.54
16%
-127
- C4 -
2SCU
1
SUCD_ECOLI
A:
[1-119]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
L
I
D
K
-
N
T
K
V
-
I
C
Q
G
-----
F
T
G
S
-
Q
G
-
T
F
H
S
E
Q
A
-
I
A
Y
----
G
T
K
M
V
-------------------------
G
G
--
V
T
P
G
K
G
G
T
T
H
L
G
L
P
----
V
F
---------------------
N
---------
T
V
R
E
A
V
A
A
T
G
A
T
A
S
V
I
Y
----------
V
P
A
P
F
C
K
D
S
--------
I
L
E
A
I
D
A
G
I
K
L
I
I
T
-
I
T
----
E
G
I
P
T
-------
L
D
M
L
-------
T
V
K
V
K
L
D
E
A
G
V
R
M
I
G
P
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
68.95
16%
-155
- C4 -
1Q77
-
Y178_AQUAE
A:
[1-138]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
A
M
K
V
L
L
-
V
L
T
D
A
Y
S
---
D
C
E
-
K
A
-
I
T
Y
A
V
N
F
-
S
E
----------------------------
K
L
-
G
A
E
L
D
I
--
L
A
V
L
E
D
V
Y
N
L
E
R
A
N
----
V
T
F
G
-----
L
P
F
P
P
-
E
I
K
E
E
S
K
K
R
---------
I
E
R
R
L
R
E
V
W
E
K
L
T
G
S
T
----------
E
I
P
G
V
E
Y
R
I
G
P-------
L
S
E
E
V
K
K
F
V
E
---
G
-
K
G
----
Y
E
L
V
V
W
A
C----
Y
P
S
A
-------
Y
L
C
K
V
I
D
G
L
N
L
A
S
L
I
V
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
57.87
21%
-168
- C3 -
2KJF
-
CCLA_CARML
A:
[1-60]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
A
Y
G
-----------
I
A
Q
-
G
T
A
E
K
V
--
V
S
L
I
N
A
G
L
T
V
G
S
I
I
----
S
I
L
G
GVTVG
L
S
G
V
F
-
T
A
V
K
A
A
I
A
K
---------
Q
G
I
K
K
A
I
Q
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
30.38
20%
20
- C4 -
3MRA
-
?
?:
[277-301]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
M
L
F
T
M
I
F
V
I
S
-
S
I
-
I
I
T
V
V
V
I
-
N
T
H
----
H
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
27.65
21%
20
* C4 *
1VF5
1
PETM_MASLA
F:
[1-33]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
E
E
M
L
Y
A
---------
A
L
L
S
F
G
L
I
F
V
G
W
G
L
G
V
L
L
--
L
K
I
Q
G
A
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
22.24
17%
-0
- C4 -
3HZQ
-
MSCL_STAAW
A:
[12-35]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
V
---------
L
D
L
A
I
A
V
V
M
G
A
A
F
N
K
I
I
C
--
S
L
V
E
N
I
I
M
P
L
I
G
K
I
F
G
--------
S
V
D
F
A
K
E
W
S
F
W
G
I
K
-
Y
G
----
L
F
I
Q
S
-------
V
I
D
F
-------
I
I
I
A
F
A
L
F
I
F
V
K
I
A
N
T
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
21.45
13%
52
- C4 -
2OAR
-
MSCL_MYCTA
A:
[35-58]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
I
---------
V
D
L
A
V
A
V
V
I
G
T
A
F
T
A
L
V
T
--
K
F
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
12.16
29%
207
- C5 -
1O97
1
ETFA_METME
D:
[292-305]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
S
I
F
T
I
A
K
Y
G
I
V
-
A
D
----
I
F
D
I
E
-------
E
E
L
K
-------
A
Q
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
11.92
38%
193
* C5 *
1EFV
-
ETFA_HUMAN
A:
[286-298]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
P
I
F
Q
V
A
D
Y
G
I
V
-
A
D
----
L
F
K
V
V
-------
P
E
M
T
-------
E
I
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
10.94
31%
183
- C5 -
1EFP
1
ETFA_PARDE
A:
[281-293]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
P
I
F
Q
I
A
D
Y
G
L
V
-
G
D
----
L
F
S
V
V
-------
P
E
L
T
-------
G
K
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
6.93
39%
257
- C1 -
2JSS
-
B:
[34-53]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
N
I
I
T
SG
R
R
T
R
G
K
V
I
D
Y
K
K
T
A
E
E
--------
L
D
K
K
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
6.71
33%
293
- C2 -
2CLY
-
ATP5J_BOVIN
C:
[51-68]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
K
-
A
D
M
N
--------------
T
F
P
N
F
T
F
E
D
P
K
F
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------