@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0160: (2015-12-13 )
MVLFLSIFKKSFNDFLSARMLLINLGPILLSLAFFGAIFYYNGGSIVNYCQTLLPQSLNDYAHSQGFFAGVFAWVFKALVYFLIFWIVILLSLVINIFASIFYTPLVVSYLHQKYYPHVVLEEFGSILFSIKYFLKSLTFMLLFLAVLTPLYFIPFIGVFGVFFSIVPHFLFFKNTMSLDIASMIFNHQSYQNLLKQHRLKHYRFSFFCYLFSLIPFFNFFATLLQTLMLTHYFFIFKEKEC
Atome Classification :
(17 SA)
-------------------------------.........10......---..20.-...-....30......-..40....-----....50.---.......60....---------....70.------......-----.80........90-.----........----100.----.....------------.110.......120--------...----.....--------130.......140---------.......150-....--...160......-------.170..--......180....-....190.-......200.......210-----------...---....220.......---230.......240-------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------
M
V
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F
L
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I
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K
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S
F
N
D
F
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---
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R
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L
-
I
N
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-
G
P
I
L
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L
A
F
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G
A
-
I
F
YYNGG
S
-----
I
V
N
Y
C
Q
T
---
L
L
P
Q
S
L
N
D
Y
AHSQ---------
G
F
F
A
G
V
F
------
A
W
V
F
K
A
-----
L
V
Y
F
L
I
F
W
I
V
I
L
--
L
----
S
L
V
I
N
I
F
A
----
S
I
F
Y
----
T
P
L
V
V
------------
S
Y
L
H
QKYY
P
H
V
V
-
L
--------
E
E
F
----
G
S
I
L
F
--------
S
I
K
Y
F
L
K
S
L
T
F
M
L
---------
L
F
L
A
V
L
T
P
L
Y
-
F
I
P
F
--
I
G
V
F
G
V
F
F
S
I
V
P
-------
H
F
-
L
F
F
--KNTMS
L
D
-
I
A
S
M
I
-FN
H
Q
S
Y
Q
N
-
L
L
K
Q
H
R
L
K
H
Y
R
F
S
F
F
C
Y
L
F
-----------
S
L
I
---
P
F
F
N
F
F
A
T
L
L
Q
T
L
M
---
L
T
H
Y
F
F
I
F
KEKEC-------------------------------------------------------------------------------------------------
18
Fugue
89.40
14%
-179
* C4 *
3RRW
5
TL29_ARATH
A:
[4-258]
-----------------------------L
N
Q
R
R
Q
R
S
E
F
Q
S
K
I
K
I
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S
---
T
T
I
K
A
K
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E
L
-
V
P
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L
L
K
L
A
L
N
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A
M
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A
T
K
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GGANG
S
I
R
F
S
S
E
---
L
S
R
A
E
N
E
G
L
S
D
G
L
---------
S
L
I
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E
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------
K
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SKGGP
I
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A
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--
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----
A
V
K
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T
Y
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A
----
S
A
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C
GG
N
E
E
K
G
------------
N
L
L
Y
T
A
Y
G
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A
G
Q
-
W
--------
G
L
F
----
D
R
N
F
G
--------
R
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A
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E
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R
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---------
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A
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Q
E
M
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K
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--
I
A
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G
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P
R
Q
L
A
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---------
M
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A
F
--
L
G
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D
Q
A
A
-
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-
W
V
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Q
R
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E
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-----------
D
L
I
---
T
A
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Q
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I
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---
F
E
A
Y
T
Y
P
V
------------------------------------------------------------------------------------------------------
15
Fugue
86.83
18%
-162
* C2 *
2CVH
-
RADB_THEKO
A:
[1-220]
----------------------------------
M
L
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T
G
T
K
S
L
D
S
L
L
G
GGF
A
P
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L
-
T
Q
V
Y
G
P
Y
A
S
G
K
T
T
L
A
L
-
Q
T
G
L
L
S
G
K
-----
K
V
A
Y
V
D
T
EGG
F
S
P
E
R
L
V
Q
M
A
E
T
R
---------
G
L
N
------------
P
E
E
A
-----
L
S
R
F
I
L
F
T
P
S
D
F
KE
Q
----
R
R
V
I
G
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----
K
T
V
D
----
S
N
F
A
L
------------
V
V
V
D
S
I
T
A
H
Y
R
A
-
E
--------
E
N
R
----
S
G
L
---------------
I
A
E
L
S
R
Q
L
---------
Q
V
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L
W
I
A
R
K
H
-
N
I
P
V
--
I
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I
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Q
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H
F
D
S
R
T
-------
E
M
-
T
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VA
E
Q
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Y
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-
C
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R
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D
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-
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A
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L
E
R
H
R
F
R
----
P
E
-----------
G
L
M
---
A
Y
F
R
I
T
E
R
G
I
E
D
V
E
-----------------------------------------------------------------------------------------------------------------
3
HHSearch
84.13
16%
-161
* C3 *
3TX3
13
?
A:
[12-247]
---------------------------------
S
G
L
A
Y
I
G
R
G
L
E
L
I
R
T
---
K
G
L
R
R
-
Y
V
V
-
V
P
I
L
T
N
L
I
L
F
S
L
-
A
F
T
W
L
Y
G
E
-----
V
D
Y
W
-------------------------------
E
F
I
L
------
W
P
L
A
V
I
--------
T
I
I
A
L
F
S
F
I
--
F
----
S
T
I
M
H
L
I
A
----
A
P
-
F
----
N
G
L
L
A
------------
E
K
V
E
R
Y
E
S
G
E
S
L
G
D
--------
E
G
F
L
G
L
F
K
D
I
P
R
--------
T
L
K
R
E
M
Q
K
L
M
Y
Y
I
---------
P
R
A
L
G
F
F
L
L
S
L
V
I
P
V
--
I
G
Q
---
V
L
W
Y
I
F
-------
V
C
-
W
M
M
--
S
I
Q
Y
-
L
D
Y
P
F
D
N
H
K
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F
P
R
M
R
S
-
E
L
H
Q
Q
R
S
K
T
L
G
F
G
F
G
V
T
V
L
-----------
T
M
I
---
P
L
I
N
L
I
I
M
P
L
A
V
C
G
---
A
T
S
L
W
V
D
H
Y
R
R
S
A
-------------------------------------------------------------------------------------------------
20
Fugue
72.60
12%
-179
- C2 -
1Z2C
1
DIAP1_MOUSE
B:
[15-375]
-------------------------------
V
L
V
L
F
E
Q
M
L
V
D
M
N
L
N
E
E
---
K
Q
Q
P
L
-
R
E
K
-
D
I
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E
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Q
Y
-
L
H
T
S
S
S
R
S
-----
A
M
M
Y
I
Q
E
---
L
R
S
G
L
R
D
---------------
M
H
L
L
S
C
L
------
E
S
L
R
V
S
-----
L
N
N
N
P
V
S
W
V
Q
T
F
--
G
----
A
E
G
L
A
S
L
L
----
D
I
L
K
----
R
L
H
D
E
------------
K
D
S
R
N
Q
H
E
I
I
R
C
-
L
--------
K
A
F
----
M
N
N
K
F
--------
G
I
K
T
M
L
E
T
E
E
G
I
L
---------
L
L
V
R
A
M
D
P
A
V
-
P
N
M
M
--
I
D
A
A
K
L
L
S
A
L
C
I
LPQPED
M
N
E
-
R
V
L
--
E
A
M
T
E
R
A
-
E
M
D
E
V
-
E
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L
D
-
G
L
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I
A
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G
C
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Q
L
I
N
-----------
A
L
I
TPA
E
E
L
D
F
R
V
H
I
R
S
E
L
M
R
L
G
L
H
Q
V
L
Q
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L
R
E
I
E
N
E
D
M
K
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Q
L
C
V
F
D
E
Q
G
D
E
D
F
F
D
L
K
G
R
L
D
D
I
R
M
E
M
DD
F
G
E
V
F
Q
I
I
L
N
TVKDSKAE
P
H
F
L
S
I
L
Q
H
L
L
LVRNDYEA
R
P
Q
Y
Y
K
L
I
E
E
C
V
S
Q
I
V
LHKNGTDPDF
22
Fugue
71.96
7%
-184
- C4 -
1OMO
2
ALADH_ARCFU
A:
[1-320]
---------------M
E
T
L
I
L
T
Q
E
E
V
E
S
L
I
S
M
D
E
A
M
N
A
V
E
E
A
F
R
L
Y
A
L
---
G
K
A
Q
M
-
P
P
K
-
V
Y
L
E
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E
K
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D
L
R
A
-
M
P
A
H
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M
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Y
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A
G
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V
N
---
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H
P
G
N
P
D
K
G
L
P
T
V
---------
M
A
L
M
I
L
N
S
PETGF
P
L
A
V
M
D
-----
A
T
Y
T
T
S
L
R
T
G
A
A
--
G
----
G
I
A
A
K
Y
L
A
----
R
K
N
S
----
S
V
F
G
F
IGCG
T
Q
A
Y
F
Q
L
E
A
L
R
R
V
F
D
I
G
E
V
K
-
A
Y
D
VR
E
K
A
A
K
K
F
----
V
S
Y
C
E
D
R
GIS
A
S
V
Q
P
A
E
E
A
S
R
C
D
V
L
V
T
T
T
PSRKPV
V
K
A
E
W
V
E
E
G
T
-
H
I
N
A
--
I
G
A
D
G
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G
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Q
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-------
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E
-
I
L
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--
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A
K
I
V
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D
-
D
L
E
Q
A
-
K
H
G
G
E
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N
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-
A
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H
A
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E
V
I
A
GLKDGRESD
E
E
I
---
T
I
F
D
S
T
G
L
A
I
Q
D
V
A
---
V
A
K
V
V
Y
E
N
A
L
S
K
N
V
G
S
K
I
KFF-----------------------------------------------------------------------------------------
2
PsiBlast_PDB
62.26
25%
-160
- C3 -
1VBL
-
?
A:
[305-403]
-----------------------------------------------------------------------------------------------------
N
L
A
D
Y
D
F
Q
Y
---------
A
W
G
V
G
V
F
------
S
Q
I
Y
A
Q
-----
N
N
Y
F
S
F
D
W
D
-
I
D
--
P
----
S
L
I
I
K
V
W
S
KNE
E
S
M
Y
E
----
T
G
T
I
V
------------
D
L
P
N
G
R
R
Y
I
D
L
V
-
A
--------
S
Y
N
----
E
S
N
T
L
--------
Q
L
K
---
K
E
V
T
W
K
P
---------
M
F
Y
H
V
I
H
P
T
P
-
S
V
P
A
--
L
V
K
A
K
A
G
A
G
N
L
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
62.16
9%
-168
- C1 -
3CKJ
5
GPGS_MYCPA
A:
[15-329]
GLRDTRPG
D
T
W
L
ADR
S
W
N
R
P
GWT
V
A
E
L
E
A
A
K
A
G
R
T
I
S
V
V
L
P
A
L
D
E
E
D
T
---
I
G
S
V
I
-
D
S
I
-
S
P
L
V
D
G
L
V
D
--
E
-
L
I
V
L
D
S
G
S
-----
T
D
D
T
E
I
R
---
A
V
A
A
G
A
R
V
V
S
R
E
Q
ALPE
V
P
I
R
P
G
K
G
E
A
L
W
------
R
S
L
A
A
S
-----
R
G
D
I
V
V
F
V
D
S
D
L
--
I
NPHP
M
F
V
P
W
L
V
G
----
P
L
L
T
----
G
D
G
V
H
------------
L
V
K
S
F
Y
R
R
P
G
R
V
-
T
--------
E
L
V
----
A
R
P
L
L
--------
A
A
L
R
P
E
L
G
C
I
L
Q
P
---------
L
G
G
E
Y
A
A
T
R
E
-
L
L
T
S
--
V
P
F
A
P
G
Y
G
V
E
I
G
-------
L
L
-
V
D
T
--
F
D
R
L
G
L
D
-
A
I
A
Q
V
-
N
L
G
V
R
E
H
R
-
N
R
P
L
A
E
L
G
A
M
S
R
Q
V
I
A
T
L
L
-----------
S
R
C
GI-
P
D
S
G
V
G
L
T
Q
F
V
A
D
G
---
P
E
G
Q
S
Y
T
Q
H
T
W
P
V
S
L
A
D
R
P
PMQAIRPR-----------------------------------------------------------------------------------
4
HHSearch
42.48
13%
-81
- C3 -
3TX3
5
?
A:
[133-211]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
R
T
L
K
R
E
M
Q
K
L
---------
M
Y
Y
I
P
R
A
L
G
F
-
F
-
L
L
S
L
V
I
P
---
V
I
G
Q
V
L
-------
W
Y
-
I
F
V
--
C
W
M
M
S
I
Q
-
Y
L
D
Y
P
-
F
D
N
H
K
L
S
F
P
R
M
R
S
E
L
H
Q
Q
R
S
K
T
L
G
F
G
F
G
-----------
V
T
V
---
L
T
M
I
P
L
I
N
L
I
I
M
P
L
---
A
V
C
G
A
T
S
L
W
V
D
H
Y
-------------------------------------------------------------------------------------------------
13
Fugue
28.75
28%
78
- C3 -
1Q90
1
PETL_CHLRE
L:
[1-32]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
L
T
I
--
T
S
Y
V
G
L
L
-
I
G
A
L
V
-
F
T
L
G
I
Y
L
G
-
L
L
K
V
V
K
L
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
25.50
15%
72
- C3 -
1RH5
-
SECE_METJA
B:
[29-62]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
K
D
E
Y
L
A
-
V
A
K
V
T
A
L
G
I
S
L
L
G
I
I
G
Y
I
------------
I
H
V
---
P
A
T
Y
I
K
G
I
L
K
---------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
25.06
52%
161
- C3 -
4AF3
-
D:
[17-41]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
P
L
S
Q
------------
A
I
I
H
Q
Y
Y
H
P
P
N
L
-
L
--------
E
L
F
----
G
T
I
L
P
--------
L
D
L
E
D
I
F
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
24.15
13%
171
- C3 -
3MP7
-
SECE_PYRFU
B:
[26-49]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
A
T
Y
K
R
-
A
A
K
I
T
G
L
G
I
I
L
I
G
L
I
G
M
L
I
-----------
R
I
V
---
G
I
L
I
L
G
G
------------------------------------------------------------------------------------------------------------------------
10
HHSearch
23.22
15%
59
- C3 -
2WWB
-
SC61G_CANFA
B:
[30-65]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
K
E
F
Q
K
-
I
A
M
A
T
A
I
G
F
A
I
M
G
F
I
G
F
F
V
K
L
---------
I
H
I
---
P
I
N
N
I
I
V
G
G
----------------------------------------------------------------------------------------------------------------------
8
HHSearch
23.09
15%
68
- C3 -
2WW9
-
SC61G_YEAST
B:
[44-78]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
E
Y
T
K
-
I
V
K
A
V
G
I
G
F
I
A
V
G
I
I
G
Y
A
I
K
L
---------
I
H
I
---
P
I
R
Y
V
I
V
------------------------------------------------------------------------------------------------------------------------
6
HHSearch
17.88
18%
44
- C3 -
1JB0
-
PSAI_THEEB
I:
[13-34]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
I
---
P
V
V
C
W
L
M
P
T
V
V
M
G
L
---
L
F
L
Y
I
E
G
E
A
-----------------------------------------------------------------------------------------------------
12
HHSearch
16.78
25%
267
- C3 -
2KJG
-
?
A:
[3-18]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
L
E
D
P
E
F
V
K
-
L
-
R
Q
F
K
G
K
V
N
F
N
L
V
M
Q
I
L
D
-----------
E
I
E
---
L
D
L
R
G
S
D
N
I
K
T
S
I
I
---
Y
V
Y
S
S
H
L
D
E
I
R
K
N
-------------------------------------------------------------------------------------------------
5
HHSearch
8.93
8%
82
- C3 -
2WSC
-
PSAI_PEA
I:
[7-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
V
---
P
L
V
G
L
L
F
P
A
V
A
M
A
S
---
L
F
L
H
V
E
K
-------------------------------------------------------------------------------------------------------