@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0175: (2015-12-13 )
MLEKLIERVLFATRWLLAPLCIAMSLVLVVLGYVFMKELWHMLSHLDTISETDLVLSALGLVDLLFMAGLVLMVLLASYESFVSKLDKVDASEITWLKHTDFNALKLKVSLSIVAISAIFLLKRYMSLEDVLSSIPKDTPLSHNPIFWQVVIHLVFVCSALLTAVTNNIAFSQKERH
Atome Classification :
(18 SA)
----------------------------------------------------------------------------------------.........10.....----------...20........-30----........40........50..---......60----.........70---------------.......-..80...------.....90------.........100.......-110......-------.120.......130..-----------------------....--..140.-......150------....------.....160.......170-.....---------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------
M
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---
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-----
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M
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----------------
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-
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Y
E
S
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------
K
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DKVD-------AS
E
I
T
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KHTDF
N
A
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K
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-
S
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I
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A
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A
-------
I
F
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M
S
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E
D
V
-
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-----------------------SIPK--DTPLSH-N
P
I
F
W
Q
V
--------
V
I
H
L
------
V
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C
S
A
L
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T
A
V
TNNIAFS-QKERH---------------------------------------------------------------------------------------------------------------------------
23
Fugue
87.51
18%
-132
- C4 -
4D10
-
CSN7A_HUMAN
G:
[12-219]
----------------------------------------------------------------------------------------
T
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-
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QRNQ
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AN------------------------------------------------------------------------------------------------------------
24
Fugue
71.92
18%
-100
- C6 -
3ES5
-
?
A:
[42-420]
MRLGW
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DTIFPLGLEPNVESIPA
G
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VTSVGDRIQLV
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--
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PDVAPN
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DLLYADGAYE
I
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DF
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PAGTTGYGAQT
V
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GN
T
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PLS
D
A
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SPSK
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KRA
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A
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A
N
S
DAKKFYAD
4
PsiBlast_PDB
71.75
26%
-80
- C7 -
3P03
-
BETP_CORGL
A:
[423-521]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
M
G
I
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--
F
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-
A
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A
-------------------------
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-----------------------
N
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--
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--------
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------
M
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---
A
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D
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I
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L
-
E
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R
E
Q
---------------------------------------------------------------------------------------------------------------------------
18
Fugue
69.00
19%
-114
- C5 -
3DT5
2
Y924_ARCFU
A:
[15-133]
------------------------------------------------------------------------------------------------------------------------
R
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---
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T
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G
T
-
E
I
-----------------------
S
L
P
E
KP
D
W
L
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G
Y
-
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
68.59
26%
-83
- C7 -
4AIN
-
BETP_CORGL
A:
[412-510]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
M
G
I
----------------
I
A
M
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F
--
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A
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-------
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A
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A
A
-------
I
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------
L
S
-----------------------
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--
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D
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N
D
V
I
Y
L
-
E
Y
R
E
Q
---------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
66.36
26%
-75
- C7 -
4LLH
1
BETP_CORGL
A:
[423-521]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
M
G
I
----------------
I
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M
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--
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--------
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---
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Q
---------------------------------------------------------------------------------------------------------------------------
20
Fugue
64.32
17%
-93
- C3 -
4U8U
-
?
M:
[3-224]
---------------------------------------------------------------------------------------T
Y
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KKLG
S
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A
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D
D
CKE
H
E
A
P
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DVPQC
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C
D
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KDCKNGRDEDKEVCSE
V
P
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-
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WQACEE
A
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F
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A
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A
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E
E
E
EHEHHIK
T
F
Q
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R
G
Y
Y
S
F
G
D
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-
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A
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P
--
E
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DRGDDD
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A
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H
---------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
64.17
26%
-66
- C7 -
4C7R
1
BETP_CORGL
A:
[423-521]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
M
G
I
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G
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D
N
A
-
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A
A
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---------------------------------------------------------------------------------------------------------------------------
22
Fugue
63.32
10%
-110
* C6 *
2OC5
4
ALDEC_PROMM
A:
[21-241]
------------------------------------------------------EALPDFTS
D
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-
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D
P
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-------
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---
Y
T
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A
W
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N
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E
E
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M
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1
PsiBlast_PDB
63.31
26%
-71
- C7 -
4DOJ
1
BETP_CORGL
A:
[423-521]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
M
G
I
----------------
I
A
M
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-------
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-
A
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A
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G
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D
N
A
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-----------------------
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--
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A
A
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A
L
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D
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L
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14
HHSearch
48.73
27%
77
- C7 -
3R15
-
?
A:
[24-56]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
H
Y
E
K
F
I
N
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Y
-
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I
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D
K
K
P
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-------
S
I
A
Q
G
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K
A
A
A
L
R
K
-
R
F
-----------------------
I
P
K
K
--
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
38.65
37%
49
* C7 *
1HLL
-
A:
[1-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
S
I
V
H
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C
A
-------
I
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A
-
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-----------------------
Y
N
L
K
--
R
T
P
R
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
33.48
26%
82
- C7 -
2YKR
-
RS18_ECOLI
R:
[51-70]
------------------------------------------------------------------------------------------
Q
R
Q
L
A
R
A
I
K
R
A
R
Y
L
S---------
L
L
P
Y
T
D
R
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
31.76
28%
217
- C7 -
3G9R
3
GCN4_YEAST
A:
[14-31]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
N
W
L
W
Y
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E
E
L
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-
K
R
I
E
N
E
I
K
R
-------
I
K
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
29.16
7%
217
- C7 -
1QLE
-
COX4_PARDE
D:
[14-27]
------------------------------------------------------------------------------------------
Q
A
T
F
A
G
F
I
K
G
A
T
W
V
----------
S
I
L
S
I
A
V
L
V
F
L
A
L
-
A
N
----
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
25.01
21%
364
- C7 -
2YV4
-
?
A:
[317-335]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
R
G
L
G
L
A
V
M
N
R
L
----
S
G
Y
-----------------------------------------------------------------------------------------------------------------------------
8
HHSearch
12.56
9%
480
- C2 -
3IM4
-
C:
[13-23]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
-
E
E
L
A
W
K
I
--------
A
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
8.35
8%
689
- C1 -
1YMM
-
C:
[4-14]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-------
V
H
F
F
K
N
I
V
T
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------