@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0189: (2015-12-13 )
MKKVVFLLLFMLGGLEAHSDYCSDHCEGTPDSRIPPMGFHFSFVHSVKYYLQDPQKRDHKLEKCHKAFDSTLKVNFITKSFKKDCKHAQMALEQAQKETP
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10..---......20...--..--...30.......--.40..------....----..50-.......--..60--........70..--......------80........90........100---------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
K
V
V
F
L
L
L
F
M
LG---GL
E
A
H
S
D
Y
C
S
D--HC--EGTPDSRIPPM
G
--
F
H
F
S
F
------
V
H
S
V
----
K
Y
Y
--LQD
P
Q
KR--
D
H
K
L
--
E
K
C
H
K
A
F
DS
T
L
K
--
V
N
F
I
T
K
------
S
F
K
K
D
C
K
H
A
Q
M
A
L
E
Q
A
QKETP-----------------------------------------------------------
31
Fugue
84.48
16%
-55
- C5 -
1FAZ
-
?
A:
[1-122]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APAD
K
P
Q
V
L
A
S
F
T
QTS
A
S
S
Q
N
A
W
L
A
A
N
R
N
Q
S
A
---
W
A
A
Y
E
F
D
W
S
T
D
--
L
C
--
T
Q
A
P
D
N
---
P
F
G
--
F
P
F
N
T
------
A
C
A
R
----
H
D
F
--
G
Y
R
N
Y
K
A
--
A
G
S
F
--
D
A
N
K
S
R
I
D
S
A
F
Y
--
E
D
M
K
R
V
C
T
G
Y
TG
E
K
N
T
A
C
N
S
T
A
W
T
Y
Y
Q
A
V
K
I
F
G
-----------------------------------------------------------
25
Fugue
81.00
17%
-64
- C5 -
3N4S
2
CSM1_YEAST
A:
[5-116]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
S
E
V
I
K
D
L
Y
E
Y
L
C
---
N
V
R
V
H
K
S
Y
E
D
S
G
L
W
F
--
D
I
S
Q
G
T
D
Y
S
I
M
D
--
Y
K
L
G
F
------
V
T
E
V
----
I
Y
A
--
P
V
L
K
Q
R
S
--
T
E
E
L
--
Y
S
L
Q
S
K
L
P
E
Y
L
F
E
T
L
S
F
P
L
S
------
S
L
N
Q
F
Y
N
K
I
A
K
S
L
N
K
-----------------------------------------------------------------
29
Fugue
77.93
23%
-21
- C5 -
1TBA
-
TAF1_DROME
A:
[11-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
S
I
G
N
G
L
D
L
T
G
--
I
L
F
G
N
------
I
D
S
E
----
G
R
L
--
L
Q
D
D
D
G
E
--
G
R
G
------
G
T
G
F
D
A
E
L
R
--
E
N
I
G
S
L
------
S
---
K
L
G
L
D
S
M
L
L
E
V
I
D
L
K
E
A
-----------------------------------------------------------
24
Fugue
76.89
13%
-76
* C5 *
2NN4
-
YQGQ_BACSU
A:
[1-62]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
--
T
F
Y
D
V
------
Q
Q
L
L
----
K
T
F
GH
I
V
Y
F
G
D
R
--
E
L
E
I
--
E
F
M
L
D
E
L
K
E
L
Y
M
--
N
H
M
I
E
---------
K
E
Q
W
A
R
A
A
A
V
L
R
K
E
L
E
Q
T
------------------------------------------------------------
27
Fugue
76.15
24%
-50
- C5 -
1AZP
2
DN71_SULAC
A:
[1-66]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
K
V
K
F
K
Y
----
K
---
G
E
E
K
E
V
D
--------------
T
S
K
I
K
K
V
W
--
R
V
G
K
---------
M
V
----
S
F
T
--
Y
D
D
N
G
-
K
--
T
G
R
G
--
A
V
S
E
K
D
A
P
------------------------
K
E
L
L
D
M
L
A
R
A
E
R
E
K
K
-----------------------------------------------------------
26
Fugue
72.79
24%
-8
- C4 -
4Z2T
1
?
A:
[11-591]
AETD
V
L
I
V
G
AG
P
A
G
A
M
S
A
T
L
L
A
S
L
G
I
R
S
L
M
I
N
RWRSTSPGPRSHIIN
Q
R
T
M
E
I
L
R
D
I
GL
E
E
S
A
K
S
L
AVPKEYMG
E
H
V
Y
A
TSLAGEEFGRIPAWASH
P
Q
A
H
A
E
H
E
L
A
SP
S
R
Y
C
D
L
P
Q
L
Y
F
E
P
M
V
V
S
E
A
A
L
R
G
A
D
V
R
F
LTEYL
G
H
V
E
D
QD
G
V
T
A
R
L
L
D
HVSG
A
E
Y
E
V
R
A
KYIIGADGAHS
L
V
A
Q
N
A
G
L
P
F
E
GQMGG
S
I
N
I
E
F
S
A
DLSSLCEHRKGD
M
Y
Y
M
FV
A
A
L
R
M
IRPWN
K
W
I
C
V
W
GEITKEE
A
K
K
I
I
H
E
I
I
GTDEI
P
V
E
V
G
P
I
S
T
W
T
I
N
Q
Q
Y
A
VRNTSGR
V
F
C
M
G
DAV
H
R
H
T
PMGGL
G
L
N
T
S
V
Q
D
A
Y
N
L
A
W
K
L
A
L
V
L
K
GTAAPTLLDS
Y
D
A
E
R
S
P
V
A
K
Q
I
V
E
R
A
F
K
S
L
S
T
F
P
P
V
F
E
A
L
SLPPAPT
E
S
E
M
A
E
A
L
V
R
L
K
DAS
E
E
G
A
K
R
R
A
A
L
R
K
A
M
D
A
T
I
I
G
L
G
GGH
G
V
E
L
N
Q
R
Y
V
S
R
--
A
V
FP
D
G
T
P
D
P
G
F
V
R
D
Q
--
E
F
F
Y
Q
A
S
TRPG
A
H
L
P
----
H
V
W
--
L
T
E
N
Q
R
R
--
I
S
T
L
--
D
L
C
G
K
G
-
R
F
T
L
L
--
T
G
L
S
G
A
------
A
W
K
H
E
A
E
Q
V
S
Q
S
L
G
I
E
L
K
V
C
V
IGPGQEFVDTYGEYAKISEIGES
G
A
L
L
V
R
PDMFIAFRAKDAS
R
E
G
L
E
Q
L
N
V
A
V
K
S
I
L
GR
15
HHSearch
72.04
21%
-43
- C5 -
1LG4
-
PRND_HUMAN
A:
[65-119]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
D
--
I
D
F
G
A
-------
E
G
N
----
R
Y
Y
--
E
A
N
Y
W
Q
F
PD
G
I
H
Y
--
N
G
C
S
E
A
---------
N
V
T
K
E
------
A
F
V
T
G
C
I
N
A
T
Q
A
A
N
Q
G
E
F
Q
K
P
-----------------------------------------------------------
16
HHSearch
70.20
23%
-49
- C5 -
1I17
-
PRND_MOUSE
A:
[17-70]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
--
I
D
F
G
A
-------
E
G
N
----
R
Y
Y
--
A
A
N
Y
W
Q
F
PD
G
I
Y
Y
--
E
G
C
S
E
A
---------
N
V
T
K
E
------
M
L
V
T
S
C
V
N
A
T
Q
A
A
N
Q
A
E
F
S
R
E
-----------------------------------------------------------
32
Fugue
61.04
13%
-48
- C5 -
4E40
-
?
A:
[3-247]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GEIKVELED
S
D
D
V
A
A
A
C
E
L
R
A
Q
L
A
G
V
S
I
A
S
G
I
L
L
R
P
A
V
I
R
N
A
T
T
E
F
S
R
K
K
S
E
D
I
L
A
K
G
G
A
A
V
E
R
A
S
A
A
V
D
R
V
SGLDKTN
E
T
A
Q
K
V
R
K
A
A
A
V
A
H
H
A
L
E
H
V
K
E
E
V
E
I
V
A
K
K
V
N
E
I
I
E
L
T
A
G
A
T
E
H
A
K
G
A
K
A
N
G
D
A
S
A
V
K
V
S
N
L
L
A
R
A
K
E
---
S
E
N
Q
Y
V
K
E
A
A
E
--
E
C
--
S
E
S
T
N
Y
D
V
T
A
K
S
--
L
A
A
A
L
------
D
K
-----------
L
P
G
V
K
E
D
--
N
A
V
K
--
T
T
F
Q
S
I
L
T
S
L
D
N
--
L
D
K
D
V
K
------
S
V
E
Q
R
A
E
E
L
E
T
A
L
E
K
A
E
R
Q
L
E
K
A
E
K
A
A
E
E
A
E
T
E
S
S
K
V-------------------------------------------
22
HHSearch
55.89
13%
-37
- C5 -
1XU0
-
?
A:
[136-192]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
M
S
--
Y
Q
F
N
N
------
P
M
E
S
----
R
Y
Y
--
N
D
Y
Y
N
Q
M
--
P
N
R
V
Y
R
P
M
Y
R
G
E
--------
E
Y
V
S
E
D
------
R
F
V
R
D
C
Y
N
M
S
V
T
E
Y
I
I
K
---------------------------------------------------------------
13
HHSearch
52.28
22%
118
- C1 -
2B5B
-
DBTEW_CARCR
A:
[5-13]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
G
R
C
T
L
--
K
C
--
G
K
H
E
R
P
T
L
P
Y
N
C
--
G
K
Y
I
C
------
C
V
P
V
----
K
V
K
---------------------------------------------------------------------------------------------------------------------------
3
HHSearch
48.78
14%
7
- C6 -
3DTZ
-
?
A:
[140-167]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
--
V
A
Y
P
M
------
S
K
T
P
----
D
W
Y
--
L
L
D
F
D
T
R
--
K
E
I
M
--
H
E
H
I
K
M
G
I
R
S
Y
T
--
T
Y
S
F
G
I
------
G
D
Q
E
F
V
V
L
Y
E
I
P
D
I
A
A
W
S
R
V
T
-----------------------------------------------------------
23
HHSearch
48.27
18%
-9
- C3 -
2Z35
-
?
A:
[29-50]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
P
A
L
----
F
W
Y
--
V
Q
Y
P
G
E
G
--
P
Q
F
L
--
F
R
A
S
R
D
K
E
K
G
S
S
--
R
G
F
E
A
T
------
Y
N
K
E
A
T
S
F
H
L
Q
K
A
S
V
Q
E
S
D
S
A
-----------------------------------------------------------
20
HHSearch
45.37
12%
18
* C6 *
3SLG
-
?
A:
[346-369]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
D
A
L
------
R
Q
I
F
----
E
A
Y
--
R
G
H
V
A
D
A
--
R
A
L
V
--
E
---------------------------------------------------------------------------------------------------------
4
HHSearch
45.28
8%
20
- C6 -
3NN1
3
?
A:
[137-162]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
I
V
I
P
I
------
K
K
D
A
----
E
W
W
--
A
L
D
Q
E
A
R
--
T
A
L
M
--
Q
E
H
T
Q
A
A
L
P
Y
L
K
--
T
V
K
R
K
L
------
Y
H
S
T
G
L
D
D
V
D
F
I
T
Y
F
E
T
E
R
L
E
-----------------------------------------------------------
6
HHSearch
45.17
8%
41
- C6 -
1VDH
-
Y1714_THET8
A:
[143-172]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
F
Y
P
M
------
N
K
R
R
QGQD
N
W
Y
--
M
L
P
A
K
E
R
--
A
S
L
M
--
K
A
H
G
E
T
G
R
K
Y
Q
G
--
E
V
M
Q
V
I
------
S
G
A
Q
G
L
D
D
W
E
W
G
V
D
L
F
S
E
D
P
V
-----------------------------------------------------------
5
HHSearch
44.46
10%
8
- C6 -
2VXH
1
?
A:
[145-173]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Y
V
--
I
V
I
P
V
------
K
K
N
A
----
E
W
W
--
N
M
S
P
E
E
R
--
L
K
E
M
--
E
V
H
T
T
P
T
L
A
Y
L
V
--
N
V
K
R
K
L
------
Y
H
S
T
G
L
D
D
T
D
F
I
T
Y
F
E
T
D
D
L
T
-----------------------------------------------------------
7
HHSearch
43.67
10%
3
- C6 -
1T0T
-
Y3416_GEOKA
V:
[135-170]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
K
T
N
YI
C
F
Y
P
M
------
D
K
R
R
QGND
N
W
Y
--
M
L
S
M
E
Q
R
--
R
E
L
M
--
R
A
H
G
M
T
G
R
K
Y
A
G
--
K
V
T
Q
I
I
------
T
G
S
V
G
L
D
D
F
E
W
G
V
T
L
F
S
D
D
A
L
-----------------------------------------------------------
9
HHSearch
42.10
11%
17
- C6 -
3QPI
1
?
A:
[83-110]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
A
--
A
L
I
P
I
------
R
K
S
A
----
A
W
W
--
E
M
T
Q
D
E
R
--
R
A
I
F
--
E
D
K
S
H
H
I
A
A
S
L
K
--
Y
L
P
A
I
A
------
R
Q
L
Y
H
C
R
D
I
G
E
P
F
D
F
L
T
W
F
E
Y
-----------------------------------------------------------
18
HHSearch
19.27
38%
486
- C2 -
2HGO
1
CASSI_CORCC
A:
[13-18]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
F
C
G
D
--
N
C
--
G
N
S
W
A
C
S
G
C
------------------------------------------------------------------------------------------------------------------------------------------------------