@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0351: (2015-12-14 )
MGIKEKEIELETLKREIAQAEASLEQDFIKHMVDKTNEKVEDLFFSNKPEFYRFVFTEQNNYLREKLTDKVGRAMDLIDEIQRDKTENESLENGAKFKKRFVFELQNDLIFLRTKRNTYSAKTEHENFQEKLLAAKDTFRLIKANDFKTKIYPYQIILRLKTKHIIVFKWLKKEIIKRFVKKDLFTETLSIKITDKKGRKYALIANYNHASDIIELMLDDKTYTTTLYYQKPLFDLIKNSNFNLTIKDNTLEINQAKNAYSFKAKNTKTLEY
Atome Classification :
(20 SA)
---------------------------------------------.......--------..10........20.-------.......30........-------40.......---.50---........60.......-.70.....---...80........90..-......100.......110..-----------.------....120-------------.....---..130.......140.....-..------------------150.......160.......170......-------.180-.-----------........190....---------...200.......-210......------.220.--......---230-------........240.......250......------.260.......270-----
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------MGIK
E
K
E
--------
I
E
L
E
T
L
K
R
E
I
A
Q
A
E
A
-------
S
L
E
Q
D
F
I
K
H
M
V
D
KTN
E
K
-------
V
E
D
L
F
FSNK---
P
E
F
---
Y
R
F
V
F
TEQN
N
Y
L
R
E
K
L
T
-
D
K
V
G
R
A
M
D
---
L
I
D
E
I
Q
RDKTENESL
E
N
-
G
A
K
F
K
K
R
F
V
F
ELQN
D
L
I
F
L
R
T-----------K------RNTYSAK-------------TE
H
E
N
---
F
Q
E
K
L
L
A
A
K
D
T
F
R
L
I
KANDF-
K
T
------------------
K
I
Y
P
Y
Q
I
I
L
R
L
KT
K
H
I
I
V
F
K
W
L
K
K
E
I
I
K
R
-------
F
V
---
K
-----------
K
D
LFT
E
T
L
S
I
K
I
TDK---------KG
R
K
Y
A
L
I
ANYN
H
-
A
S
D
I
I
E
L
M
L------DDKT
Y
--
T
T
T
L
Y
Y---QK--------
P
L
F
D
L
IKNSN
F
N
L
T
I
KD
N
T
L
E
I
NQAKN------
A
Y
S
FKAKNTKTLEY-----
29
Fugue
72.25
24%
-13
- C3 -
4XD1
14
?
A:
[21-417]
--M
K
L
I
I
A
G
K
N
N
I
A
V
D
V
T
K
W
I
I
K
T
ISD
I
E
L
Y
S
V
C
N
ENDHGNDSFQ
L
S
F
K
K
F
C
--------
I
Q
F
N
I
P
I
I
S
L
E
D
A
Y
H
LED
A
I
F
L
S
L
E
F
D
K
I
I
H
P
S
K
F
T
H
N
R
-------
I
F
N
I
H
F
S
Y
L
---
P
A
Y
KGM
Y
T
S
A
W
P
I
L
N
N
E
Q
E
S
G
V
T
L
H
K
I
D
H
G
I
D
TGA
I
I
D
Q
Q
K
F
P
L
D
I
E
E
T
A
K
T
L
Y
L
K
Y
I
K
I
G
T
E
I
V
I
K
N
L
P
A
L
I
S
GN
Y
S
I
V
E
Q
SAI
K
------
S
S
Y
Y
S
K
K
SIDYKNLMIDLNK
T
A
H
E
I
---
L
Q
Q
I
R
A
F
T
F
R
D
Y
Q
L
P
R
I
D
D
I
-
D
I
F
H
G
E
I
L
SSKSLSKPGTIL
E
K
N
N
Y
H
L
I
L
S
T
I
D
Y
D
I
K
L
Y
S
D
N
F
D
E
I
L
T
A
C
E
DKS
P
E
F
I
---
S
-----------
K
L
L
K
T
E
N
I
-
L
F
E
K
N
H
---------
L
G
A
S
P
I
I
I
A
A
Y
H
G
-
N
M
D
V
I
E
W
L
V
S
K
GVNI
N
D
R
N
Y
KG
T
T
V
A
M
Y
---
F
K
--------
D
Y
M
L
R
S
G
N
Y
T
G
L
E
N
L
I
N
L
G
L
D
L
F
L
K
D
N
EGLS
V
F
D
Y
M
R
K
N
K
N
I
E
L
F
N
F
M
S
T
FN
34
Fugue
70.24
16%
-36
- C4 -
4CFP
3
MLTC_ECOLI
A:
[15-341]
DTN
G
F
D
I
L
M
G
Q
F
A
H
N
I
E
N
I
WGFKEV
V
I
A
G
PK
D
Y
V
K
Y
T
DQYQ
T
R
S
H
I
N
F
D
D
G
T
--------
I
T
I
E
T
I
A
G
T
--
E
P
A
A
-------
H
L
R
R
A
I
I
K
T
L
L
M
G
D
D
P
S
SVDLYSD
V
D
D
I
T
I
S
K
E
---
P
F
L
---
Y
G
Q
V
V
D
N
T
G
Q
P
I
R
W
------
E
G
R
A
S
N
---
F
A
D
Y
L
L
K
N
R
L
K
S
R
S
--
N
-
G
L
R
I
I
Y
S
V
T
I
N
M
V
P
N
H
L
D
K
R
A
-----------
H
K
Y
L
G
M
V
R
Q
A
S
R
K
Y
-------------
G
V
D
E
S
---
L
I
L
A
I
M
Q
T
Q
S
S
F
N
P
Y
-
A
V
S
R
-
S
D
------------------
A
L
G
L
M
Q
V
V
Q
H
T
A
G
K
D
V
F
R
S
Q
G
K
S
G
T
P
S
R
S
-------
F
L
F
D
P
A
-----------
S
N
I
D
T
G
T
A
Y
L
A
M
L
N
N
VYLGGIDN
P
T
S
R
R
Y
A
V
I
T
A
Y
N
G
G
A
G
S
V
L
R
V
F
S
------
N
D
K
I
Q
--
A
A
N
I
I
N
T
M
T
P
G
--------
D
V
Y
Q
T
L
T
T
R
H
P
S
A
E
S
R
R
Y
L
Y
K
V
N
T
A
Q
K
------
S
Y
R
R
R
--------------
9
PsiBlast_PDB
56.87
32%
66
- C7 -
3ND8
1
VATA_PYRHO
A:
[541-583]
----------------------------------------------
G
V
P
L
E
E
--------
I
A
K
L
P
V
R
E
E
I
G
R
M
K
F
-------
E
R
D
V
S
K
I
R
S
L
I
D
K
T
N
E
Q
-------
F
E
E
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
56.65
32%
75
- C7 -
3MFY
1
VATA_PYRHO
A:
[541-583]
----------------------------------------------
G
V
P
L
E
E
--------
I
A
K
L
P
V
R
E
E
I
G
R
M
K
F
-------
E
R
D
V
S
K
I
R
S
L
I
D
K
T
N
E
Q
-------
F
E
E
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
56.27
32%
70
- C7 -
3SDZ
1
VATA_PYRHO
A:
[541-583]
----------------------------------------------
G
V
P
L
E
E
--------
I
A
K
L
P
V
R
E
E
I
G
R
M
K
F
-------
E
R
D
V
S
K
I
R
S
L
I
D
K
T
N
E
Q
-------
F
E
E
L
F
K
K
Y
G
---
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
56.16
32%
78
- C7 -
3ND9
-
VATA_PYRHO
A:
[541-583]
----------------------------------------------
G
V
P
L
E
E
--------
I
A
K
L
P
V
R
E
E
I
G
R
M
K
F
-------
E
R
D
V
S
K
I
R
S
L
I
D
K
T
N
E
Q
-------
F
E
E
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
55.82
32%
76
- C7 -
3I73
1
VATA_PYRHO
A:
[541-583]
----------------------------------------------
G
V
P
L
E
E
--------
I
A
K
L
P
V
R
E
E
I
G
R
M
K
F
-------
E
R
D
V
S
K
I
R
S
L
I
D
K
T
N
E
Q
-------
F
E
E
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
55.63
32%
70
- C7 -
3QJY
2
VATA_PYRHO
A:
[541-583]
----------------------------------------------
G
V
P
L
E
E
--------
I
A
K
L
P
V
R
E
E
I
G
R
M
K
F
-------
E
R
D
V
S
K
I
R
S
L
I
D
K
T
N
E
Q
-------
F
E
E
L
F
K
K
Y
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
55.63
32%
68
- C7 -
3QIA
3
?
A:
[541-583]
----------------------------------------------
G
V
P
L
E
E
--------
I
A
K
L
P
V
R
E
E
I
G
R
M
K
F
-------
E
R
D
V
S
K
I
R
S
L
I
D
K
T
N
E
Q
-------
F
E
E
L
F
K
K
Y
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
55.52
32%
66
- C7 -
3M4Y
-
VATA_PYRHO
A:
[541-583]
----------------------------------------------
G
V
P
L
E
E
--------
I
A
K
L
P
V
R
E
E
I
G
R
M
K
F
-------
E
R
D
V
S
K
I
R
S
L
I
D
K
T
N
E
Q
-------
F
E
E
L
F
K
K
Y
G
---
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
55.36
32%
68
- C7 -
3IKJ
-
VATA_PYRHO
A:
[541-583]
----------------------------------------------
G
V
P
L
E
E
--------
I
A
K
L
P
V
R
E
E
I
G
R
M
K
F
-------
E
R
D
V
S
K
I
R
S
L
I
D
K
T
N
E
Q
-------
F
E
E
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
55.32
32%
67
- C7 -
1VDZ
-
VATA_PYRHO
A:
[541-583]
----------------------------------------------
G
V
P
L
E
E
--------
I
A
K
L
P
V
R
E
E
I
G
R
M
K
F
-------
E
R
D
V
S
K
I
R
S
L
I
D
K
T
N
E
Q
-------
F
E
E
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
54.61
32%
59
- C7 -
3P20
1
VATA_PYRHO
A:
[541-583]
----------------------------------------------
G
V
P
L
E
E
--------
I
A
K
L
P
V
R
E
E
I
G
R
M
K
F
-------
E
R
D
V
S
K
I
R
S
L
I
D
K
T
N
E
Q
-------
F
E
E
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
54.32
32%
68
- C7 -
3I72
1
VATA_PYRHO
A:
[541-583]
----------------------------------------------
G
V
P
L
E
E
--------
I
A
K
L
P
V
R
E
E
I
G
R
M
K
F
-------
E
R
D
V
S
K
I
R
S
L
I
D
K
T
N
E
Q
-------
F
E
E
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
53.91
32%
68
- C7 -
3QG1
1
A:
[541-583]
----------------------------------------------
G
V
P
L
E
E
--------
I
A
K
L
P
V
R
E
E
I
G
R
M
K
F
-------
E
R
D
V
S
K
I
R
S
L
I
D
K
T
N
E
Q
-------
F
E
E
L
F
K
K
Y
G
---
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
53.82
32%
69
- C7 -
3SE0
1
VATA_PYRHO
A:
[541-583]
----------------------------------------------
G
V
P
L
E
E
--------
I
A
K
L
P
V
R
E
E
I
G
R
M
K
F
-------
E
R
D
V
S
K
I
R
S
L
I
D
K
T
N
E
Q
-------
F
E
E
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
53.44
32%
74
- C7 -
3I4L
1
VATA_PYRHO
A:
[541-583]
----------------------------------------------
G
V
P
L
E
E
--------
I
A
K
L
P
V
R
E
E
I
G
R
M
K
F
-------
E
R
D
V
S
K
I
R
S
L
I
D
K
T
N
E
Q
-------
F
E
E
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
51.54
13%
13
* C6 *
4QTZ
-
?
A:
[1-321]
---------------LG
N
V
V
C
V
T
GASG
Y
I
A
S
W
L
V
R
L
L
L
H
R
GYTVK
A
T
V
R
D
P
N
DPKKV
D
H
L
V
K
L
D
G
A
K
E
R
L
Q
L
F
K
A
-------
N
L
L
E
E
---
G
A
F
D
S
V
V
Q
G
-------
C
H
G
V
F
H
T
A
S
---
P
F
Y
---
H
-----
D
V
K
D
P
Q
A
E
L
I
D
-
P
A
L
K
G
T
L
N
---
V
L
N
S
C
A
K
S
P
S
L
K
R
V
V
L
T
-
S
S
I
A
A
V
A
Y
N
G
K
P
R
T
P
D
V
V
V
D
E
-----------
T
------
W
F
T
D
A
D
F
-------------
C
A
K
S
N
L
W
Y
V
V
S
K
T
L
A
E
E
A
A
W
K
F
V
K
E
N
N
I
D
M
V
------------------
T
I
N
P
A
M
V
I
G
P
L
L
Q
P
V
L
N
T
S
A
A
A
I
L
N
L
I
N
G
-------
A
Q
---
T
FPN
A
S
F
G
W
V
N
V
K
D
V
A
N
A
H
I
L
A
Y
E
N
A
S
---------
A
S
G
R
H
C
L
V
E
R
V
A
H
-
Y
S
E
V
V
R
I
L
R
------
E
L
--
Y
--
P
S
L
Q
L
P
---
E
K
CADDKPYV
P
I
Y
Q
V
S
K
E
K
A
K
S
L
G
L
E
Y
T
P
L
E
V
S
I
K
E
T
------
V
E
S
L
K
E
K
K
F
A
N
L
-------
38
Fugue
48.02
13%
15
- C6 -
1K4I
4
RIB3_MAGO7
A:
[12-227]
--------------------------------------------------------------
F
D
A
I
P
D
V
I
Q
A
F
K
N
-------
G
---
E
F
V
V
V
L
D
D
P
S
R
E
N
-------
E
A
D
L
I
I
A
A
E
SVT
T
E
Q
---
M
A
F
M
V
R
H
S
S
G
L
I
C
A
P
L
T
-
P
E
R
T
T
A
L
D
---
L
P
Q
M
V
T
H
N
A
D
P
R
G
T
-------------------------------------------
A
Y
T
V
S
V
D
-------------
A
E
H
P
S
---
T
T
T
G
I
S
A
H
D
R
A
L
A
C
R
M
L
A
A
P
-
D
A
------------------
Q
P
S
H
-----
F
R
R
P
G
H
V
F
P
L
R
A
V
A
G
G
V
R
A
R
----------------------------------
R
G
H
T
E
---------
A
G
V
E
L
C
R
L
A
G
K
R
P
-
V
A
V
I
S
E
I
V
D
------
D
G
Q
E
V
--
E
G
R
A
V
R
---
A
A
--------
P
--
G
M
L
R
G
D
E
C
V
A
F
A
R
R
W
G
L
K
V
C
T
I
E
D
------
M
I
A
H
V
E
K
T
E
G
K
L
-------
16
PsiBlast_PDB
47.77
43%
91
- C7 -
1DG3
-
GBP1_HUMAN
A:
[485-516]
------------------------------------------------
K
E
K
E
--------
I
E
V
E
R
V
K
A
E
S
A
Q
A
S
A
-------
K
M
-----
L
H
E
M
Q
R
K
N
E
Q
-------
M
M
E
Q
K
E
R
S
Y
---
Q
E
H
---
L
K
Q
L
T
E
K
M
E
N
D
R
V
Q
L
L
K
-
E
Q
E
R
T
L
A
L
---
K
L
Q
E
Q
E
Q
L
L
K
E
G
F
Q
K
E
S
-
R
I
M
K
N
E
I
Q
D
L
Q
T
K
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------