@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0477: (2015-12-15 )
MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTSLDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNEQIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIFDDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIKDKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130...--....140.......150.......160..---....-------.170.......180......--.190..---.....200.......-210..-.....220-.......230.......240.......250.......260.......270........280.......290.......300.......310.......320.......330.......340-........350.......360.......370.......380.......390.......400......----.410.......420.......430----....----...440...-....450.......460.......470.......480.......490..---.....500.......510.......520
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
G
Q
A
F
F
K
K
I
V
G
C
F
C
L
G
Y
L
F
L
S
S
A
I
E
A
V
A
L
D
I
KNFNRG
R
V
K
V
V
N
K
K
I
A
YLGDEK
P
I
T
I
W
TSLD
N
V
T
V
I
Q
LEKDE
T
I
S
Y
I
TTGFNK
G
W
S
IVPNS
N
H
I
F
I
QPKSVKSN
L
M
F
E
K
EAV
N
F
A
L
M
T
R
D
Y
Q
E
F
L
K
TK
K
L
I
VDA--P
D
P
K
E
L
E
E
Q
K
K
A
L
E
K
E
K
E
A
K
E
Q
A
Q
K
A
Q
K
D
---
K
R
E
K
-------
R
K
E
E
R
A
KNRA
N
L
E
N
L
T
N
A
MS--NPQNLS---NNK
N
L
S
E
L
I
K
Q
Q
R
E
N
-
E
L
D
Q
M
-
E
R
L
E
D
M
Q
E
-
Q
A
Q
A
N
A
L
K
Q
I
E
E
L
N
K
K
Q
A
E
E
A
V
R
Q
RAKD
K
I
S
I
KTDKSQKSPEDN
S
I
E
L-SPSDSA
W
R
T
N
L
V
V
RT
N
K
A
L
Y
Q
F
I
L
R
I
AQKDNF
A
S
A
Y
L
T
V
K
L
EYPQR
H
E
V
S
S
V
I
E
E
E
L
K
K
R
E
E
A
K
R
Q
R
E
L
I
K
--QENL
N
T
T
A
Y
I
N
R
V
MMASN
E
Q
II
N
K
E
K
I
R
E
E
K
Q
K
I
I
L
D
Q
A
K
A
L
E
T
Q
Y
V
H
N
A
L
KRNPVPRNYNYYQAPE----KRSKHIM
P
S
E
IFDDG
T
F
T
Y
F
GFKN----
I
T
LQ----
P
A
I
F
V
VQPD-G
K
L
SMTDAAIDPNMTNSG
L
R
W
Y
R
V
N
E
I
A
E
K
F
K
L
I
KD
K
A
L
V
T
V
I
NKGYGK---NPLTKNYNIK
N
Y
G
E
L
E
R
V
I
K
KLPLVRDK
21
HHSearch
78.44
19%
-21
- C4 -
3JQO
-
?
B:
[17-131]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
A
G
A
K
N
Y
Q
Y
V
M
S
E
Q
----
P
E
M
R
S
I
Q
P
V
H
V
W
D
N
Y
R
F
T
R
F
E
F
P
A
----
N
A
E
L
----
P
Q
V
Y
M
I
S
A
S
-
G
K
E
T
L
P
N
S
H
V
V
G
E
--
N
R
--
N
I
I
E
V
E
T
V
A
K
E
W
R
I
R
L
G
D
K
V
V
G
V
R
N
N
N
F
A
P
GRG
A
V
A
T
G
T
A
----
S
P
D
V
R
R
V
Q
I
--------
30
Fugue
78.27
18%
-27
* C4 *
2OFQ
1
?
A:
[1-95]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
A
K
N
Y
Q
Y
V
M
S
E
Q
----
P
E
M
R
S
I
Q
P
V
H
V
W
D
N
Y
R
F
T
R
F
E
F
P
A
----
N
A
E
L
----
P
Q
V
Y
M
I
S
A
S
-
G
K
E
T
L
P
N
----
S
H
V
V
G
E
N
R
N
I
I
E
V
E
T
V
A
K
E
W
R
I
R
L
G
D
K
V
V
G
V
R
N
N
N
F
A
P
-------------------------------
31
Fugue
76.33
18%
80
- C3 -
1D7M
-
CTXA_DICDI
A:
[243-343]
-----------------------------------------------------------------------------------------------------------------------------------------
E
M
A
N
R
L
A
G
L
E
N
S
L
E
S
E
K
V
S
R
E
Q
L
I
K
Q
K
D
Q
---
L
N
S
L
-------
L
A
S
L
E
S
E
G
A
E
R
E
K
R
L
R
E
L
E
A
--
K
L
D
E
T
L
---
K
N
L
E
L
E
K
L
A
R
M
E
L
E
A
-
R
L
A
K
T
-
E
K
D
R
A
I
L
E
-
L
K
L
A
E
A
I
D
E
K
S
K
L
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
75.09
26%
92
- C3 -
1DG3
-
GBP1_HUMAN
A:
[462-570]
--------------------------------------------------------------------------------------------------------------------------
Q
T
Y
L
K
S
K
E
S
M
T
D
A
I
L
Q
T
D
Q
T
L
T
E
K
E
K
E
I
E
V
E
R
V
K
A
E
S
A
Q
A
S
A
K
M
---
L
H
E
M
-------
Q
R
----
K
N
E
Q
M
M
E
Q
-----------------
K
E
R
S
Y
Q
E
H
L
K
Q
L
T
E
K
M
E
N
D
R
V
-
Q
L
L
K
E
-
Q
E
-
R
T
L
A
L
K
L
Q
E
Q
E
Q
L
L
K
E
G
F
Q
K
E
S
R
I
M
K
N
E
I
Q
D
L
Q
T
K
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
74.27
18%
-15
- C4 -
2N01
-
?
B:
[1-106]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
H
M
N
A
K
I
L
K
D
R
R
Y
Y
Y
D
Y
D
Y
A
T
R
----
T
K
K
S
W
L
I
P
S
R
V
Y
D
D
G
K
F
T
Y
I
N
M
D
L
----
T
R
F
P
TGN
F
P
A
V
F
A
R
E
K
E
-
H
A
---
E
D
F
L
V
N
T
T
V
E
G
N
---
T
L
I
V
H
G
T
Y
P
F
L
V
V
R
H
G
D
N
V
V
G
L
R
R
N
K
Q
K
--------------------------------
10
PsiBlast_PDB
73.83
26%
107
- C3 -
4TT1
-
LTP_HHV11
A:
[6-91]
----------------------------------------------------------------------------------------------------------------------------------------------------
A
K
Q
Q
R
A
E
A
T
E
R
V
T
A
G
L
R
E
V
L
A
A
R
E
R
-------
R
A
Q
L
E
A
E
G
L
A
N
L
K
T
L
L
K
V
V
A
--
V
P
A
T
V
A
KTL
D
Q
A
R
S
A
E
E
I
A
D
Q
V
E
I
-
L
V
D
Q
T
-
E
K
A
R
E
L
D
V
-
Q
A
V
A
W
L
E
H
A
Q
R
T
F
E
T
H
P
L
S
A
A
S
G
D
G
P
G
L
L
T
R
Q
G
A
R
L
Q
A
L
F
D
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
73.35
28%
78
- C3 -
3DTP
-
MYH11_CHICK
B:
[841-952]
-------------------------------------------------------------------------------------------------------------------------
W
R
L
F
T
K
V
K
P
L
L
Q
S
A
--
E
R
E
K
E
M
A
S
M
K
E
E
F
T
R
L
K
E
A
L
E
K
S
E
A
R
R
K
E
---
L
E
E
K
MVSLLQE
K
N
D
L
Q
L
Q
V
Q
A
E
Q
D
N
L
A
D
A
E
E
--
R
C
D
Q
L
I
---
K
N
-------
K
I
Q
L
E
A
-
K
V
K
E
M
N
E
R
L
E
D
E
E
E
M
N
A
E
L
T
A
K
K
R
K
L
E
D
E
C
S
E
L
K
R
D
I
D
D
L
E
L
T
L
A
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
72.98
26%
112
- C3 -
4TT0
9
LTP_HHV11
A:
[6-91]
----------------------------------------------------------------------------------------------------------------------------------------------------
A
K
Q
Q
R
A
E
A
T
E
R
V
T
A
G
L
R
E
V
L
A
A
R
E
R
-------
R
A
Q
L
E
A
E
G
L
A
N
L
K
T
L
L
K
V
V
A
--
V
P
A
T
V
A
KTL
D
Q
A
R
S
A
E
E
I
A
D
Q
V
E
I
-
L
V
D
Q
T
-
E
K
A
R
E
L
D
V
-
Q
A
V
A
W
L
E
H
A
Q
R
T
F
E
T
H
P
L
S
A
A
S
G
D
G
P
G
L
L
T
R
Q
G
A
R
L
Q
A
L
F
D
T
R
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
72.33
18%
-33
- C4 -
2N01
-
?
B:
[7-105]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
L
K
D
R
R
Y
Y
Y
D
Y
D
Y
A
T
R
T
------
K
K
S
W
L
I
P
S
R
V
Y
D
D
G
K
F
T
Y
I
N
M
D
L
TRFP
T
G
N
F
----
P
A
V
F
A
R
E
K
E
H
A
E
D
F
L
V
N
T
T
V
E
G
-------
N
T
L
I
V
H
G
T
Y
P
F
L
V
V
R
H
G
D
N
V
V
G
L
R
R
N
K
Q
K
--------------------------------
16
PsiBlast_PDB
71.47
26%
91
- C3 -
1F5N
-
GBP1_HUMAN
A:
[462-570]
--------------------------------------------------------------------------------------------------------------------------
Q
T
Y
L
K
S
K
E
S
M
T
D
A
I
L
Q
T
D
Q
T
L
T
E
K
E
K
E
I
E
V
E
R
V
K
A
E
S
A
Q
A
S
A
K
M
---
L
H
E
M
-------
Q
R
----
K
N
E
Q
M
M
E
Q
-----------------
K
E
R
S
Y
Q
E
H
L
K
Q
L
T
E
K
M
E
N
D
R
V
-
Q
L
L
K
E
-
Q
E
-
R
T
L
A
L
K
L
Q
E
Q
E
Q
L
L
K
E
G
F
Q
K
E
S
R
I
M
K
N
E
I
Q
D
L
Q
T
K
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
71.10
16%
90
- C3 -
4MT8
-
ERS1_ARATH
A:
[2-101]
--------------------------------------------------------------------------------------------------------------------------------------
A
--
S
H
A
A
I
L
E
E
S
M
H
A
R
D
Q
L
M
E
Q
N
F
A
L
D
K
A
R
Q
E
---
A
E
M
A
-------
V
H
A
R
N
D
F
L
A
V
M
N
H
E
M
R
T
P
M
H
--
A
I
I
S
L
S
---
S
L
L
L
E
T
E
L
S
P
E
Q
R
V
M
-
I
E
T
I
L
-
K
S
S
N
L
V
A
T
-
L
I
S
D
V
L
D
L
S
R
L
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
70.69
9%
67
- C3 -
4PXU
1
KL61_DROME
A:
[8-159]
------------------------------------------------------------------------------------------------------------------------------------
M
S
K
--
E
I
Q
T
N
L
Q
V
I
E
E
N
N
Q
R
H
K
A
M
L
D
S
M
Q
E
K
F
A
T
---
I
I
D
S
-------
S
L
Q
S
V
E
E
H
A
K
Q
M
H
K
K
L
E
Q
L
G
A
M
S
L
P
D
A
E
---
E
L
Q
N
L
Q
E
E
L
A
N
E
R
A
L
-
A
Q
Q
E
D
-
A
L
L
E
S
M
M
M
-
Q
M
E
Q
I
K
N
L
R
S
K
N
S
I
S
M
S
V
H
L
N
K
M
E
E
S
R
L
T
R
N
H
R
I
D
D
I
K
S
G
I
Q
D
Y
Q
K
L
G
-
I
E
A
S
Q
S
A
Q
A
E
L
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
69.27
25%
44
- C3 -
2CSX
-
SYM_AQUAE
A:
[360-437]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
M
A
H
K
F
L
G
G
E
V
S
G
A
R
D
E
E
Y
A
K
I
A
Q
E
S
I
K
N
Y
E
N
Y
M
E
K
V
N
F
Y
K
A
I
E
E
I
L
K
F
T
S
Y
L
N
K
Y
V
D
E
K
Q
P
W
A
L
N
K
E
R
K
K
E
E
L
Q
K
V
L
Y
A
L
V
D
G
L
F
V
L
T
H
L
L
Y
P
I
T
P
N
K
M
K
E
A
L
Q
M
L
G
E
K
----
E
F
L
K
E
L
K
P
Y
S
K
N
T
Y
K
L
G
E
R
K
I
L
F
P
----
K
R
E
G
----------------------------------------------------------------------------------------------
14
PsiBlast_PDB
68.72
25%
43
- C3 -
2CT8
-
SYM_AQUAE
A:
[360-437]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
M
A
H
K
F
L
G
G
E
V
S
G
A
R
D
E
E
Y
A
K
I
A
Q
E
S
I
K
N
Y
E
N
Y
M
E
K
V
N
F
Y
K
A
I
E
E
I
L
K
F
T
S
Y
L
N
K
Y
V
D
E
K
Q
P
W
A
L
N
K
E
R
K
K
E
E
L
Q
K
V
L
Y
A
L
V
D
G
L
F
V
L
T
H
L
L
Y
P
I
T
P
N
K
M
K
E
A
L
Q
M
L
G
E
K
----
E
F
L
K
E
L
K
P
Y
S
K
N
T
Y
K
L
G
E
R
K
I
L
F
P
----
K
R
E
G
----------------------------------------------------------------------------------------------
3
PsiBlast_PDB
62.54
29%
125
* C6 *
3S98
-
INAR1_HUMAN
A:
[230-277]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
F
Q
V
Q
W
L
H
A
F
L
K
R
N
P
----
Y
K
W
K
Q
I
P
D
CENV
K
T
T
Q
C
V
F
P
Q
N
V
F
Q
K
G
I
Y
L
L
R
V
Q
A
S
----
D
G
N
N
----
T
S
F
W
S
E
E
I
K
-
F
D
T
-----------------------------------------------------------------------------
12
PsiBlast_PDB
62.36
20%
60
- C3 -
4CGK
-
?
A:
[42-195]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
L
T
A
Q
Q
Q
-
E
A
Q
K
Q
V
D
Q
I
Q
E
Q
V
S
A
I
Q
A
E
Q
S
N
L
Q
A
E
N
D
R
L
Q
A
E
S
K
K
L
E
G
E
I
T
E
L
S
K
N
I
V
S
R
N
Q
S
L
E
K
Q
A
R
S
A
Q
T
N
G
A
V
T
S
Y
I
N
T
I
V
N
S
K
S
I
T
E
A
I
S
R
V
A
-------
A
M
S
E
I
V
S
A
N
N
K
M
L
E
Q
Q
K
A
D
K
K
A
I
S
--
E
K
Q
V
A
N
N
D
A
I
N
T
V
-------
I
A
N
Q
Q
K
L
A
D
D
A
Q
A
L
T
T
K
Q
A
E
L
K
A
A
E
L
S
L
A
A
E
K
A
T
A
E
G
E
K
A
S
L
L
E
Q
K
A
----
A
A
E
A
E
A
R
A
A
A
V
A
E
A
A
Y
K
E
K
R
A
S
Q
Q
----
Q
S
V
L
----
A
S
A
N
T
N
L
T
A
-
Q
V
Q
A
V
S
E
S
A
A
A
P
V
R
A
K
V
R
P
T
Y
S
T
N
A
S
S
Y
P
I
G
E
C
T
W
G
V
K
T
L
A
P
W
A
G
D
Y
W
G
---
N
G
A
Q
W
A
T
S
A
A
A
A
G
F
R
T
G
S
T
P
Q
V
G
A
I
A
C
W
5
PsiBlast_PDB
62.16
29%
78
- C6 -
3SE4
-
INAR1_HUMAN
A:
[234-281]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
F
Q
V
Q
W
L
H
A
F
L
K
R
N
P
G
N
--
Y
K
W
K
Q
I
P
D
CENV
K
T
T
Q
C
V
F
P
Q
N
V
F
Q
K
G
I
Y
L
L
R
V
Q
A
S
----
D
G
N
N
----
T
S
F
W
S
E
E
I
K
-
F
D
T
E
I
Q
--------------------------------------------------------------------------
4
PsiBlast_PDB
61.08
29%
115
- C6 -
3SE3
-
INAR1_HUMAN
A:
[234-281]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
F
Q
V
Q
W
L
H
A
F
L
K
R
N
P
G
N
--
Y
K
W
K
Q
I
P
D
CENV
K
T
T
Q
C
V
F
P
Q
N
V
F
Q
K
G
I
Y
L
L
R
V
Q
A
S
----
D
G
N
N
----
T
S
F
W
S
E
E
I
K
-
F
D
T
E
I
Q
--------------------------------------------------------------------------
6
PsiBlast_PDB
59.65
22%
29
- C4 -
3ZBI
-
?
B:
[20-76]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
Y
Q
Y
V
M
S
E
Q
----
P
E
M
R
S
I
Q
P
V
H
V
W
D
N
Y
R
F
T
R
F
E
F
P
A
----
N
A
E
L
----
P
Q
V
Y
M
I
S
A
S
-
G
K
E
T
L
P
N
S
H
V
V
G
E
N
R
N
I
I
E
V
E
T
V
A
K
E
W
R
I
R
L
G
D
K
V
V
G
V
R
N
N
N
F
A
P
G
R
G
A
---
V
A
T
G
T
A
S
P
D
V
R
R
V
Q
I
-------------
8
PsiBlast_PDB
59.04
22%
31
- C4 -
3JQO
-
?
B:
[21-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
Y
Q
Y
V
M
S
E
Q
----
P
E
M
R
S
I
Q
P
V
H
V
W
D
N
Y
R
F
T
R
F
E
F
P
A
----
N
A
E
L
----
P
Q
V
Y
M
I
S
A
S
-
G
K
E
T
L
P
N
S
H
V
V
G
E
N
R
N
I
I
E
V
E
T
V
A
K
E
W
R
I
R
L
G
D
K
V
V
G
V
R
N
N
N
F
A
P
G
R
G
A
---
V
A
T
G
T
A
S
P
D
V
R
R
V
Q
I
-------------