@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0482: (2015-12-15 )
MSNNMRKLFSMIANSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTKLPPLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMEEKGVQNA
Atome Classification :
(18 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-...10-......-.--.20........-30.-..-------------------------.....40..-..---..-------------..50.----........60---....-....70-.--------------------------.......---------------------------.80..-----.....----.90-...-------------......100---..-----.......110-...------.----------.---------.-------.-..120.-----------------.......130.......140.-----....----------..150------------.........160---.......170--------.......-----.180.......190.......------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSN
N
M
R
-
K
L
F
S
M
-
I
ANS
K
D
-
K
--
K
E
K
L
I
E
S
L
Q
EN-ELL-N
T
-------------------------
D
E
K
K
K
I
I
D
Q
-
I
K
---
T
M
-------------
H
D
F
-
F
----
K
Q
MHTNK
G
A
L
---
D
K
V
L
-
R
N
Y
M
K
--
D
--------------------------
Y
R
A
V
I
K
S---------------------------I
G
V
D
K
-----
F
K
K
V
Y
----
R
L
--
L
E
S
-------------
E
T
M
E
L
L
H
-----
A
I
-----AENP
N
F
L
F
---
S
K
F
------
D
----------
R
---------
S
-------
I
-
L
G
I
F
-
L
-----------------
P
F
FSK
P
I
M
F
K
M
S
I
R
E
M
DSQ
I
E
-----
L
YGT----------KLP--------------
P
L
K
L
F
V
M
TDEE
V
---
N
F
Y
AN
L
K
T
I
---------
E
Q
Y
N
D
Y
V
-----
R
D
L
L
M
K
F
D
L
E
K
Y
M
E
EKGVQNA------------------------------------------
3
HHSearch
99.26
98%
-128
- C3 -
2G3V
1
CAGS_HELPY
A:
[22-182]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
I
E
S
L
Q
E
N
-
E
L
L
-
N
T
-------------------------
D
E
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I
I
D
Q
-
I
K
---
T
M
-------------
H
D
F
-
F
----
K
Q
M
H
T
N
K
G
A
L
---
D
K
V
L
-
R
N
Y
M
K
--
D
--------------------------
Y
R
A
V
I
K
S
---------------------------
I
G
V
D
K
-----
F
K
K
V
Y
----
R
L
--
L
E
S
-------------
E
T
M
E
L
L
H
-----
A
I
-----
A
E
N
P
N
F
L
F
---
S
K
F
------
D
----------
R
---------
S
-------
I
-
L
G
I
F
-
L
-----------------
P
F
F
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P
I
M
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M
S
I
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M
D
S
Q
I
E
-----
L
Y
G
T
----------
K
L
P
--------------
L
L
K
L
F
V
M
T
D
E
E
M
---
N
F
Y
A
N
L
K
T
I
---------
E
Q
Y
N
D
Y
V
-----
R
D
L
------------------------------------------------------------
1
PsiBlast_PDB
98.03
92%
-128
- C3 -
2G3V
1
CAGS_HELPY
A:
[22-182]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
I
E
S
L
Q
E
N
-
E
L
L
-
N
T
-------------------------
D
E
K
K
K
I
I
D
Q
-
I
K
---
T
M
-------------
H
D
F
-
F
----
K
Q
M
H
T
N
K
G
A
L
---
D
K
V
L
-
R
N
Y
M
K
--
D
--------------------------
Y
R
A
V
I
K
S
---------------------------
I
G
V
D
K
-----
F
K
K
V
Y
----
R
L
--
L
E
S
-------------
E
T
M
E
L
L
H
-----
A
I
-----
A
E
N
P
N
F
L
F
---
S
K
F
------
D
----------
R
---------
S
-------
I
-
L
G
I
F
-
L
-----------------
P
F
F
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K
P
I
M
F
K
M
S
I
R
E
M
D
S
Q
I
E
-----
L
Y
G
T
----------
K
L
P
--------------
L
L
K
L
F
V
M
T
D
E
E
M
---
N
F
Y
A
N
L
K
T
I
---------
E
Q
Y
N
D
Y
V
-----
R
D
L
------------------------------------------------------------
14
Fugue
51.47
14%
-60
- C2 -
1V0D
3
DFFB_MOUSE
A:
[85-328]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
D
I
T
-
R
F
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V
-
F
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--
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A
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S
D
-
E
---
Q
A
-------------------------
P
L
R
Q
K
L
L
A
D
-
L
L
---
H
H
V
SQNITAETREQD
P
S
W
-
F
EGLE
S
R
F
R
N
K
S
G
Y
L
---
R
Y
S
C
-
E
S
R
I
R
--
G
--------------------------
Y
L
R
E
V
S
A
---------------------------
Y
-
T
S
M
-----
V
D
E
A
A
----
Q
E
--
E
Y
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-------------
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V
L
G
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M
C
-----
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-----
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K
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Q
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---
S
Y
F
------
D
----------
R
GAEASSRLC
T
-------
P
-
E
G
W
F
-
S
C
QGPFDLESCLSK
H
S
I
N
P
Y
G
N
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E
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I
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F
S
T
W
N
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E
-----
K
K
R
T
----------
V
V
P
--------------
T
L
A
E
A
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D
G
R
E
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N
W
E
Y
F
Y
S
L
L
F
T
A
---------
E
N
L
K
L
V
H
-----
I
A
C
H
K
K
T
T
H
K
L
E
C
D
R
S
R
I
Y
R
P
QTG---------------------------------------
21
Fugue
47.52
17%
-41
- C2 -
2QQ8
3
A:
[15-326]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YFQGN
A
V
L
T
W
N
NEILPNWEWCS
R
K
V
R
D
L
W
W
Q
G
I
P
P
S
V
R
G
K
V
W
S
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-
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L
-
N
IT
H
E
L
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L
A
R
A
-
K
E
R
-
W
E
-------------------------
A
S
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E
L
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K
L
D
-
I
S
R
TF
P
N
-------------
L
C
I
-
F
----
Q
Q
G
G
P
Y
H
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M
L
---
H
S
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L
-
G
A
Y
T
C
--
Y
R
P
DVGYVQG
M
S
F
I
A
A
V
L
I
L
N
LD
T
A
D
A
F
I
A
F
S
N
L
---------------------------
L
N
K
P
C
-----
Q
M
A
F
F
RVDH
G
L
--
M
L
T
-------------
Y
F
A
A
F
E
V
-----
F
F
-----
E
E
N
L
P
K
L
F
---
A
H
F
------
K
----------
K
---------
N
NLTPDIY
L
-
I
D
W
I
-
F
-----------------
T
L
Y
S
K
S
L
P
L
D
L
A
C
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C
R
DG
E
E
F
L
F
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----------
A
L
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--------------
I
L
K
L
F
E
D
I
L
T
K
M
---
D
F
I
H
M
A
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F
L
T
R
LPEDLP
A
E
E
L
F
A
S
I
-----
A
T
I
Q
M
Q
S
R
N
K
K
W
A
Q
V
L
T
A
L
Q
K
------------------------------------------
9
HHSearch
47.22
27%
-104
- C3 -
3JSZ
1
?
A:
[334-448]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-------------
T
A
F
-
F
----
N
R
C
E
E
E
G
K
N
I
F
E
L
R
K
G
L
-
Q
D
A
F
R
SD
S
--------------------------
L
L
E
L
Y
V
F
---------------------------
L
G
P
A
K
-----
F
K
E
V
F
----
K
L
--
K
E
T
Q
I
K
Y
I
D
D
H
ISEFN
E
H
D
L
L
L
H
-----
L
I
-----
S
D
N
P
S
E
I
N
QHT
L
D
F
G
R
A
K
V
M
Y
----------
M
---------
D
-------
I
-
A
K
E
H
-
Y
-----------------
S
A
F
Y
K
P
L
V
E
E
I
S
G
P
G
A
I
Y
N
A
L
-----
G
G
A
S
----------
N
F
T
--------------
T
T
H
R
R
S
T
G
P
M
L
P
---
T
T
P
P
R
V
L
Q
V
---------
F
C
D
A
H
D
K
-----
G
P
F
V
S
D
N
I
A
R
W
Q
T
N
V
R
E
L
G
V
L
------------------------------------------
12
HHSearch
44.50
20%
-49
- C3 -
3OR1
-
?
C:
[22-99]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
D
-
W
--
C
P
E
W
V
K
Y
A
K
G
S
E
G
I
G
A
G
S
-------------------------
A
D
H
Q
K
I
I
----
D
---
F
L
-------------
Q
D
Y
-
Y
----
K
A
N
G
I
A
----------------
P
--
M
--------------------------
V
R
I
L
S
K
N
---------------------------
T
G
F
-
A
-----
L
K
E
I
Y
----
E
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--
F
P
S
-------------
G
P
G
K
G
A
C
-----
K
M
-----
A
G
L
P
K
P
T
G
---
C
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
41.99
20%
-78
- C- -
1OIS
-
TOP1_YEAST
A:
[185-310]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
F
-
F
----
A
A
L
L
E
S
D
H
A
K
---
N
P
V
F
Q
K
N
F
F
N
--
D
--------------------------
F
L
Q
V
L
K
E
S
GGPLNG--------------------
I
E
I
K
E
FSRCD
F
T
K
M
F
----
D
Y
--
F
Q
L
-------------
Q
K
E
Q
K
K
Q
LTE
K
K
Q
I
R
L
E
R
E
K
F
E
E
D
Y
K
F
---
C
E
L
------
D
G
R
R
E
Q
V
G
NFK
V
---------
E
-------
P
-
P
D
L
F
-
R
-----------------
G
R
G
A
H
P
K
T
G
K
L
K
R
R
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
41.14
30%
-63
- C3 -
2WZF
-
?
A:
[343-396]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
R
K
S
I
F
D
L
-
R
K
---
G
L
-------------
Q
D
A
-
F
----
R
S
-----------
D
S
L
L
-
Q
L
Y
----
D
--------------------------
F
---------------------------------
L
G
A
D
K
-----
F
K
E
V
F
----
K
L
--
K
E
A
-------------
Q
S
K
Y
I
N
E
-----
H
I
-----
S
E
F
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E
K
D
L
---
L
L
N
------
L
----------
I
---------
S
-------
D
-
K
P
S
E
-
I
-----------------
S
Q
H
T
L
D
F
V
K
A
K
A
M
Y
I
D
I
A
K
E
H
-----
Y
S
A
F
----------
Y
K
P
--------------
L
V
E
E
I
S
G
P
G
A
I
Y
---
N
A
L
G
G
A
G
S
F
---------
T
T
T
H
R
R
L
-----
T
G
P
M
L
P
T
T
P
P
R
V
L
Q
V
F
C
D
A
H
D
------------------------------------------
7
HHSearch
40.86
16%
-55
- C3 -
3X38
2
?
A:
[7-43]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
N
E
T
L
---
S
K
L
I
-
L
G
G
L
R
--
L
---------------------------
R
G
I
S
N
S
-----------------------------
I
T
D
-----
Y
Q
K
L
Y
----
K
I
--
T
F
D
-------------
A
A
E
F
T
H
R
-----
D
E
-----
L
K
R
I
S
M
G
S
---
G
E
E
------
V
----------
S
---------
F
-------
E
-
S
L
Q
E
-
T
-----------------
V
E
T
L
L
K
L
F
T
K
S
----------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
37.84
20%
81
- C3 -
3H00
-
A:
[1-39]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
N
Y
T
S
-
L
I
H
S
L
-
I
E
E
S
Q
N
-
Q
--
Q
E
K
N
E
Q
E
L
L
E
L
-
D
K
W
-
A
S
-------------------------
L
W
N
W
F
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
36.43
15%
-12
- C2 -
3HM6
19
X:
[72-638]
IPFLDYKVYAERIFFPGHSPLHRDLGVPESRRPTVEQGLGQLSNLLNSKLFLTKFIHTLETQRTFSARDRAYVASLLTVALHGKLEYFTDILRTLLSDLVAQYVAKNPKLMLRRTETVVEKLLTNWMSICLYTFVRDSVGEPLYMLFRGIKHQVDKGPVDSVTGKAKYTLNDNRLLREDVEYRPLTLNALLAAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVPCGGIRPWHLV
K
P
S
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P
E
-
I
Y
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R
-
L
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G
-
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--
L
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F
V
D
D
L
F
Q
V
-
I
L
-----------------------------
S
T
S
R
P
V
P
L
A
-
V
K
---
Y
F
-------------
F
D
L
-
L
----
D
E
Q
A
Q
Q
H
G
I
S
---
D
Q
D
T
-
I
H
I
W
K
--
T
--------------------------
N
S
L
P
L
R
-----------------------------------------------------------------------
F
W
I
-----
N
I
-----
I
K
N
P
Q
F
V
F
---
D
V
Q
------
T
----------
S
---------
D
-------
N
-
M
D
A
V
-
L
-----------------
L
V
I
A
Q
T
F
M
D
A
C
T
L
A
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I
N
K
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-----
L
Y
A
R
----------
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--------------
R
Y
K
R
M
V
E
--------
R
Y
Y
A
D
I
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T
---------
V
P
A
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Q
E
-----
M
N
S
V
L
A
E
L
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W
N
Y
S
G
D
L
G
A
R
V
A
LHELYKYINKYYDQIITALEEDGTAQKMQLGYRLQQIAAAVE
22
Fugue
31.34
20%
88
* C2 *
3M3N
-
TYB4_MOUSE
W:
[1-50]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
S
G
-
N
--
K
A
A
L
L
D
Q
I
R
E
G
-
A
Q
L
-
K
K
-------------------------
V
G
R
D
A
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Q
-
I
R
---
Q
G
-------------
I
Q
L
-
K
----
K
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
30.18
16%
24
- C1 -
3FOK
-
?
A:
[3-299]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPI
I
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E
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F
-
E
A
L
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R
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--
A
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E
-
L
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G
-
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A
A
DHPARGALAVGDNETAM
A
N
R
Y
E
L
L
E
R
M
A
I
---
A
L
-------------
S
R
P
G
V
----
D
G
V
L
G
T
P
D
I
I
---
D
D
L
A
-
A
L
G
L
L
--
D
--------------------------
D
K
I
V
V
G
S
M
N
RGGLRGASFEMDDRYTGYN
V
S
S
M
V
D
R
G
V
D
F
-----
A
K
T
L
V
----
R
I
N
L
S
D
A
-------------
G
T
A
P
T
L
E
-----
A
T
-----
A
H
A
V
N
E
A
A
---
A
A
-------
Q
----------
L
---------
P
-------
I
M
L
E
P
F
M
S
-----------------
N
W
V
N
G
K
V
V
N
D
L
S
T
D
A
V
I
Q
S
V
A
-----
I
A
A
G
LGNDSSY
T
W
M
K
L
P
VVEE
M
E
R
V
M
E
STT
M
P
T
L
L
L
G
G
E
G
G
P
D
---
A
T
F
A
S
W
E
H
A
---------
L
T
L
P
G
V
R
GLTVG
R
T
L
L
Y
P
Q
D
G
D
V
A
A
A
V
D
T
A
A
R
L
V
HTDI-------------------------------------
8
HHSearch
22.41
33%
99
- C3 -
3SE5
-
NMFIC_NEIMB
A:
[10-26]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
---------------------------
I
D
E
Q
S
-----
L
H
N
A
R
----
R
L
--
F
E
S
-------------
G
D
I
D
R
I
E
-----
V
G
-----
T
T
A
G
L
Q
Q
I
---
H
R
Y
------
L
----------
F
---------
G
-------
G
-
L
Y
D
F
-
A
-----------------
G
Q
I
R
E
D
N
I
S
K
G
G
F
R
F
A
N
A
M
Y
L
-----
K
E
A
L
----------
V
K
I
--------------
E
Q
M
P
E
R
T
F
E
E
I
I
---
A
K
Y
V
E
M
N
I
A
---------
H
P
F
L
E
G
N
-----
G
R
S
T
R
I
W
L
D
L
V
L
K
K
N
L
K
K
V
V
N
------------------------------------------
11
HHSearch
17.04
6%
129
- C3 -
1O7D
-
?
B:
[5-20]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
-
Y
S
---
T
P
-------------
A
C
Y
-
L
----
W
E
L
N
K
A
N
L
S
W
---
S
V
K
K
-
D
D
F
F
P
--
Y
--------------------------
A
D
G
P
Y
M
F
---------------------------
W
T
G
Y
F
-----
S
S
R
P
A
----
L
K
--
R
Y
E
-------------
R
L
S
Y
N
F
L
-----
Q
V
-----
C
N
Q
L
E
A
L
A
---
G
P
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
10.30
38%
379
- C3 -
3VU5
-
?
B:
[9-22]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
I
---------
E
E
Y
T
K
K
I
-----
E
E
L
I
K
K
S
--------------------------------------------------------
5
HHSearch
9.73
33%
246
- C3 -
2DT7
-
SF3A3_HUMAN
A:
[82-96]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
---
E
F
Y
N
R
L
K
Q
I
---------
K
E
F
H
R
----------------------------------------------------------------------
10
HHSearch
7.58
36%
285
* C3 *
2LFC
-
?
A:
[112-125]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
Q
T
V
---------
K
N
Y
Q
G
Y
V
-----
Q
D
G
H
D
H
D
F
G
R
D
P
K
Y
L
H
Q
F
E
G
E
------------------------------------------