@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0491: (2015-12-15 )
MKQSLREQKLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTALYDFSNFLEDHVNVFYENVLNIDDVKTEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINDGQDPQKTLSRLIPLQSGKNDASSFKANNSFVSLVYVYAYFMLETIRQSYRILRLLEKPINNNISEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSIIPNWIQIDMSVEAKKKELFEKYFQNIDEVTNKMLDQENQNKNSD
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------.........10--........20........30.-.....--..40....--....50........60....-.....70.----......--------.80........90......--------..100..---.....110.......120.......130.......140.......150.---......-160......--------------.-----170.----------.-----.....180-....----...-..190..-....-.200........210.......220..--.....230..---.....240..---..----...250--------------.........260......-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------MK
Q
S
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MEG--E
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-
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N----VLNIDD--------
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SLNA
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--------
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S---NQDL
D
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EINDGQ
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LIPLQSGKNDASSFKANN
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PINNN---
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----
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-
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QNKIYPTNHA
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I--IP
N
W
I
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DMS---
V
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----
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I
----------------
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M
LDQENQNKNSD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
88.09
13%
-41
- C5 -
3Q9L
3
MIND_ECOLI
A:
[2-258]
-------------------------------------------------------------------------------------------------------------A
R
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VTSGKGGV
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E----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
77.32
15%
-56
- C5 -
4ART
4
Y273_ATV
A:
[22-270]
--------------------------------------------------------------------------------------------------------------------------
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LK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
71.60
17%
-39
- C3 -
2BVL
8
TOXB_PEPDI
A:
[1-543]
------------------------------------------------------------MSLVN
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NVRFRTQE
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----
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SEIFSSL
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SKGIINQ
G
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ANADN
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T
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GAL----------------------------------------------------------------------------------------------------------------------------
24
Fugue
66.11
13%
-28
- C2 -
4M59
3
?
A:
[6-714]
PD
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HPLPT
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26
Fugue
62.90
8%
-31
- C7 -
1UDD
-
?
A:
[1-215]
-------------------------------------------------------------------------------------------------------------------------------
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--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
59.56
8%
-7
* C7 *
1L8W
-
?
A:
[52-342]
--------------------------------------------------------------------------------------------------------------------------------
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D
G
G
---
A
E
F
G
----
Q
D
E
M
K
K
D
D
Q
I
A
-
A
A
I
A
-
L
R
G
M
A
K
D
G
K
F
A
V
K
D
G
----------------
E
K
E
K
A
E
G
A
---
I
K
G
A
A
E
S
A
V
R
---
K
V
----
L
G
A
I
----------------
T
G
L
I
G
D
A
V
S
S
G
L
R
K
V
G
D
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
56.51
5%
-10
* C5 *
1N5D
2
CBR1_PIG
A:
[1-288]
---------------------------------------------------------------------------------------------------------------SSN
T
R
V
A
L
V
T
G
A
N
K
G
I
G
F
A
I
V
R
--
D
L
C
R
Q
F
A
G
D
V
V
L
T
A
R
D
V
A
R
G
Q
-
A
A
V
K
Q
--
L
Q
A
E
G
L
S
P
--
R
F
H
Q
L
D
I
I
D
L
Q
S
I
R
A
-
L
C
D
F
-
L
R
K
E
Y
G
G
L
----
D
V
L
V
N
N
--------
A
---
A
I
A
F
Q
L
D
N
P
T
P
F
H
I
Q
--------
A
E
L
T
M
K
T
---
N
F
M
G
T
R
N
V
C
T
E
L
L
P
L
I
K
P
Q
G
R
V
V
N
V
S
S
T
E
G
V
R
A
L
N
E
C
S
P
E
L
Q
Q
K
F
K
S
E
T
---
I
T
E
E
E
L
-
V
G
L
M
N
K
F
V
E
--------------
D
-----
T
K
N
G
----------
V
-----
H
R
K
E
G
W
---
S
D
S
T
----
Y
G
V
-
T
K
I
G
V
S
V
-
L
S
R
I
-
Y
A
R
-
K
L
R
E
Q
R
A
G
D
K
-------
I
L
L
N
A
C
--
C
P
G
W
V
R
T
D
M
G
GPK
A
P
K
S
P
E
V
G
A
E
---
T
P
----
V
Y
L
A
L
LPSDAEGPHG
Q
F
V
T
D
K
K
V
V
E
W
G
V
P
P
E
S
Y
P
W
V
N
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
54.61
9%
-67
- C6 -
3BHW
-
?
A:
[41-184]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
E
N
V
L
--------
Q
R
--------
A
K
R
Q
S
S
L
M
R
N
R
L
E
T
M
G
P
E
--
L
W
Q
M
V
R
---
D
G
--
S
T
Q
V
A
I
Q
A
-
V
F
A
A
A
I
K
H
S
T
L
L
G
D
F
L
-
D
L
V
V
R
D
Q
F
R
--------------
M
-----
F
R
P
D
L
P
R
K
M
W
D
Q
Y
L
E
Q
C
R
N
R
D
P
L
M
-------
D
S
T
A
N
K
L
A
D
-
C
V
Y
R
I
L
V
-
E
V
G
Y
-
I
T
-----
Y
R
L
K
S
V
R
I
S
G
E
V
M
S
Y
L
R
E
N
N
--
E
Q
Y
V
I
R
C
I
Q
V
---
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
45.24
28%
-46
- C6 -
3S5T
5
?
A:
[71-133]
----------------------------------------------------------------------------------------------------------------------------------------
I
G
E
K
P
A
Q
V
V
K
E
Y
T
E
H
Y
V
K
E
Y
-
R
T
D
L
E
P
M
Y
A
E
D
E
K
N
K
-------
S
I
G
A
W
Y
S
Y
Y
K
-
G
I
E
S
-
H
V
Q
L
Y
Y
K
N
----
L
L
V
Y
R
I
--------
N
Y
N
E
Y
T
G
G
A
H
G
I
Y
M
T
T
F
L
N
--------
M
D
L
I
N
L
R
---
P
L
K
L
D
D
I
F
T
G
D
Y
K
E
A
L
T
D
L
L
W
N
Q
L
M
A
D
K
K
V
T
T
H
E
A
L
E
D
M
G
Y
G
S
T
G
D
I
A
P
---
T
E
N
F
Y
L
-
D
K
D
G
I
T
F
Y
Y
--------------
N
-----
V
Y
D
I
----------
T
-----
P
Y
A
M
G
P
---
V
E
I
K
----
I
P
Y
-
E
M
M
E
H
M
L
-
G
S
N
P
-
I
I
G
-
E
M
K
S
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
41.84
11%
15
- C6 -
2WPV
1
GET4_YEAST
A:
[240-284]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
Y
S
D
L
N
F
L
Q
L
L
L
I
T
C
--
Q
T
------
K
D
---
K
S
Y
-
F
L
N
L
K
N
---
H
Y
-----
L
D
F
----------------
S
Q
A
Y
K
S
E
L
E
F
L
G
Q
E
Y
F
N
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
38.82
48%
229
- C8 -
1EWK
-
GRM1_RAT
A:
[464-480]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
G
T
W
H
E
G
----
V
L
N
I
D
D
--------
Y
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
37.63
17%
101
- C6 -
1NKP
1
MAX_HUMAN
B:
[36-64]
-------------------------------------------------------------------------------------------------------------------------------------------
A
S
R
A
Q
I
L
D
K
A
T
E
Y
I
Q
Y
M
-
R
R
K
N
H
--
T
H
Q
Q
D
I
D
D
--
L
K
R
Q
N
A
L
L
E
Q
Q
V
R
A
L
-
G
G
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
36.97
20%
155
* C6 *
2KFE
-
NDB51_MESEU
A:
[1-24]
--------------------------------------------------------------------------------------------------------------------------------------------------
G
R
G
R
E
F
M
S
N
L
-
K
E
K
L
S
--
G
V
K
E
K
M
K
N
--
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
35.53
52%
214
* C8 *
3KS9
1
GRM1_HUMAN
A:
[469-485]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
G
T
W
H
E
G
----
V
L
N
I
D
D
--------
Y
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
35.18
26%
75
- C6 -
1ZZP
-
A:
[77-95]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
D
S
-
I
Q
Q
M
R
N
K
F
A
F
R
E
A
I
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
34.64
48%
227
- C8 -
1ISS
-
GRM1_RAT
A:
[464-480]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
G
T
W
H
E
G
----
V
L
N
I
D
D
--------
Y
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
34.24
36%
90
- C6 -
2JPU
-
?
A:
[79-106]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
I
L
W
K
S
A
W
-
T
L
---
H
V
E
G
F
H
E
L
----
S
L
N
E
K
E
--------
V
K
K
L
K
E
D
V
R
K
L
V
I
F
A
V
N
S
L
--------
E
H
H
H
H
H
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
32.69
48%
263
- C8 -
1ISR
-
GRM1_RAT
A:
[464-480]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
G
T
W
H
E
G
----
V
L
N
I
D
D
--------
Y
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
32.21
27%
139
- C6 -
2YPA
1
A:
[61-86]
-------------------------------------------------------------------------------------------------------------------------------------------
L
S
K
N
E
I
L
R
L
A
M
K
Y
I
N
F
L
-
A
K
L
L
N
--
D
Q
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
30.91
19%
143
* C4 *
2FQ3
-
SWI3_YEAST
A:
[311-333]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
W
F
N
L
E
K
I
---
H
S
I
-
E
V
Q
S
L
P
---
E
F
----
F
T
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------