@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_1063: (2015-12-20 )
MQDLKVISKHYAKALKNHTKSDLALLEEIVVGLKNLAEAIKLHKLNQVLAHVSLKVKKEVVLEILEKITPTKACSILKPVMEVVLKNNRLDMLELVAEELSFDSKRTLEATLLVPQKLENNELEEVQQKLQARFNAPVEIAQDTWSKKGVSLSVSSLDLEIGFSKEDILKKIEKQVIQSI
Atome Classification :
(16 SA)
----------------------------------------------------------..-...---------....10........20.......--.30...---.....----40--........-----------50........60.--.......70........80.------.......90........100----..---......-----------.110.-......120...----....130...-....140.---------...--....150..--.--.--.---..160....--..-..170.----------------.....---.180-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------M
Q
-
D
L
K
---------
V
I
S
K
H
Y
A
K
A
L
K
NH
T
K
S
D
L
A
L
L
E
E
--
I
V
V
G
L
K
---
N
L
A
E
A
----
I
K
--
L
H
K
L
N
Q
V
L
-----------
A
H
V
S
L
K
V
K
K
E
V
V
L
--
E
I
L
E
KITP
T
K
A
C
S
I
L
K
P
V
M
E
------
V
V
LKNN
R
L
D
M
L
E
L
V
A
E
E
L------SF---DSKR
T
L
-----------
E
A
T
L
L-VPQKLENN
E
L
E
E
----
V
Q
Q
K
L
Q
A
RFN-APV
E
I
A
-
Q
---------DTW--SKKG
V
S
L
S
V
--
S
--
S
--
L
---
D
L
E
I-GF
S
K
--
E
D
-
I
L
K
K
I
E
----------------
K
Q
V
I
Q---SI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
77.94
21%
-41
* C4 *
1NG6
-
YQEY_BACSU
A:
[1-148]
----------------------------------------------------------
M
S
-
L
L
E
---------
R
L
N
Q
D
M
K
L
Y
M
K
N
R
E
K
D
K
L
T
V
V
R
M
--
V
K
A
S
L
Q
---
N
E
A
I
K
----
L
K
--
K
D
S
L
T
----------------------
E
D
E
E
L
--
T
V
L
S
R
E
L
K
Q
R
-----
K
D
S
L
Q
------
E
F
S
N
A
N
R
L
D
L
V
D
K
V
Q
K
E
L
------
D
I
---
L
E
V
Y
-------------------
L
P
E
Q
L
S
E
E
E
L
R
T
----
I
V
N
E
T
I
A
E
V
G
-
A
S
--------------------
S
K
A
D
M
G
K
V
M
--
G
--
A
--
I
---
M
P
K
V
K
G
K
A
D
--
G
S
-
L
I
N
K
L
V
----------------
S
S
Q
L
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
68.75
24%
-24
- C2 -
3P06
7
?
A:
[1-194]
---------------------------------------------N
G
V
E
L
S
A
V
G
V
L
L
P
V
L
M
D
S
G
R
R
I
S
G
G
A
F
M
A
V
K
G
D
L
S
E
H
I
K
N
P
K
N
T
R
I
A
Q
T
V
A
G
G
T
I
Y
G
L
S
EMV
N
I
D
E
A
----
E
K
--
L
-----------------------
P
I
K
G
A
I
T
V
--
L
P
V
V
Q
A
T
A
T
---
S
I
L
V
P
D
N
Q
------
P
Q
L
A
F
N
S
W
E
A
A
A
C
A
A
D
T
L
-----------
E
S
Q
Q
T
--------------
P
F
L
M
V
T
G
A
V
E
S
G
N
L
S
P
NLL
A
V
Q
K
Q
L
L
V
A
K
P
-
A
G
I
G
L
A
A
N
---------
S
D
R
--
A
L
K
V
V
T
L
E
Q
--
L
--
R
--
Q
---
V
V
G
D
-
K
P
W
R
--
K
P
M
V
T
F
S
S
G
----------------
K
N
V
A
Q
---
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
68.34
20%
-91
- C5 -
1ABV
-
ATPD_ECOLI
A:
[2-105]
-------------------------------------------------------------
E
F
I
---------
T
V
A
R
P
Y
A
K
A
A
F
D
F
A
V
E
H
-
Q
S
V
E
R
--
W
Q
D
M
L
A
---
F
A
A
E
V
----
T
K
--
N
E
Q
M
A
E
L
L
S
G---------
A
L
A
P
-
E
T
L
A
E
S
F
I
--
A
V
C
G
E
Q
L
D
E
N
G
Q
N
L
I
----
R
------
V
M
A
E
N
G
R
L
N
A
L
P
D
V
L
E
Q
F
------
I
H
L
R
A
V
S
E
A
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
65.51
24%
-74
- C5 -
1W3W
-
ANXA8_HUMAN
A:
[41-119]
---------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
A
I
I
--
D
V
L
T
K
R
S
N
T
Q
R
Q
Q
I
A
K
S
F
K
A
------
Q
F
G
K
----
D
L
T
E
T
L
K
S
E
L
------
S
G
---
K
F
E
R
L
I
-----------
V
A
L
M
Y
-
P
P
Y
R
Y
E
A
K
E
L
H
D
----
A
M
K
G
L
G
T
K
E
G
-
V
I
I
E
I
L
-
A
---------
S
R
T
--
K
N
Q
L
R
E
I
M
K
--
A
--
Y
--
E
---
E
D
Y
G
-
S
S
L
E
--
E
D
-
I
Q
A
D
T
S
----------------
G
Y
L
E
R
---
I
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
65.45
24%
-65
- C5 -
1W45
-
ANXA8_HUMAN
A:
[41-119]
---------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
A
I
I
--
D
V
L
T
K
R
S
N
T
Q
R
Q
Q
I
A
K
S
F
K
A
------
Q
F
G
K
----
D
L
T
E
T
L
K
S
E
L
------
S
G
---
K
F
E
R
L
I
-----------
V
A
L
M
Y
-
P
P
Y
R
Y
E
A
K
E
L
H
D
----
A
M
K
G
L
G
T
K
E
G
-
V
I
I
E
I
L
-
A
---------
S
R
T
--
K
N
Q
L
R
E
I
M
K
--
A
--
Y
--
E
---
E
D
Y
G
-
S
S
L
E
--
E
D
-
I
Q
A
D
T
S
----------------
G
Y
L
E
R
---
I
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
61.77
18%
-20
- C1 -
1PGS
-
?
?:
[4-140]
--------------------------------------------------------D
N
T
V
-
N
I
K
---------
T
F
D
K
V
K
N
A
F
G
D
G
L
S
Q
-------------------
S
A
E
G
T
----
F
T
--
F
P
A
D
V
T
T
V
-----------
K
T
I
K
M
F
I
K
N
E
-----------
C
P
N
K
T
C
D
E
W
D
R
Y
A
N
------
V
Y
V
K
N
K
T
T
G
E
W
Y
E
I
G
R
F
I
------
T
P
---
Y
W
V
---------------
G
T
E
K
-
L
P
R
G
L
E
I
D
-
V
T
D
----
F
K
S
L
L
S
G
--
N
-
T
E
L
K
I
Y
-
T
---------
E
T
W
--
L
A
K
G
---
R
E
--
Y
--
S
--
V
---
D
F
D
I
-
V
Y
G
T
--
P
D
-
Y
K
Y
S
A
V
----------------
V
P
V
I
Q
---
Y
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
53.28
18%
-26
- C4 -
4OYF
1
?
A:
[9-416]
EYPV
L
Q
K
I
L
I
G
L
I
L
G
A
I
V
G
L
I
L
G
H
Y
GY
A
H
A
V
H
T
Y
V
K
P
F
G
D
L
F
V
R
L
L
K
M
L
V
M
P
I
V
F
A
S
L
V
V
-
G
A
A
---------
S
I
S
P
A
R
L
G
R
V
G
V
K
I
V
V
Y
Y
L
L
T
S
A
--
F
A
V
T
L
--------
G
----
I
I
--
M
A
R
L
F
N
P
G
-----------
A
G
I
H
L
A
V
G
G
Q
L
-
V
--
H
I
L
L
D
I
V
P
T
N
P
F
G
A
L
A
--------------
N
G
Q
V
L
P
T
I
F
F
A
I
I
L
------
G
I
---
A
I
T
Y
L
M
-----------
N
S
E
N
E
-
K
V
R
K
S
A
E
T
L
L
D
A
----
I
N
G
L
A
E
A
M
Y
K
-
I
V
N
G
V
M
-
Q
-----------
Y
--
A
P
I
G
V
F
A
L
I
--
A
--
Y
--
V
---
M
A
E
Q
-
G
V
H
V
--
V
G
-
E
L
A
K
V
T
----------------
A
A
V
Y
V
---
G
L
T
L
Q
I
L
L
V
Y
F
V
L
L
K
I
Y
GID
P
I
S
F
I
K
H
A
K
D
A
M
L
T
A
F
V
T
RSSSGT
L
P
V
T
M
R
V
A
K
E
M
GISEGIYSFT
L
P
L
G
A
T
INM
D
G
T
A
L
Y
Q
G
V
C
T
F
F
I
A
N
A
L
GSHLT
V
G
Q
Q
L
T
I
V
L
T
A
V
L
A
S
I
G
T
AGVPG
A
G
A
I
M
L
A
M
V
L
H
S
V
GLPLTD
P
N
V
A
A
A
Y
A
M
I
L
G
I
D
A
I
L
D
M
G
R
T
M
V
N
V
T
G
D
L
T
G
T
A
I
V
A
K
T
E
9
HHSearch
48.59
15%
-123
- C5 -
1DC1
4
T2B1_GEOSE
A:
[53-111]
---------------------------------------------------------------------------------------------------
A
S
V
A
K
---
T
P
K
D
L
----
L
Y
--
L
E
D
I
Q
D
A
L
L
Y
A
S
GIS
D
K
A
K
K
F
L
T
E
D
D
K
K
E
S
I
N
--
N
L
I
E
N
F
L
E
P
A
G
E
E
F
I
D
E
L
I
F
------
R
Y
L
L
F
Q
G
D
S
L
G
G
T
M
R
N
I
A
------
G
A
---
L
A
Q
Q
K
L
-----------
T
R
A
I
I
-
S
A
L
D
I
A
N
I
P
Y
K
W
----
L
D
S
R
D
K
K
Y
T
N
-
W
M
D
K
P
E
-
D
---------
D
Y
E
--
L
E
T
F
A
K
G
I
S
--
W
--
T
--
I
---
N
G
K
H
-
R
T
L
M
--
Y
N
-
I
T
V
S
L
V
----------------
K
K
N
V
D
---
I
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
46.62
26%
52
- C3 -
3DU1
-
?
X:
[0-236]
----------------------------------------------------------
H
M
-
N
V
G
---------
E
I
L
R
H
Y
A
A
G
K
R
N
F
Q
H
I
N
L
---
Q
E
--
I
E
L
T
N
A
---
S
L
T
G
A
DLSY
A
D
--
L
R
Q
T
R
L
G
K
-----------
S
N
F
S
H
T
C
L
R
E
A
D
L
SE
A
I
L
W
G
I
D
L
S
E
A
-
D
L
Y
R
A
I
L
R
EADLTG
A
K
L
V
K
T
R
L
E
E
A
N
L
I
K
A
S
L
CGANLN
S
A
---
N
L
S
R
C
L
LFQADLRPSSN
Q
R
T
D
L
-
G
Y
V
L
L
T
G
A
D
L
S
Y
----
A
D
L
R
A
A
S
L
H
H
-
A
N
L
D
G
A
-
K
LCRANFGRT
I
Q
W
--
G
N
L
A
A
D
L
S
G
--
A
--
S
--
L
QGA
D
L
S
Y
-
A
N
L
E
--
S
A
-
I
L
R
K
A
N
LQGADLTGAILKDAEL
K
G
A
I
M
PDG
S
I
H--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
34.89
11%
-51
- C5 -
2HC5
-
YVYC_BACSU
A:
[4-80]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
L
T
T
L
Q
P
V
W
D
R
Y
------
D
T
Q
--
I
H
N
Q
K
D
-----------
N
D
N
E
V
-
P
V
H
Q
V
S
Y
T
N
L
A
E
----
M
V
G
E
M
N
K
L
L
E
P
S
Q
V
H
L
K
-
F
---------
E
L
H
D
-
K
L
N
E
Y
Y
V
K
V
--
I
--
E
--
D
---
S
T
N
E
-
V
I
R
E
--
I
P
-
P
K
R
W
L
D
----------------
F
Y
A
A
M
---
T
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
33.02
13%
20
- C5 -
3V6I
-
VATE_THET8
A:
[121-181]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
N
P
E
D
L
P
H
----
L
E
A
L
A
R
E
----
R
G
V
E
L
------------
Q
A
E
PA
L
R
L
G
V
R
A
V
G
--
A
--
E
GK
T
---
Q
V
E
N
-
S
L
L
A
R
L
D
R
-
A
W
D
A
L
S
----------------
S
K
V
A
Q
---
A
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
29.66
14%
27
- C5 -
2DM9
-
VATE_PYRHO
A:
[137-192]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
E
E
I
K
S
E
L
G
--
D
V
S
I
E
-
L
---------
G
E
T
VD
T
M
G
G
V
I
V
E
T
ED
G
--
R
--
I
---
R
I
D
N
-
T
F
E
A
R
M
E
R
-
F
E
G
E
I
R
----------------
S
T
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
29.30
18%
-22
* C5 *
3CWX
-
?
A:
[97-150]
--------------------------------------------------------------------------------------------------------------------
I
Q
I-
N
P
E
V
K
D
F
F
T
F
---------
K
S
I
S
T
T
N
K
Q
R
C
F
L
--
S
L
R
G
E
--
T
------
R
----
E
------
I
L
C
D
N
K
L
Y
N
M
L
L
A
V
F
N
S
Y
------
D
P
---
N
D
L
L
K
H
-----------
I
S
T
V
E
-
S
L
K
K
I
F
Y
T
I
T
C
E
----
A
V
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
23.27
6%
5
- C5 -
2JR5
-
Y2471_VIBCH
A:
[22-59]
---------------------------------------------------------------
D
---------
V
V
I
M
P
F
F
E
E
C
F
D
S
L
T
E
S
-----------
E
Q
D
---
D
F
V
A
L
----
L
E
S
D
D
P
D
L
F
A
W
V
-----------
M
G
H
G
R
C
E
N
L
G
L
A
A
--
M
V
D
K
I
V
A
H
N
L
S
K
V
R
L
E
H
H
H
H
------
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
23.22
10%
63
- C5 -
2AYA
-
A:
[64-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
H
L
N
N
R
G
A
Q
Q
K
----
L
A
E
A
L
S
M
L
K
G
-
S
T
V
E
L
T
-
I
---------
V
E
D
--
D
N
P
A
V
R
T
P
L
--
E
--
W
--
R
---
Q
A
I
Y
-
E
E
K
L
--
A
Q
-
A
R
E
S
I
I
----------------
A
D
N
N
I
---
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
12.64
12%
109
- C5 -
3LG8
-
VATE_METJA
A:
[167-203]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
G
G
C
I
I
E
T
--
A
DG
L
--
K
---
S
L
D
N
-
S
L
E
A
I
F
N
R
-
N
L
N
V
I
R
----------------
A
R
I
T
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------