@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_1255: (2015-12-22 )
MAKIELLAKFTQIALPNSHPLLKKVLNYAKKHFSQCHMLSSSLLILNDTECFKKNYLLNWVYHALECAHEKDISMHSLEEILQKSHLPIRIKIMAQNTLLEKIEVKVLTFGAEYALFITKHPIAKRFLRQKFSGCVFLETQDELHIRGDSERFWELIVTLNENRIVHNACLDFIYPNGFGKDSYTTMAERKLKECYKALGFIKHENFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQEAYSHIKKHA
Atome Classification :
(20 SA)
---.........10.------------...-------....20........30--........40........50........-------60...------------.....70........80--------.........90.---------.......100----------........110.........120...--------....130......----.140.......150.......160-...----.....170.......180.......--190....---------------...------------.200.--.---.-....210-........220.....-----------..230...--......240........250.-----------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---M
A
K
I
E
L
L
A
K
F
T
Q
------------IAL-------PNS
H
P
L
L
K
K
V
L
N
Y
A
K
K
--
H
F
S
Q
C
H
M
LSS
S
L
L
I
LN
D
T
E
C
F
K
K
N
Y
L
L
N
-------
W
V
Y
H
A
------------
L
E
C
A
H
EKDI
S
M
H
S
L
E
E
---------
I
L
Q
KSHL
P
I
R
I
K
---------
I
M
AQNT
L
L
E
-----------
K
I
E
V
K
V
L
T
F--GA
E
Y
A
L
F
I
TK
H
P
I
A
K
--------
R
F
L
R
Q
KFS
G
C
V
F
L
----ETQ
D
E
L
H
I
RGD
S
E
R
F
W
E
L
I
V
T
LN--EN
R
----
I
V
H
N
A
C
L
D
FIYPNGFGKD
S
Y
T
T
M
A
E
--
R
-
K
L
K
E
C
---------------
Y
K
A
------------
L
G
FIK--H---E-
N
F
S
E
V
K
--
K
R
Y
L
E
L
A
K
TYHPDLC
D
-----------
L
K
E
--
K
K
A
--
L
Y
A
K
R
F
A
-
I
I
Q
E
A
Y
S
H
I
K
KHA-----------------------------------------------------------
55
Fugue
74.88
16%
-98
* C5 *
4RHJ
1
?
A:
[19-318]
SHM
F
S
K
F
L
M
N
V
K
G
V
T
PRGSDWANRLGP
V
A
L
F
G
Y
G
A
GM
P
R
R
A
P
L
L
D
F
F
L
Q
S
P
R
D
CD
H
Y
A
E
L
T
I
H
D
K
G
-----
P
I
E
C
P
P
E
T
V
M
F
M
-------
P
V
L
N
C
GQMLDEAAGTET
P
T
S
D
E
W
Y
L
G
S
L
E
A
S
T
E
---------
L
L
E
K
G
Y
V
P
V
S
V
G
GDG
S
A
T
L
S
M
V
E
A
Y
K
R
L
F
P
-----------
S
D
D
I
V
I
V
H
F
--
S
A
R
P
S
V
S
D
P
R
S
P
L
R
V
--------
L
L
D
K
G
L
L
K
G
V
V
S
V
GNRQ
V
S
S
E
D
R
K
V
R
K
L
H
K
M
F
Y
M
D
M
R
D
I
R
--
N
D
Y
----
P
V
F
I
S
I
D
A
S
V
L
D
P
A
F
A
P
A
V
D
S
P
V
A
G
--
G
L
S
T
R
D
L
---------------
L
H
I
------------
M
N
G
I
R
--
G
---
P
-
K
V
V
G
-------
I
D
V
Y
G
-
Y
N
P
D
L
D
V
-----------
Y
R
K
D-
N
V
G
--
L
T
A
I
A
L
S
K
I
I
K
E
G
I
L
K
----------------------------------------------------------------
58
Fugue
70.50
15%
-68
- C3 -
4I5J
1
A:
[8-279]
---
N
H
H
D
D
A
S
K
F
I
C
L
------------
L
A
K
-------
P
N
C
S
S
L
E
Q
E
D
F
I
P
L
L
Q
--
D
V
V
D
T
H
---
P
G
L
T
F
L
K
D
A
P
E
F
H
S
R
Y
I
T
T
-------
V
I
Q
R
I
------------
F
Y
T
V
N
R
S
W
S
G
K
I
T
S
T
E
---------
I
R
K
S
N
F
L
Q
T
L
A
L
---------
L
E
E
E
E
D
I
N
Q
ITDYFS
Y
E
H
F
Y
V
I
Y
C
K
F
W
E
L
--
D
T
D
H
D
L
Y
I
S
Q
A
D
L
S
R
YNDQASS
S
R
I
I
E
R
I
F
S
G
A
V
------
T
K
E
G
R
M
----
S
Y
A
D
F
V
W
F
L
I
S
E
E
D
K
R
N
P
----
T
S
I
E
Y
W
F
R
C
M
D
V
D
G
D
G
V
L
S
M
Y
E
L
E
Y
F
Y
E
-
E
Q
C
E
R
---------------
M
E
A
------------
M
G
-
I
E
--
P
---
L
-
P
F
H
D
L
L
--
C
Q
M
L
D
L
V
K
P
A
V
D
G
K
I
T
-----------
L
R
D
--
L
K
R
C
R
M
A
H
I
F
Y
D
-
T
F
F
N
L
E
K
Y
L
D
H
-------------------------------------------------------------
33
HHSearch
64.74
35%
-62
- C6 -
2QSA
1
DNJ2_CAEEL
A:
[13-75]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
E
N
C
---------------
Y
D
V
------------
L
E
V
N
R
--
E
---
E
F
D
K
Q
K
L
A
--
K
A
Y
R
A
L
A
R
K
H
H
P
D
R
V
K
-----------
N
K
E
--
E
K
L
--
L
A
E
E
R
F
R
-
V
I
A
T
A
Y
E
T
L
K
D
D
E
-----------------------------------------------------------
2
PsiBlast_PDB
63.11
39%
-72
- C6 -
2QSA
1
DNJ2_CAEEL
A:
[14-73]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
N
C
---------------
Y
D
V
------------
L
E
-
V
N
--
R
---
E
-
E
F
D
K
Q
K
L
A
K
A
Y
R
A
L
A
R
K
H
H
P
D
R
V
K
-----------
N
K
E
--
E
K
L
--
L
A
E
E
R
F
R
-
V
I
A
T
A
Y
E
T
L
K
D
D
E
-----------------------------------------------------------
37
HHSearch
59.82
28%
-74
- C6 -
2YS8
-
A:
[26-82]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
D
S
---------------
W
D
M
------------
L
G
V
K
P
--
G
---
A
-
S
R
D
E
V
N
--
K
A
Y
R
K
L
A
V
L
L
H
P
D
K
C
V
-----------
A
------
P
--
G
S
E
D
A
F
K
-
A
V
V
N
A
R
T
A
L
L
K
N
I
-----------------------------------------------------------
47
HHSearch
57.65
28%
-78
* C6 *
3UCS
-
CBPA_ECOLI
C:
[3-60]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
K
D
Y
---------------
Y
A
I
------------
M
G
V
K
P
--
T
---
D
-
D
L
K
T
I
K
--
T
A
Y
R
R
L
A
R
K
Y
H
P
D
V
S
K
-----------
E
------
P
--
D
A
E
A
R
F
K
-
E
V
A
E
A
W
E
V
L
S
D
E
Q
-----------------------------------------------------------
35
HHSearch
57.45
28%
-48
- C6 -
2DMX
-
DNJB8_HUMAN
A:
[7-66]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
M
A
N
Y
---------------
Y
E
V
------------
L
G
V
Q
A
--
S
---
A
-
S
P
E
D
I
K
--
K
A
Y
R
K
L
A
L
R
W
H
P
D
K
N
P
-----------
D
N
----
K
E
--
E
A
E
K
K
F
K
-
L
V
S
E
A
Y
E
V
L
S
D
S
K
-----------------------------------------------------------
28
HHSearch
57.09
17%
-39
- C6 -
2GUZ
-
TIM16_YEAST
B:
[3-59]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
E
S
---------------
C
K
I
------------
L
N
I
E
E
--
S
KGD
L
-
N
M
D
K
I
N
--
N
R
F
N
Y
L
F
E
V
N
D
K
E
K
G
G
-----------
S
-----------
F
Y
L
Q
S
-
K
V
Y
R
A
A
E
R
L
K
W
E
L
-----------------------------------------------------------
50
Fugue
55.98
14%
-43
* C4 *
4F3V
6
ECCA1_MYCTU
A:
[1-275]
G
H
M
T
D
R
L
A
S
L
F
E
S
A
V
------------
S
M
L
-------
P
M
S
E
A
R
S
L
D
L
F
T
E
I
T
N
--
Y
D
E
S
A
C
D
A
W
I
G
R
I
R
C
G
D
T
D
R
V
T
L
F
R
A
W
Y
-------
S
R
R
N
F
------------
G
Q
L
S
G
S
V
Q
I
S
M
S
T
L
N
A
---------
R
I
A
I
G
G
L
Y
G
D
I
T
---------
Y
P
V
T
S
----------------
P
L
A
I
T
M
G
F
--
A
A
C
E
A
A
Q
G
N
Y
A
D
A
M
E
--------
A
L
E
A
A
P
V
A
G
S
E
H
L
----
V
A
W
M
K
A
V
V
Y
G
A
A
E
R
W
T
D
V
I
D
Q
V
K
--
S
A
G
KWPD
K
F
L
A
G
A
A
G
V
A
H
G
V
A
A
A
N
L
A
L
F
T
E
A
E
--
R
-
R
L
T
E
A
N
D
SPAGEAC
A
R
A
I
A
W
Y
L
A
------------
M
A
R
R
S
--
Q
---
G
-
N
E
S
A
A
V
--
A
L
L
E
W
L
Q
T
T
H
P
E
P
K
V
A
-----------
A
A
L
--
K
D
P
--
S
Y
R
L
K
T
T
-
T
A
E
Q
I
A
S
R
A
D
P
W
D
PGSVV------------------------------------------------------
59
Fugue
54.58
16%
-53
- C5 -
4K7J
4
?
A:
[26-375]
-------
G
L
L
T
D
Y
G
N
------------
A
S
A
-------
S
P
W
M
K
K
L
Q
S
V
A
Q
G
S
G
E
--
T
F
R
I
L
Q
I
G
D
S
H
T
A
G
D
F
F
T
D
S
L
R
K
R
L
Q
K
T
WGDGGIG
W
V
Y
P
A
NVKGQRM-----
A
A
V
R
H
N
G
N
W
Q
S
L
T
S
R
N
NTGDFPLGG
I
L
A
H
T
G
S
G
G
S
M
T
---------
L
T
A
S
D
G
I
A
S
-----------
K
Q
R
V
S
L
F
A
K
PL
L
A
E
Q
T
L
T
V
N
G
N
T
V
S
A
-------------
N
G
G
G
W
Q
V
L
----
D
T
G
A
A
L
P
L
T
I
H
T
E
M
P
W
D
I
G
F
I
N
I
--
E
N
P
-----
A
G
G
I
T
V
S
A
M
G
I
N
G
A
Q
L
T
Q
W
S
K
W
R
A
--
D
-
R
M
N
D
L
---------------
A
Q
T
GAD
L
V
I
L
S
Y
G
T
N
E
A
F
N
N
--
N
---
I
-
D
I
A
D
T
E
--
Q
K
W
L
D
T
V
R
Q
I
R
D
S
L
P
A
A
G
I
L
I
I
G
A
PES
L
K
N
--
T
L
G
--
V
C
G
T
R
P
V
-
R
L
T
E
V
Q
Q
M
Q
R
R
V
A
R
Q
G
Q
T
M
F
W
S
W
Q
N
A
M
GGICS
M
K
N
W
L
N
Q
GWAAKDGVHFS
A
K
G
Y
R
R
A
A
E
M
L
A
D
S
L
E
E
L
V
R
S
A
41
HHSearch
54.30
26%
-42
- C6 -
2CUG
-
DJC16_MOUSE
A:
[11-72]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
S
--
A
-
L
D
F
D
P
---------------
Y
R
V
------------
L
G
V
S
R
--
T
---
A
-
S
Q
A
D
I
K
--
K
A
Y
K
K
L
A
R
E
W
H
P
D
K
N
K
-----------
D
------
P
--
G
A
E
D
R
F
I
-
Q
I
S
K
A
Y
E
I
L
S
N
E
E
-----------------------------------------------------------
40
HHSearch
53.90
31%
-49
- C6 -
2DN9
-
A:
[5-63]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
G
D
Y
---------------
Y
Q
I
------------
L
G
V
P
R
--
N
---
A
-
S
Q
K
E
I
K
--
K
A
Y
Y
Q
L
A
K
K
Y
H
P
D
T
N
K
-----------
D
D
-----
P
--
K
A
K
E
K
F
S
-
Q
L
A
E
A
Y
E
V
L
S
D
E
V
-----------------------------------------------------------
39
HHSearch
53.78
30%
-32
- C6 -
2OCH
-
?
A:
[3-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
T
G
Y
---------------
Y
D
V
------------
L
G
V
K
P
--
D
---
A
-
S
D
N
E
L
K
--
K
A
Y
R
K
M
A
L
K
F
H
P
D
K
N
P
-----------
D
----------
G
A
E
Q
F
K
-
Q
I
S
Q
A
Y
E
V
L
S
D
E
K
-----------------------------------------------------------
48
HHSearch
53.68
27%
-47
- C6 -
2YUA
-
DJC30_HUMAN
A:
[15-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
R
T
A
L
---------------
Y
D
L
------------
L
G
V
P
S
--
T
---
A
-
T
Q
A
Q
I
K
--
A
A
Y
Y
R
Q
C
F
L
Y
H
P
D
R
N
S
-----------
G
S
-----
A
--
E
A
A
E
R
F
T
-
R
I
S
Q
A
Y
V
V
L
G
S
A
T
-----------------------------------------------------------
34
HHSearch
52.18
25%
-34
- C6 -
2EJ7
-
DNJB3_HUMAN
A:
[7-66]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
M
V
D
Y
---------------
Y
E
V
------------
L
D
V
P
R
--
Q
---
A
-
S
S
E
A
I
K
--
K
A
Y
R
K
L
A
L
K
W
H
P
D
K
N
P
-----------
E
N
K
----
E
--
E
A
E
R
R
F
K
-
Q
V
A
E
A
Y
E
V
L
S
D
A
K
-----------------------------------------------------------
29
HHSearch
51.82
30%
-54
- C6 -
1HDJ
-
DNJB1_HUMAN
A:
[2-57]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
Y
---------------
Y
Q
T
------------
L
G
L
A
R
--
G
---
A
-
S
D
E
E
I
K
--
R
A
Y
R
R
Q
A
L
R
Y
H
P
D
K
N
K
-----------
E
------
P
--
G
A
E
E
K
F
K
-
E
I
A
E
A
Y
D
V
L
S
D
P
R
-----------------------------------------------------------
21
PsiBlast_CBE
51.66
34%
-11
- C6 -
4J7Z
1
DNAJ2_THET8
F:
[4-54]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
Y
---------------
Y
A
I
------------
L
G
V
P
R
--
N
---
A
-
T
Q
E
E
I
K
--
R
A
Y
K
R
L
A
R
Q
Y
H
P
-----------------
E
--
A
E
------
E
K
F
K
-
E
I
N
E
A
Y
A
V
L
S
D
P
E
-----------------------------------------------------------
38
HHSearch
51.51
17%
-48
- C6 -
1FPO
-
HSCB_ECOLI
A:
[2-64]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
---------------
F
T
L
------------
F
G
L
P
A
RY
Q
---
L
-
D
T
Q
A
L
S
--
L
R
F
Q
D
L
Q
R
Q
Y
H
P
D
K
F
A
-----------
S
G
S
Q
A
E
Q
L
--
A
A
V
Q
Q
S
A
-
T
I
N
Q
A
W
Q
T
L
R
H
P
L
-----------------------------------------------------------
49
HHSearch
51.29
26%
-60
- C6 -
2CTP
-
A:
[5-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
G
D
Y
---------------
Y
E
I
------------
L
G
V
S
R
--
G
---
A
-
S
D
E
D
L
K
--
K
A
Y
R
R
L
A
L
K
F
H
P
D
K
N
H
-----------
A
------
P
--
G
A
T
E
A
F
K
-
A
I
G
T
A
Y
A
V
L
S
N
P
E
-----------------------------------------------------------
5
PsiBlast_PDB
50.66
34%
-10
- C6 -
4J7Z
-
DNAJ2_THET8
A:
[4-54]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
Y
---------------
Y
A
I
------------
L
G
V
P
R
--
N
---
A
-
T
Q
E
E
I
K
--
R
A
Y
K
R
L
A
R
Q
Y
H
P
D
V
N
K
-----------
S
P
E
--
A
E
------
E
K
F
K
-
E
I
N
E
A
Y
A
V
L
S
D
P
E
-----------------------------------------------------------