@TOME V2.3
(Nov 2016)

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3D Common Core:

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Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : Lmo0017: (2016-03-11 )
MKSRKKGIILVLSVILIFSIGLLVNNLMTNNKDTAKPKKKTVAAVKKKKETPPKPKEPFNIDFTGDIMFDWDLRPVLAEKGMDYPFNNVREELKSSDYTFVDLETAITTRTKKVPYQEFWIKSDPSSLTALKNAGVDMVNISNNHILDYYEDGLLDTTAALRANNLAYVGAGKNEDEAYQLKVADIKGNKVGFMSFCHFFPNTGWIADEDTPGVTNGYDLNLVEEKIKEERAKNKDIDYMVVYFHWGVEKTNTPVDYQTQYVKKLVDDNLVDAIVASHPHWLQGFEVYKDVPIAYSLGNFLFPDYVSGHSAETGIYKLNFDQGKVTAHFDPGIISGNQINMLEGSSKTAQLNYLQSISPNATINSNGDISAK

Atome Classification :

(20 SA) -------------------------------------------------------.........10.---.......20........30.-......--.40........50........60........70.....-.---.-.------80.........90....--....--.--100.......110....-..---.---120------------.--------.......130..------.....140....-...150..-.----------------------...--...160.....--..170.....------.-----.180.-..-----.-----.----..----.190.......200.........210.......220-...-.---...230--....---------------...240....--...250---.--..------..---.-------.----.-------.260...-.--...270.......280.--..---------------..-..290----------.....---------....300.--------.--....----.----.310-------......-..320.-.-.-....330.....--..340....----...350.......360.......370-
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) -------------------------------------------------------MKSRKKGIILVL---SVILIFSIGLLVNNLMTNNK-DTAKPK--KKTVAAVKKKKETPPKPKEPFNIDFTGDIMFDWDLRPV-L---A-E------K-GMDYPFNNVR-EELK--SSDY--T--FVDLETAITTRTKKVPY-QE---F---W-I------------K--------SDPSSLTALKNA------GVDMVNISNNHI-LDYY--ED-G----------------------LLD--TTAALRANNLA--YVGAGKNEDE------A-----YQL-K-VA-----D-----I----KG----NKVGFMSFCHFF--PNTGWIADEDTPGVTNGYDLNL-VEE-K---IKEERA--KNKD---------------IDYMVVYFHW--GVEK-----T--NT------PV---D-------Y----Q-------TQYVKKL-V--DDNLVDAIVASHPHWLQ--GF---------------EV-YKD------------VPIAY---------SLGNF-LF--------P--DYVS----G----HSA--------ETGIYK-LNFDQG-K-V-TAHFDPGIISGN--QINMLEGSS----KTAQLNYLQSISPNATINSNGDISAK-
22 HHSearch 85.4921% -65 - C4 -2Z06 ? A:[1-193] -----------------------------------------------------------------------------------------------------------------------MRVLFIGDVMAEPGLRA------------------VGLHLPDIR----D--RYDL--V--IANGENAARGKG---------------------------------------LDRRSYRLLREA------GVDLVSLG-NHA-WDHK--EVYA----------------------LLE--SEPVVRPLNYP--PGTPGK-----------------GF-W-RL-----E-----V----GG----ESLLFVQVMGRI--F-MDP----------LDDPFRA-L--------DR-LL--EEEK---------------ADYVLVEVHA--EA-------------------T---S-------E----K-------MALAHY--L--DGR-ASAVLGTHTHVPTLDAT---------------RL-PKG------------TLYQT---------DVGM---------------------------------------------------------------------------------------------------------------
41 Fugue 78.5515% -40 - C4 -1T71 Y349_MYCPN A:[1-281] -------------------------------------------------------------------------------------------------------------------MMNSIKFIFLGDVY-------------G-K------A-GRNIIKNNLA-QLKS--KYQA--D--LVIVNAENTTHGKGL-------------------------------------SLKHYEFLKEA------GVNYITMGNHTWFQKLD--LA-V----------------------VIN--KKDLVRPLNLD--TSFAFHNLGQ------G-----SLV-F-EF-----N-----------K----AKIRITNLL---------------GTSVPLPFKTTN-PFK-V---LKELIL--KRDC----------------DLHIVDFHA--ETTS-----E--KN------AF---C-------M----A-------F-----------DGYVTTIFGTHTHVPS--AD---------------LR-ITP------------KGSAYIT-------DVGMCGPG--------F--GSVI----G----ANP--------EQSIRLFCAGSRE-H-F-EVSKCGAQLNGV--FFEVDVNTK----KVIKTEAIRIVEDDPRYLKQDYFNLI-
44 Fugue 75.3915% -14 - C4 -1UTE PPA5_PIG A:[3-304] -------------------------------------------------------PTPI-------L---RFVAVGDWG---------GV-PNAPFH--TAREMANAKAIATTVKTLGADFILSLGDNFYF--------------------T-GVHDAKDKRF-QETF--EDVF--S------DPSLRNVPWHVLA-GN---H---D-H------------L--------GNVSAQIAYSKI------SKRWNFPSPYYR-LRFK--IP-R----------------------SNV--SVAIFMLDTVT--LCGNSDDFVS-----------------------------------------------------------------QQPERPRNLALAR-TQL-A---WIKKQL--AAAK---------------EDYVLVAGHY--PVWS-----IAEHG------PT---H-------C----L-------VKQLLPL-L--TTHKVTAYLCGHDHNLQ--YL---------------QD-ENGL-----------GFVLS---------GAGNF-MD--------P--SKKH----L----RKV--------PNGYLR-FHFGAE-N-S-LGGFAYVEITPKEMSVTYIEASG----KSLFKTKLPRRA---------------
26 HHSearch 75.0015% -48 - C4 -2Z1A ? A:[28-245] ---------------------------------------------------------------------------------------------------------------------FTLTLVHTNDTHAHLEPVEL-TL--SGE------K-TPVGGVARRV-ALFD--RVWA------RAKNPLFLDAGDVFQG-TL---YF--N-Q------------Y--------RGLADRYFMHRL------RYRAMALG-NHE-FDLG--PG-P----------------------LAD--FL---KGARFK--VVSANVDASREPRLKGL-----FAPYA-VV-----V-----V----GG----ERVGIIGLTTPD--T-REISNP--GPTVAFLDPYES-AQK-A---VYE-L---LAKG---------------VNKIVVLSHL--GYGE-----D------------------------------------LKLARRL-----VG-VQVIVGGHSHTLL--GS------------------------------------------------------------------------------------------------------------------------------------------------------------------
21 HHSearch 74.4516% -58 - C4 -1T71 Y349_MYCPN A:[2-275] --------------------------------------------------------------------------------------------------------------------MNSIKFIFLGDVYGKAGRNI------------------IKNNLAQLK-SKY---QADL--V--IVNAENTTHGKG---------------------------------------LSLKHYEFLKEA------GVNYITMG-NHT-WFQKLDLA-V----------------------VIN--KKDLVRPLNLD--TSFAFHN--L------G-----QGS-L-VF-----E-----F----NK----AKIRITNLLGTS--VPLPF---------KTTNPFKV-LKE-L---ILK------R-D---------------CDLHIVDFHA--ETTS-----------------------------E----K-------NAFCM-A-F--DGY-VTTIFGTHTHVPS--AD---------------LR-ITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLF-CA--------GSREHFEVSKCG----AQL--------NGVFFE-VDVNTK---K-VIKTEAIRIVED--DPRYLKQ---------------------------------
28 HHSearch 72.4815% -48 - C4 -3IVE ? A:[4-250] --------------------------------------------------------------------------------------------------------------------AKDVTIIYTNDLHAHVEPYKV-PWIAD-G------K-RDIGGWANIT-TLVK--QE----K--AKNKATWFFDAGDYFTG-PYI--S---S-L------------T--------KGKAIIDIMNTM------PFDAVTIG-NHE-FDHG--WD-N----------------------TLL-----QLSQAKFP--IVQGNIFYQN------SSKSFWDKPYT-II-----E-----K----DG----VKIGVIGLHGVF--AFNDTVSAATRVGIEARDEIKW-LQR-Y---IDE-L----KGK---------------VDLTVALIHE--GVPA-----R--QS------SM----DVRRALDK----D-------IQTASQ-----VKG-LDILITGHAHVGT--PE---------------PIKVGN------------TLIL-----------------------------------------------------------------------------------------------------------------------------
23 HHSearch 69.5115% -55 - C4 -1T70 - ? A:[1-184] -----------------------------------------------------------------------------------------------------------------------MRVLFIGDVFGQPGRRV------------------LQNHLPTI----RP--QFDF--V--IVNMENSAGGFG---------------------------------------MHRDAARGALEA------GAGCLTLG-NHA-WHHKD-IY-P----------------------MLSEDTYPIVRPLNYA--DPG-----TP------G-----VGW-R-TF-----D-----V----NG----EKLTVVNLLGRV--F-ME-------A---VDNPFRT-MDA-L---LER------D-D---------------LGTVFVDFHA--EATS-----E----------------------------K-------EAMGW-H-L--AGR-VAAVIGTHTHVPT--AD---------------TR-IL----------------------------------------------------------------------------------------------------------------------------------------------
33 HHSearch 69.3414% -45 - C4 -3THO RAD50_THEMA B:[1-262] -----------------------------------------------------------------------------------------------------------------------MKILHTSDWHLGVTSWTS-SRPVDRR------E-ELKKALDKVV-EEAEKREVDL--I--L--------LTGDLLHSRNN---P---S-V------------V--------ALHDLLDYLKRMMR----TAPVVVLPGNQD-WKGL--KL-F-----------------------GN------F---V-T--SISSDITFVM------S-----FEP-V-DV-----EA----K----RG----QKVRILPFPYPD--E-S------KNEG--DF--RFF-LES-R---LNK-LYEEALKK---------------EDFAIFMGHF--TVEG-----L--AG-------------------R----E-------IIINRAL-I--PSV-VDYAALGHIHSFR--EI---------------QK---Q------------PLTIY---------P-GSL-IR--------I--DFGE----E----AD---------EKGAVF-VELKRGEP-P-RYERIDAS----------------------------------------------
42 Fugue 67.7512% -27 - C4 -1USH ? ?:[26-362] ----------------------------------------------------------YEQDKTYKI---TVLHTNDHHGHFWRNEYGEY-GLAAQK--TLVDGIRKEVAAEGG---SVLLLS-GGDINTG-----------------------------------------------------VPESDLQD---------------------------------------AEPDFRGMNLV------GYDAMAIG-NHE-FDNP--LT-V----------------------LRQ--QEKWAKFPLLSANIYQKSTGERL------F-----KPW-A-LF-----K-----R----QD----LKIAVIGLT-------TDDTAKIGNPEYFTDIEFRK-PAD-E---AKLVIQ--ELQQTEK------------PDIIIAATHM--GHYD-----N--GE------HG---S-------N----A-------PGDVEMA-RALPAGSLAMIVGGHSQDPV--CM---------------AA-ENK------------KQVDY---------VPGTP-CK--------P--DQQN----G----IWIVQAHEWGKYVGRAD-FEFRNG-E-M-KMVNYQLIPVNL--KKRVLYTPE----IAENQQMISLLSPFQNKGKAQLEV---
45 Fugue 67.5215% -19 * C2 *2OCC - COX1_BOVIN A:[1-514] MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAP-DMAFPRMNNMSFWLLPPSFLLLLASSMVE-----AGAGTGWTVYPP-L---A-GNLAHAGA-SVDLTIFSLH-LAGV--SSIL--G--AINFITTIINMKPPAMS-QYQTPL---F-V------------W--------SVMITAVLLLLSLPVLAAGITMLLTDRNLN-TTFF--DP-AGGGDPILYQHLFWFFGHPEVYILIL--PGFGMISHIVT--YYSGKKEPFG------Y-----MGM-V-WA-----M-----M----SI----GFLGFIVWAHHM--FTVGMDVDTRAYFTSATMIIAIPTGV-K---VFSWLA--TLHGGNIKWSPAMMWALGFIFLFTVGGLT--GIVL-----A--NS------SL---D-------I----VLHDTYYVVAHFHYV-L--SMGAVFAIMGGFVHWFP--LFSGYTLNDTWAKIHFAIM-FVG------------VNMTF---------FPQHF-LGLSGMPRRYS--DYPD----A----YTM--------WNTISS-MGSFIS-L-T-AVMLMVFIIWEA--FASKREVL-TVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK
25 HHSearch 66.3416% -32 - C4 -3JYF ? A:[4-252] ------------------------------------------------------------------------------------------------------------------AATVDLRIMETTDLHSNMMDFDY-Y---KDA------A-TEKFGLVRTA-SLIE--QARA------EVKNSVLVDNGDVIQG-SP---LG--D-Y------------MAAKGLKEGDVHPVYKAMNTL------NYAVGNLG-NHE-FNYG--LD-F----------------------LHK--ALA---GAKFP--YVNANIIDAKTGKP--M-----FTP-YLIQDTRVVD-----S----DGQIHTLRIGYIGFVPPQ--I-MTWDKANLNGKVTVNDITET-ARK-Y---IPE-M---RAKG---------------ADVVVVVAHS--GLSA-----D--PY------QAMA-E-------N----S-------VYYLSQ-----VPG-VDAIMFGHAHAVF--PG---------------KD-F-----------------------------------------------------------------------------------------------------------------------------------------------
34 HHSearch 65.6613% -55 * C4 *3AV0 MRE11_METJA A:[18-251] --------------------------------------------------------------------------------------------------------------------GSHMMFVHIADNHLGYRQYNL-DD--R-E------K-DIYDSFKLCI-KKILEIKPDV--V--LH--------SGDLFND-LR---PPVKA-L------------R--------IAMQAFKKLHEN------NIKVYIVAGNHE-MPRR--LG-E----------------------E-S--PLALLKD-YVK--ILD--------------------GK-D-VI-----N-----V----NG----EEIFICGTYYHK--K---SK---R------EEMLDK-LKN-F---ESE------AKN---------------YKKKILMLHQ--GINP-----Y---I------PL---D-------Y----E---------L-EHF-D--LPK-FSYYALGHIHKRI--LE---------------R--FND------------GILAY---------S-GST-EI--------I--YRNE----YEDYKKEG---------KGFYL-VDFSG------------------------------------------------------------
24 HHSearch 65.3917% -35 - C4 -3GVE NTPES_BACSU A:[8-261] -------------------------------------------------------------------------------------------------------------------PQVHLSILATTDIHANMMDYDY-YS--D-K------E-TADFGLARTA-QLIQ--KHRE------QNPNTLLVDNGDLIQG-NP---LG--E-YAVKYQKDDIISGT--------KTHPIISVMNAL------KYDAGTLG-NHE-FNYG--LD-F----------------------LDG--TIK---GADFP--IVNANVKTTSGEN---R-----YTPYV-IN-----EKTLIDENGNEQK----VKVGYIGFVPPQ---IMTWDKKNLEGQVQVQDIVES-ANE-T---IPK-M---KAEG---------------ADVIIALAHT--GIEK-----Q--AQ------SS---G-------A----E-------NAVFDLATK--TKG-IDAIISGHQHGLF--PS---------------AE-YAG---------------------------------------------------------------------------------------------------------------------------------------------
30 HHSearch 59.9913% -45 - C4 -3C9F ? A:[9-271] ----------------------------------------------------------------------------------------------------------------RNLTWNDINFVHTTDTHGWYSGHIN-Q---P-L------YHANWGDFISFT-THMR--RIAH-----SRNQDLLLIDSGDRHDG-NG---L---SDI------------TSP------NGLKSTPIFIKQ------DYDLLTIG-NHE-LYLW--EN-S----------------------KQE--YETVVNHFQDK--YVCSNVDIRLDNG---LFVPLGLKY-K-YFTT---P-----I----RG----IRVMAFGFLFDF--K--RF-----NSGTRVTPMAET-IHEPW---FQEAL----KHE---------------VDLIIIVGHT--PISH-----N--WG------EF---Y-------Q----V-------HQYLRQF-F--PDT-IIQYFGGHSHIRD--FT---------------VF-DSL------------STGLQ---------S------------------------------------------------------------------------------------------------------------------
27 HHSearch 59.6410% -38 - C4 -1HP1 USHA_ECOLI A:[4-234] ------------------------------------------------------------------------------------------------------------------DKTYKITVLHTNDHHGHFWRNE---------------Y--GEYGLAAQK-TLVD--GIRK--EVAAEGGSVLLLSGGDINTG-VPE--S---D-L------------Q--------DAEPDFRGMNLV------GYDAMAIG-NHE-FDNP--LT-V----------------------LRQ--QE---KWAKFP--LLSANIYQKSTGER--L-----FKPWA-LF-----K-----R----QD----LKIAVIGLTTDD--T-AKIGNPEYFTDIEFRKPADE-AKL-V---IQE-LQ--QTEK---------------PDIIIAATHM--GHYD-----N--GE------HGSNAP-------G----D-------VEMARAL-P--AGS-LAMIVGGHSQDPV--CM------------------------------------------------------------------------------------------------------------------------------------------------------------------
47 Fugue 58.0512% -24 - C4 -2DXN ? A:[1-271] ------------------------------------------------------------------M---LLAHISDTHFRSRGEKLYGFIDVNAAN--ADVVSQLNALRERPD------AVVVSGD-----------I---V-N------C-GRPEEYQVAR-QILG------------------------------------------------------------------------SL------NYPLYLIPGNH------------------------------------D--DKALFLEYLQP--LCPQLGSDAN------N-----MRC-A-V------D-----D----FA----TRLLFI---------------DSSRAGTSKGWLTDE-TIS-W---LEAQLF--EGGD---------------KPATIFMHHP--PLPLGNAQMD--PI------AC---E-------N----G-------HRLLALV-E--RFPSLTRIFCGHNH-SL--TM---------------TQ-YRQ------------ALIST---------LPGTV-HQ---------------------------------------VP-YCHEDT-D-P-YYDLSP---ASC--LMHRQVGEQ----WVSYQHSLAHYAGPWLYDENISCPT--
29 HHSearch 57.3410% -43 - C4 -2WDC ? A:[78-304] ------------------------------------------------------------------------------------------------------------------RGTPLAYLLSYVDFVELART-----------------F-GPIGGMGALT-ALIR--DQKARVE--AEGGKALVLDGGDTWTN-SG---LS--L-L------------T--------RGEAVVRWQNLV------GVDHMV-S-HWE-WTLG--RE-R----------------------VEE--L---LGLFRGE--FLSYNIVDDL------FGDPL-FPAYR-IH-----R-----V----GP----YALAVVGASYPY--V-KVSHPESFTEGLSFALDERR-LQE-A---VDK-A---RAEG---------------ANAVVLLSHN--GMQL-----D------------------------------------AALAERI-----RG-IDLILSGHTHDLT--PR---------------PWRVGK------------TWIVA----------------------------------------------------------------------------------------------------------------------------
48 Fugue 54.6910% -21 - C4 -2NXF ADPRM_DANRE A:[3-322] ----------------------------------------------------------DPVFTFGLI---ADVQYADIEDGENYLRTRRR-YYRGSA--DLLRDAVLQWRRERVQ-----CVVQLGDI-----IDGH-N---R-R------R-DASDRALDTVMAELD--ACSV--D--VHHVWGNHEFYNFSRPS-LL---S---S-R------------L--------NSAQGSDLIGDD------IYAYEFSPAPNF-RFVL--LD-A----------------------Y-D--LSVIGREEESE--KHTHSWRILT------Q-----HNH-N-LQ-----D-----L----NL----PPVSVGLEQRFV--KFNGGF---------SEQQLQW-LDA-V---LTLSDH--KQE------------------RVLIFSHL--PVHP-----C--AA------DP---I-------CLAWNH-------EAVLSVL-R--SHQSVLCFIAGHDH-DG--GR---------------CT-DSS--------------------------GAQHI-TL--------E--GVIE----T----PPH--------SHAFAT-AYLYED-RMVMKGR-----------------GRV----EDLTITYS-------------------
46 Fugue 53.4117% 3 - C2 -4HNE P4K2A_HUMAN A:[2-384] --------------------------------------------------------------------------------------PLGS-PEFAAQ--AQALAAQAAAAAHAAQAHRERN-EFPEDPEFEAVVRQAEL---A-I------E-RCIFPERIYQ-G--S--SGSY--F--VKDPQGRIIAVFKP-KN-EE---P---Y-G------------H--------LNPKWTKWLQKF------GRD-CLVLNQGY-LSEA--GA-S----------------------LVD--QKLELNIVPRT--KVVYLASETF------N-----YSA-I-DR-----V-----K----SR----GKRLALRFNRIGLPPKVGSFQLFVEGYKDADYWLRR-FEA-EPLPENTNRQ--LLLQ---------------FERLVVLDYIIRNTDR-----G--NDNW----LI---K-------Y----D-------CPPVIKV-A--AIDNGLAFPLKHPDSWR--AY---------------PF-YWAWLPQAK------VPFSQ---------EIKDL-IL--------P--KI-S----D----PNF--------VKDLEE-DLYELF-K-K-DPGFDRGQFH-K--QIAVMRGQI----LNLTQALKDNKSPLHLVQMPPVIVET-
35 HHSearch 52.4219% -91 - C4 -3IB7 CPDA_MYCTU A:[173-236] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDGTILALHH--PPIP-----S--VLDMAVTVEL---R-------D----Q-------AALGRVL-R--GTD-VRAILAGHLHYST--NA---------------T--FVG------------IPVSV---------A------------------------------------------------------------------------------------------------------------------