@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0023: (2016-03-11 )
MDLAIWQIILLVILAACTILDALTLVIGLNFPVITGTLAGIIMGDMVLGLAIGATLQLMVLGVGTYGGASIPDFTTGAIVGTVFAVLSGQDAEFAIGLAIPVGLLMVQLDILARFTNTFFLHRIDSNIASGNISAVKRNIWYGALPWALSRAVPVFIMLTFGQSVVDFILNEIPEWLMGGLRVAGGILPVVGIAILLRYLPTNKFVAYLIIGFVAAAYLKVPMLGVALIGVALAIIYFKQNFKNPVAAGANGAALVGEENEDGEYED
Atome Classification :
(20 SA)
---------------------------------------------------------------.........10.......-.20.-----.......30........40-------.--.......50--........-.----60........70-....-....80.--.......---------90.....----...-100......--.110.......120.---......130.-......140...----------...-.150........160.......------170.----------......180..-.....190.......200.......210........220...---------....230.......240.......250.......260.....-------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------MD
L
A
I
W
Q
I
I
L
L
V
I
L
A
A
C
T
-
I
L
D
A
-----
L
T
L
V
IGLNF
P
V
I
T
G
T
L
A
G
I
-------
I
--
M
G
D
M
V
L
G
L
---
A
I
G
A
T
L
Q
L
-
M
----
V
L
G
VGTYGGASI-PDFT-
T
G
A
I
V
G
T
--
V
F
A
V
LSG---------QDA
E
F
A
I
----
G
L
A
-
I
P
V
G
L
L
M
V
Q
--
L
D
I
L
A
R
F
T
N
T
F
F
L
HR---IDSNIASG
N
I
-
S
A
V
K
RNIWYGA
L
----------
P
W
A
-
L
SR-A
V
P
V
F
I
M
L
T
F
G
Q
S
V
V
D
F
I
------
L
N
E
I
----------
P
E
W
L
M
G
G
L
R
VA-GG
I
L
P
V
V
G
I
A
I
L
L
R
YLPT
N
K
F
V
A
Y
L
I
-
I
G
F
V
A
A
A
Y
L
KV
P
M
L
G
---------
V
A
L
I
G
V
A
L
A
I
I
Y
F
K
Q
NFKNPVAAGAN
G
A
A
L
VGEENEDGEYED-------------------
1
PsiBlast_PDB
79.82
27%
-138
- C4 -
3EPN
1
THIC_CAUCR
A:
[139-276]
-----------------------------------------------------------------------------------------------------------
A
G
I
-------
I
--
T
A
E
M
E
Y
-
V
---
A
I
R
E
N
L
R
R
-
E
QD
R
P
C
V
R
D
G
E
D
F
G
A
S
I
-
P
D
F
V
-
T
P
E
F
V
R
Q
---------------------
E
I
A
R
----
G
R
A
I
I
P
A
N
I
N
H
G
E
--
L
E
P
M
A
I
G
R
N
--
F
L
V
K
---
I
N
A
N
I
G
N
-----
T
V
A
D
E
V
--
D
K
L
----------
V
W
A
-
T
R
W
-
G
A
D
T
V
M
D
L
S
T
G
R
N
I
-----------
H
N
I
----------
R
D
W
I
I
R
N
S
S
V
P
-
I
G
T
V
P
I
----------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
78.84
27%
-137
- C4 -
3EPO
1
THIC_CAUCR
A:
[139-276]
-----------------------------------------------------------------------------------------------------------
A
G
I
-------
I
--
T
A
E
M
E
Y
-
V
---
A
I
R
E
N
L
R
R
-
E
QD
R
P
C
V
R
D
G
E
D
F
G
A
S
I
-
P
D
F
V
-
T
P
E
F
V
R
Q
---------------------
E
I
A
R
----
G
R
A
I
I
P
A
N
I
N
H
G
E
--
L
E
P
M
A
I
G
R
N
--
F
L
V
K
---
I
N
A
N
I
G
N
-----
T
V
A
D
E
V
--
D
K
L
----------
V
W
A
-
T
R
W
-
G
A
D
T
V
M
D
L
S
T
G
R
N
I
-----------
H
N
I
----------
R
D
W
I
I
R
N
S
S
V
P
-
I
G
T
V
P
I
----------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
77.89
27%
-121
- C4 -
4S2A
1
THIC_CAUCR
A:
[141-278]
-----------------------------------------------------------------------------------------------------------
A
G
I
-------
I
--
T
A
E
M
E
Y
-
V
---
A
I
R
E
N
L
R
R
-
E
QDRP
C
V
R
D
G
E
D
F
G
A
S
I
-
P
D
F
V
-
T
P
E
F
V
R
Q
---------------------
E
I
A
R
----
G
R
A
I
I
P
A
N
I
N
H
G
E
--
L
E
P
M
A
I
G
R
N
--
F
L
V
K
---
I
N
A
N
I
G
N
----
S
T
V
A
D
E
V
--
D
K
L
----------
V
W
A
-
T
R
W
-
G
A
D
T
V
M
D
L
S
T
G
R
N
I
-----------
H
N
I
----------
R
D
W
I
I
R
N
S
S
V
P
-
I
G
T
V
P
I
----------------------------------------------------------------------------------------------------------
24
Fugue
70.41
15%
-83
- C2 -
4OR2
9
C562_ECOLX (first)
A:
[5-372]
D
L
E
D
N
W
E
T
L
N
D
N
L
K
V
I
E
K
ADN
A
A
Q
V
K
D
A
L
T
K
M
R
A
A
A
L
D
A
Q
K
ATPPKLEDKSPDS
P
E
M
K
D
F
R
H
G
F
D
I
L
V
G
Q
I
D
D
A
L
K
L
A
N
E
G
-
K
V
K
E
-----
A
Q
A
A
A
E
Q
L
K
T
T
R
N
A
Y
I
Q
K
Y
-------
L
--
I
P
V
R
Y
L
E
W
---
S
N
I
E
S
I
I
A
-
I
----
A
F
S
C
L
G
I
L
V
T
L
F
-
V
T
L
I
-
F
V
L
Y
R
D
T
--
P
V
V
K
S
S
S
---------
R
E
L
C
Y
I
I
----
L
A
G
-
I
F
L
G
Y
V
C
P
F
--
T
L
I
A
K
P
T
T
T
S
C
Y
L
Q
R
---
L
L
V
G
L
S
S
A
M
C
Y
S
A
L
V
T
K
T
N
R
I
A
R
I
LARKPRFMS
A
W
A
-
Q
V
I
-
I
A
S
I
L
I
S
V
Q
L
T
L
V
V
T
L
I
I
------
M
E
P
P
M
P
I
L
S
Y
PSIK
E
V
Y
L
I
C
N
T
S
N
L
-
G
V
V
A
P
L
G
Y
N
G
L
L
I
M
S
C
T
Y
Y
A
F
K
T
R
N
V
P
A
N
F
N
E
A
K
Y
I
A
F
T
M
Y
T
---------
T
C
I
I
W
L
A
F
V
P
I
Y
F
G
S
N
Y
K
I
I
T
T
C
F
A
V
S
L
S
V
T
V
A
L
G
C
M
F
T
P
K
M
Y
I
I
IAKPE-----------
25
Fugue
67.83
14%
-148
- C2 -
4O5J
3
?
A:
[27-400]
-----------LKN
L
N
E
K
Y
E
Q
L
S
Q
Y
L
N
Q
V
A
S
L
K
Q
S
I
Q
N
A
N
N
I
E
L
V
N
S
S
L
N
Y
L
K
S
F
T
N
N
N
Y
NST
T
Q
S
P
I
F
N
A
V
Q
A
V
I
T
S
V
L
G
-
F
W
S
L
Y
AGNY
F
T
F
F
V
G
K
K
V
D
--
S
G
Q
P
A
S
V
QGNPPFK
T
--
I
I
E
N
C
S
G
I
ENC
A
M
D
Q
T
T
Y
D
-
K
----
M
K
K
L
A
E
D
L
Q
A
A
Q
-
T
N
S
A
-
T
K
---
G
N
--
N
L
C
A
L
S
G
CAATSNPPN
S
T
V
S
N
A
L
----
N
L
A
-
Q
Q
L
M
D
L
I
A
N
--
T
K
T
A
M
M
W
K
N
I
V
I
S
G
V
---
S
N
T
S
G
A
I
T
S
T
-
N
Y
P
T
Q
Y
A
V
F
N
N
I
----------
K
A
M
-
I
P
I
-
L
Q
Q
A
V
T
L
S
Q
S
N
H
T
L
S
A
S
L
QAQATG
S
Q
T
N
----------
P
K
F
A
K
D
I
Y
T
F
A
-
Q
N
Q
K
Q
V
I
S
Y
A
Q
D
I
F
N
L
F
N
S
--
I
P
A
E
Q
-
Y
K
Y
L
E
K
A
Y
L
K
I
P
N
A
G
STPTNPYRQ
V
V
N
L
N
Q
E
V
Q
T
I
K
N
N
V
S
Y
Y
G
N
R
V
D
A
A
L
S
V
A
R
D
V
Y
N
L
K
S
N
Q
A
E
I
V
T
A
Y
N
D
A
K
T
L
S
E
E
I
S
K
LPH
23
Fugue
61.92
15%
-96
- C2 -
2XQH
4
?
A:
[23-280]
-----------------------------------------------------------------------------
S
D
A
K
-
A
S
G
E
-----
F
S
V
A
V
G
------
N
G
A
R
A
T
E
-------
K
--
A
S
T
A
V
G
S
W
---
A
A
A
D
G
K
Q
S
-
T
----
A
L
G
V
G
T
Y
A
Y
A
N
A
-
S
T
A
L
G
S
V
A
F
V
D
N
TA
T
Y
G
T
A
A
G
---------
N
R
A
K
V
D
K
DATE
G
T
A
-
L
G
A
K
A
T
V
T
N
--
K
N
S
V
A
L
G
A
N
S
--
V
T
T
---
R
D
N
E
V
Y
I
G
Y
K
-
T
G
T
E
S
D
K
T
Y
G
T
R
----------
V
L
G
G
L
S
D
-
G
T
R
N
----
S
D
A
A
T
V
G
Q
L
N
------
R
K
V
G
----------
G
V
Y
D
D
V
K
A
R
I
T
-
V
E
S
E
K
Q
K
K
Y
T
D
Q
K
T
S
E
V
N
E
K
V
E
A
R
T
T
-
V
G
V
D
S
D
G
K
L
T
R
A
E
G
A
---------
T
K
T
I
A
V
N
D
G
L
V
A
L
S
G
R
T
D
R
I
D
Y
A
V
G
A
I
D
G
R
V
T
R
N
T
Q
S
I
E
K
N
S
K
A
I
A
A
N
T
RT----------
19
Fugue
52.52
18%
-108
- C2 -
1VK5
8
RDM1_ARATH
A:
[36-156]
-------------------------------------------------------------------------------------------------------------------------------------
G
S
L
L
R
R
-
A
----
E
M
Y
Q
D
Y
M
K
Q
V
P
I
-
P
T
N
R
-
G
S
L
I
P
F
T
--
S
W
V
G
L
S
I
---------
S
M
K
Q
L
Y
G
----
Q
P
L
-
H
Y
L
T
N
V
L
L
Q
--
R
W
D
Q
S
R
F
G
T
D
S
E
E
Q
R
---
L
D
S
I
I
---
H
P
-
T
K
A
E
A
T
I
W
L
V
E
E
----------
I
H
R
-
L
T
P
S
H
L
H
M
A
L
L
W
R
S
D
P
M
Y
H
S
F
I
------
D
P
I
F
----------
P
E
--------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
51.87
26%
-113
- C4 -
3QO6
2
DEGP1_ARATH
A:
[139-227]
------------------------------------------------------------------------------------------------
G
L
D
H
T
L
T
T
G
V
I
S
G
L
-------
R
R
E
I
S
S
A
A
T
G
R
---
P
I
Q
D
V
I
Q
T
D
A
----
A
I
N
P
G
N
S
G
G
P
L
L
-
D
--
S
-
S
G
T
L
I
G
I
--
N
T
A
I
Y
S
P
---------
S
G
A
S
S
G
V
----
G
F
S
-
I
P
V
D
T
V
G
G
I
--
V
D
Q
L
V
R
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
51.08
13%
-105
* C3 *
1QKL
-
A:
[801-927]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
D
N
-
E
D
N
F
D
G
D
--
D
F
D
D
V
E
E
---------
D
E
G
L
D
D
L
----
E
N
A
-
E
E
E
G
Q
-------
E
N
V
E
I
L
P
S
G
E
R
P
Q
A
---
N
Q
K
R
I
T
T
P
Y
M
-
T
K
Y
E
R
A
R
V
L
G
T
R
----------
A
L
Q
-
I
A
M
-
C
A
P
V
M
V
E
L
E
G
E
T
D
P
L
L
I
A
------
M
K
E
L
----------
K
A
-----------
R
K
I
P
----
I
I
I
R
R
Y
L
P
D
G
S
Y
E
D
W
G
V
-
D
E
L
I
I
T
D
------------------------------------------------------------------------------
8
PsiBlast_PDB
49.05
22%
-131
- C4 -
1J4N
-
AQP1_BOVIN
A:
[11-94]
--------------------------------------------------------------------
W
R
A
V
V
A
E
F
L
A
M
I
L
F
I
F
I
S
-----
I
G
S
A
L
G
F
H
Y
P
I
K
S
N
Q
T
T
G
A
-------
V
--
Q
D
N
V
K
V
S
L
---
A
F
G
L
S
I
A
T
-
L
----
A
Q
S
V
G
H
I
S
G
A
H
L
N
P
A
V
T
-
L
G
L
L
L
S
C
--
Q
I
S
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
44.24
24%
-72
- C4 -
4L4Q
-
METK_THEKO
A:
[72-166]
--------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
R
A
Y
-
P
Q
F
G
-
G
G
E
V
I
K
P
--
I
Y
I
L
L
S
G
---------
R
A
V
E
M
V
D
----
R
E
F
-
F
P
V
H
E
I
A
L
K
A
A
K
D
Y
L
R
K
A
V
R
H
L
D
L
E
H
H
V
I
I
D
S
R
I
G
Q
G
S
V
-
D
L
V
------
G
V
F
----------
N
K
A
-
K
K
N
-
P
I
P
L
A
N
D
T
S
F
G
-------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
37.11
36%
-38
- C4 -
1TU8
1
GSTP_ONCVO
A:
[12-51]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
A
-
E
P
I
R
L
F
L
V
D
--
Q
D
I
--
K
F
-----------
I
D
D
R
I
A
K
D
D
F
-
S
S
I
K
S
Q
F
Q
F
G
Q
L
----------
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
36.94
36%
-50
- C4 -
1TU7
1
GSTP_ONCVO
A:
[12-51]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
A
-
E
P
I
R
L
F
L
V
D
--
Q
D
I
--
K
F
-----------
I
D
D
R
I
A
K
D
D
F
-
S
S
I
K
S
Q
F
Q
F
G
Q
L
----------
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
31.40
45%
35
- C4 -
4F4C
-
PGP1_CAEEL
A:
[350-437]
-------------------------------------------------------------------------------------------------
L
N
F
G
D
M
L
T
T
F
S
S
V
-------
M
--
M
G
S
M
A
L
G
L
------
A
G
P
Q
L
-
A
----
V
L
G
T
A
Q
-
G
A
A
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
31.05
28%
56
* C4 *
3QE7
2
URAA_ECOLI
A:
[323-355]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
A
------
I
Q
M
I
----------
P
L
P
V
M
G
G
V
S
L
L
L
Y
G
V
I
G
A
S
G
I
R
V
L
I
E
--------------------------------------------------------------------------------------------------
18
Fugue
26.51
30%
282
- C4 -
1DPQ
-
A:
[1-20]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
G
F
F
K
R
N
R
A
A
L
E
E
D
D
E
E
G
E
----------------------
17
HHSearch
25.02
21%
126
- C4 -
1JB0
-
PSAI_THEEB
I:
[18-36]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
C
W
L
M
P
T
V
V
M
G
L
L
F
L
Y
I
E
G
----------------------------------------------------------------------------------------------
27
Fugue
24.68
33%
2
* C2 *
4WOL
3
TYOBP_HUMAN
A:
[1-33]
--------------------------------------------------------------------------------------------------
C
S
T
V
S
P
G
V
L
A
G
I
-------
V
--
V
G
D
L
V
L
T
V
---
L
I
A
L
A
V
Y
F
-
L
----
G
R
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
22.50
23%
146
- C4 -
2WSC
-
PSAI_PEA
I:
[11-30]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
-
G
L
L
F
P
A
V
A
M
A
S
L
F
L
H
V
E
K
----------------------------------------------------------------------------------------------
13
HHSearch
22.14
22%
498
- C1 -
3QNQ
-
?
A:
[384-392]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
P
I
L
F
-
S
G
Y
L
---------------------------------------------------------------------------------