@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0024: (2016-03-11 )
MKMANTKTEQDFEKVLKRRDLIAANFRWLFASQICWNYERMMSTGYLYSILPTLRKLYKTDDDLKDMMNMHNQFFNTNPMVGGLILGMDMAIEEREKKASKEVVTGLKTGLMGPFAGVGDTIFGVILPTIFGSIAAYMGLQGNVTGVVIWVLVNILVVGARFTLLPLGYKQGAKLVTEFADRLNALTDAAILLGVTVVGALIPTVIKATVPFVYKSGKVELKMQDMLDQIMPSLVPVLLVALIYALLGHKKMTSTKAILLVMVIAIILFNLKILG
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------.......-..10........20--........30........40........50........60........70......-----..80....--....90--...-.....100.......110.......-----120.......130.....----..140.......150.......160-..--......170---........180.-......----190.......200......---.210....-...220....--------...230.-..---....240.---......250......------.260.......270...----------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------MKMANTK-
T
E
Q
D
F
E
K
V
L
K
RRD
L
--
I
A
A
N
F
R
W
L
F
A
S
Q
I
C
W
N
Y
E
R
M
MST
G
Y
L
Y
S
I
L
P
T
L
R
K
L
YKT
D
D
D
L
K
D
M
M
N
M
H
N
Q
FFNT-----NPMVG
G
L
I--LGMD
M
A
--
I
E
E
-
R
E
K
K
A
S
K
E
V
V
T
G
L
K
TGLMGPFAGV
G
-----
D
T
I
F
G
V
I
L
P
T
I
F
G
S
I
A
A
Y
----MGLQGN
V
T
G
V
V
I
W
V
L
V
N
I
L
V
VGA
R
--
F
T
--
L
L
PL
G
Y
K
Q
----
G
A
K
L
V
T
E
F
A
D
R
L
-
N
A
L
T
D
A
----
A
I
L
L
G
V
T
V
V
G
A
L
I
P
T
V
I
K
A
---TV
P
F
V
Y
KS-
G
K
V
E
L
K
M
Q
D
M
--------
L
D
Q
I
M
P
S
-
L
V
---
P
V
L
L
V
A
L
I
---
Y
A
LLGHKKMT
S
T
K
A
I
------
L
L
V
M
V
I
A
I
I
L
F
N
L
K
ILG----------
39
Fugue
82.87
13%
-110
- C3 -
4D10
-
CSN2_HUMAN
B:
[34-447]
VD
L
E
N
Q
Y
Y
N
S
K
A
L
K
EDDPKA
A
L
S
S
F
Q
K
V
L
E
LEGEKG
E
W
G
F
K
A
L
K
Q
M
I
K
I
N
F
K
L
TNF
P
E
M
M
N
R
Y
K
Q
L
L
T
Y
IRSAVT
R
N
Y
S
E
K
S
I
N
S
I
L
D
Y
I
S
T
S
KQM
D
L
L
Q
E
F
Y
E
T
T
L
E
A
L
K
D
A
K
N
D
R
L
W
F
K
T
N
T
K
L
G
K
L
--
Y
L
E
R
E
E
Y
G
K
L
Q
K
I
L
R
Q
L
H
Q
S
C
Q
T
Q
-
L
L
E
I
Y
A
L
E
I
Q
M
Y
T
A
Q
K
N
N
K
K
L
K
A
L
Y
E
Q
S
L
H
I
K
S
A
I
P
H
P
L
I
M
G
V
I
R
E
C
G
G
K
M
H
--
L
R
E
G
E
F
E
K
A
H
T
D
F
F
E
A
F
K
N
Y
D
E
S
G
S
P
R
R
T
-----
T
C
L
K
Y
L
V
L
A
N
M
L
M
K
S
G
I
N
PFDS
Q
E
A
K
P
Y
K
N
D
P
E
I
L
A
M
T
N
L
V
S
A
Y
Q
N
ND
I
T
--
E
F
E
K
I
L
K
T
----
N
H
S
N
I
M
D
D
P
F
I
R
-
E
H
I
E
E
L
----
L
R
N
I
R
T
Q
V
L
I
K
L
I
K
P
Y
T
R
I
---
H
I
P
F
I
S
K
E
L
N
I
D
V
A
D
V
E
S
L
--------
L
V
Q
C
I
L
D
-
N
T
IHG
R
I
D
Q
V
N
Q
L
---
L
E
L
D
H
Q
K
R
G
G
A
R
Y
T
A
------
L
D
K
W
T
N
Q
L
N
S
L
N
Q
A
V
V
S
K
L
A-------
38
Fugue
75.66
21%
-98
- C2 -
1DMU
6
T2B1_BACIU
A:
[1-299]
-------------------------------------------------------------------------------------------------------------
M
Y
N
L
H
-
R
E
K
I
F
M
S
Y
N
Q
N
K
Q
Y
--
L
E
D
N
------
P
E
I
Q
E
K
I
E
-
L
Y
G
L
N
L
L
N
E
V
I
S
D
N
E
E
E
I
R
A
D
Y
N
E
A
N
F
L
--
H
P
F
W
M
N
Y
-----
P
P
L
D
R
G
K
M
--
P
K
G
D
Q
I
PW
I
E
V
-
G
E
K
A
V
G
S
K
L
T
R
L
V
S
Q
R
E
D
I
T
V
R
E
I
G
LPTGP
D
E
R
Y
L
L
T
S
P
T
I
Y
S
L
T
N
G
F
----
T
D
--------
S
I
M
M
F
V
D
I
K
S
V
G
P
R
--
D
S
DY
D
L
V
L
S
P
N
Q
VSGN
G
D
W
A
Q
L
E
G
G
I
Q
N
-
N
Q
Q
T
I
Q
----
G
P
R
S
S
Q
I
F
L
P
T
I
P
P
L
Y
I
L
S
DG
T
I
A
P
V
V
H
L
F
-
I
K
P
I
Y
A
M
R
S
L
TKG
D
T
G
Q
S
L
Y
K
I
K
L
A
-
S
V
---
P
N
G
L
G
L
F
C
NPG
Y
A
F
D
S
A
Y
K
F
L
F
R
P
G
K
DDRTKS
L
L
Q
K
R
V
R
V
D
L
R
V
L
D
K
I
G
PR
V
M
T
I
D
MDK
31
Fugue
71.33
18%
-90
- C4 -
2ONK
-
WTPB_ARCFU
C:
[24-275]
-----------------------------------------------------------------------------------------------------------
M
R
L
L
F
S
A
-
L
L
A
L
L
S
S
I
I
L
L
F
V
L
--
L
P
V
A
A
T
V
T
L
Q
L
F
N
F
D
E
F
L
K
A
A
S
D
-------
P
A
V
W
K
V
V
L
T
T
Y
Y
A
A
L
I
S
T
L
I
A
V
I
F
------------
G
T
P
--
L
A
Y
I
L
A
--
R
K
S
-
F
P
G
K
S
V
V
E
G
I
V
D
L
P
V
V
I
-------
P
-----
H
T
V
A
G
I
A
L
L
V
V
F
G
S
--------
S
G
L
I
G
S
F
S
P
L
K
F
V
D
A
L
P
G
I
V
V
A
M
L
--
F
V
--
S
V
P
I
Y
I
N
Q
----
A
K
E
G
F
A
S
V
D
V
R
L
-
E
H
V
A
R
T
LGSS
P
L
R
V
F
F
T
V
S
L
P
L
S
V
R
H
I
V
A
---
G
A
I
M
S
W
A
R
-
G
I
S
E
F
G
A
V
V
V
--------
I
--
A
Y
Y
P
-
M
I
---
A
P
T
L
I
Y
E
R
---
Y
L
S
E
G
L
S
A
A
M
P
V
A
A
I
------
L
I
L
L
S
L
A
V
F
V
A
L
R
I
I
V
G
----------
32
Fugue
64.03
26%
-10
- C4 -
1XEQ
12
NS1_INBLE
A:
[15-103]
-----------------------------------------------------------------------------------------------------------------------------------
G
A
T
N
A
T
I
N
F
E
A
G
I
L
E
C
Y
E
R
F
S
W
Q
R
A
L
D
--
Y
P
G
Q
D
R
L
H
R
L
K
R
K
L
E
S
R
I
K
T
H
N
K
---
S
-----
E
P
--------
E
N
K
R
M
S
--
L
E
E
-
R
K
A
I
G
V
K
M
M
K
V
L
L
---
F
M
D
P
S
A
G
I
E
-----
G
F
E
P
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
62.64
27%
-110
- C4 -
3ZUX
4
?
A:
[126-217]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
G
N
V
----
A
L
S
V
A
V
T
S
V
S
T
L
T
S
P
L
L
T
P
---
A
I
F
L
M
L
A
G
-
E
M
L
E
I
Q
A
A
G
M
--------
L
M
S
I
V
K
M
V
L
L
---
P
I
V
L
G
L
I
V
---
H
K
V
L
G
S
K
T
E
K
L
T
D
A
L
------
P
L
V
S
V
A
A
I
V
L
I
I
G
A
V
V
G
----------
20
PsiBlast_PDB
62.16
30%
-95
- C4 -
4JAT
1
PKS11_MYCTU
A:
[105-179]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
T
G
V
A
V
P
S
L
D
A
R
I
A
G
R
----
L
G
L
R
P
D
V
R
---------------
R
--
M
P
--
L
F
G
L
G
S
V
A
----
G
A
A
G
V
A
R
L
R
D
Y
L
R
G
A
P
D
D
V
----
A
V
L
V
S
V
E
L
C
S
L
T
Y
P
A
V
-
K
P
---
T
V
-------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
56.93
32%
47
- C4 -
1S0G
-
BXB_CLOBO
A:
[796-856]
----------------------------------------------------------------------------------------------------------------------
D
F
D
N
T
L
K
K
N
L
L
N
Y
I
D
E
N
K
L
Y
L
I
G
S
A
---
E
Y
E
K
S
K
V
N
K
Y
L
K
T
I
M
P
F
D
L
S
I
Y
T
N
D
T
I
L
I
E
M
F
N
K
Y
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
56.67
32%
68
- C4 -
2NP0
-
BXB_CLOBO
A:
[796-856]
----------------------------------------------------------------------------------------------------------------------
D
F
D
N
T
L
K
K
N
L
L
N
Y
I
D
E
N
K
L
Y
L
I
G
S
A
---
E
Y
E
K
S
K
V
N
K
Y
L
K
T
I
M
P
F
D
L
S
I
Y
T
N
D
T
I
L
I
E
M
F
N
K
Y
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
56.52
32%
46
- C4 -
1S0F
-
BXB_CLOBO
A:
[796-867]
----------------------------------------------------------------------------------------------------------------------
D
F
D
N
T
L
K
K
N
L
L
N
Y
I
D
E
N
K
L
Y
L
I
G
S
A
---
E
Y
E
K
S
K
V
N
K
Y
L
K
T
I
M
P
F
D
L
S
I
Y
T
N
D
T
I
L
I
E
M
F
N
K
Y
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
56.26
32%
54
- C4 -
1S0D
-
BXB_CLOBO
A:
[796-856]
----------------------------------------------------------------------------------------------------------------------
D
F
D
N
T
L
K
K
N
L
L
N
Y
I
D
E
N
K
L
Y
L
I
G
S
A
---
E
Y
E
K
S
K
V
N
K
Y
L
K
T
I
M
P
F
D
L
S
I
Y
T
N
D
T
I
L
I
E
M
F
N
K
Y
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
55.73
32%
46
- C4 -
1G9D
-
BXB_CLOBO
A:
[796-856]
----------------------------------------------------------------------------------------------------------------------
D
F
D
N
T
L
K
K
N
L
L
N
Y
I
D
E
N
K
L
Y
L
I
G
S
A
---
E
Y
E
K
S
K
V
N
K
Y
L
K
T
I
M
P
F
D
L
S
I
Y
T
N
D
T
I
L
I
E
M
F
N
K
Y
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
55.72
32%
51
- C4 -
1EPW
-
BXB_CLOBO
A:
[796-856]
----------------------------------------------------------------------------------------------------------------------
D
F
D
N
T
L
K
K
N
L
L
N
Y
I
D
E
N
K
L
Y
L
I
G
S
A
---
E
Y
E
K
S
K
V
N
K
Y
L
K
T
I
M
P
F
D
L
S
I
Y
T
N
D
T
I
L
I
E
M
F
N
K
Y
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
55.69
32%
50
- C4 -
1G9B
-
BXB_CLOBO
A:
[796-856]
----------------------------------------------------------------------------------------------------------------------
D
F
D
N
T
L
K
K
N
L
L
N
Y
I
D
E
N
K
L
Y
L
I
G
S
A
---
E
Y
E
K
S
K
V
N
K
Y
L
K
T
I
M
P
F
D
L
S
I
Y
T
N
D
T
I
L
I
E
M
F
N
K
Y
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
55.19
32%
51
- C4 -
1G9A
-
BXB_CLOBO
A:
[796-856]
----------------------------------------------------------------------------------------------------------------------
D
F
D
N
T
L
K
K
N
L
L
N
Y
I
D
E
N
K
L
Y
L
I
G
S
A
---
E
Y
E
K
S
K
V
N
K
Y
L
K
T
I
M
P
F
D
L
S
I
Y
T
N
D
T
I
L
I
E
M
F
N
K
Y
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
54.97
32%
46
- C4 -
1I1E
-
BXB_CLOBO
A:
[796-856]
----------------------------------------------------------------------------------------------------------------------
D
F
D
N
T
L
K
K
N
L
L
N
Y
I
D
E
N
K
L
Y
L
I
G
S
A
---
E
Y
E
K
S
K
V
N
K
Y
L
K
T
I
M
P
F
D
L
S
I
Y
T
N
D
T
I
L
I
E
M
F
N
K
Y
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
54.96
32%
49
- C4 -
1S0E
-
BXB_CLOBO
A:
[796-856]
----------------------------------------------------------------------------------------------------------------------
D
F
D
N
T
L
K
K
N
L
L
N
Y
I
D
E
N
K
L
Y
L
I
G
S
A
---
E
Y
E
K
S
K
V
N
K
Y
L
K
T
I
M
P
F
D
L
S
I
Y
T
N
D
T
I
L
I
E
M
F
N
K
Y
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
54.79
32%
53
- C4 -
1S0B
-
BXB_CLOBO
A:
[796-856]
----------------------------------------------------------------------------------------------------------------------
D
F
D
N
T
L
K
K
N
L
L
N
Y
I
D
E
N
K
L
Y
L
I
G
S
A
---
E
Y
E
K
S
K
V
N
K
Y
L
K
T
I
M
P
F
D
L
S
I
Y
T
N
D
T
I
L
I
E
M
F
N
K
Y
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
54.73
32%
52
- C4 -
1S0C
-
BXB_CLOBO
A:
[796-856]
----------------------------------------------------------------------------------------------------------------------
D
F
D
N
T
L
K
K
N
L
L
N
Y
I
D
E
N
K
L
Y
L
I
G
S
A
---
E
Y
E
K
S
K
V
N
K
Y
L
K
T
I
M
P
F
D
L
S
I
Y
T
N
D
T
I
L
I
E
M
F
N
K
Y
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
54.60
32%
67
- C4 -
1F31
-
BXB_CLOBO
A:
[796-856]
----------------------------------------------------------------------------------------------------------------------
D
F
D
N
T
L
K
K
N
L
L
N
Y
I
D
E
N
K
---
I
G
S
A
---
E
Y
E
K
S
K
V
N
K
Y
L
K
T
I
M
P
F
D
L
S
I
Y
T
N
D
T
I
L
I
E
M
F
N
K
Y
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
54.48
32%
53
- C4 -
1G9C
-
BXB_CLOBO
A:
[796-856]
----------------------------------------------------------------------------------------------------------------------
D
F
D
N
T
L
K
K
N
L
L
N
Y
I
D
E
N
K
L
Y
L
I
G
S
A
---
E
Y
E
K
S
K
V
N
K
Y
L
K
T
I
M
P
F
D
L
S
I
Y
T
N
D
T
I
L
I
E
M
F
N
K
Y
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------