@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0029: (2016-03-11 )
MKVEGLLGFLGAALGIGFSLMVLVIPDISQALEEESFFFYMLTIGSLVLSGVGLAGSFIVSHKPRLGGAMMVAAAIGCTMSISIMFLLPIVLLAVGGLIALINYEEAASVEE
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------.........10----........20........30....-----....40-....---.....---50....---....60--.---------.......70..----------------------......80------------------------.-----.......90.......-..100.......110-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------M
K
V
E
G
L
L
G
F
L
G
----
A
A
L
G
I
G
F
S
L
M
V
L
VIPD
I
S
Q
A
LEEE-----
S
F
F
F
Y
--
M
L
T
I
---
G
S
L
V
L
---
S
G
VGLA---
G
S
F
I
VS--H---------KPRLG
G
A
M
M
V
A
----------------------
A
AIGCT
M
S
------------------------
I
-----
S
I
M
F
L
L
P
I
-
V
L
L
A
V
G
G
-
L
I
A
L
I
N
Y
E
E
AASVEE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
79.90
15%
-174
- C2 -
4Q7O
8
?
A:
[4-136]
--------------------------------------------------------------------------------------------------------------------------------
M
K
N
N
I
F
L
N
L
N
K
----
K
S
I
N
N
N
H
F
V
I
S
I
F
F
E
T
I
Y
Q
F
E
T
K
D
-----
T
L
L
E
C
--
F
K
N
I
T
T
T
G
H
F
G
V
---
I
G
A
Q
Y
E
K
I
D
A
T
R
W
I
G
--
D
---------
Y
E
E
V
N
G
F
E
Y
I
D
----------------------
K
A
P
S
I
Y
F
S
------------------------
V
G
DDFN
P
E
E
L
I
I
P
I
-
N
L
A
Y
H
Y
F
-
N
I
A
I
S
D
F
L
I
A
H
P
E
Y
Q
K
K
C
K
E
I
Q
K
T
Y-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
75.75
18%
-210
- C3 -
1SLU
-
?
A:
[10-142]
-------------------------------------------------------------------------------------------------------------------------------------
I
A
P
Y
P
Q
----
A
E
K
G
M
K
R
Q
V
I
Q
L
------
T
P
Q
E
D
E
-----
S
T
L
K
V
--
E
L
L
I
---
G
Q
T
L
E
V
D
C
N
L
H
R
L
G
---
G
K
L
E
N
K
--
T
---------
L
E
G
W
G
Y
D
Y
Y
V
F
DKVS
S
P
V
S
T
MMHCPDKEKKFVT
A
Y
L
G
D
A
G
M
------------------------
L
-----
R
Y
N
S
K
L
P
I
-
V
V
Y
T
P
D
N
V
D
V
K
Y
R
V
W
K
A
E
E
K
I
D
N
A
V
VR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
70.54
22%
-110
- C2 -
2HIN
2
?
A:
[1-66]
--------------------------------------------------------------------------------------------------------------------------------
M
K
P
E
E
L
V
R
H
F
G
D
V
E
K
A
A
V
G
V
G
V
T
------
P
G
A
V
Y
Q
W
L
Q
A
-----
G
E
I
P
P
--
L
R
Q
S
---
D
I
E
V
R
---
T
A
Y
K
L
K
---
S
D
F
T
S
Q
--
R
---------
M
G
K
E
G
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
68.67
20%
-163
- C3 -
2CBL
1
CBL_HUMAN
A:
[218-305]
---------------------------------------------------------------------------------------------------------------------------------
T
H
P
G
Y
M
A
F
L
T
-----------------
Y
D
E
V
K
A
R
L
Q
K
F
IHKPG
S
Y
I
F
R
L
S
C
T
R
L
---
G
Q
W
A
I
---
G
Y
V
T
A
D
---
G
N
I
L
Q
T
I
P
H
---------
N
K
P
L
F
Q
A
L
I
D
G
----------------------
F
R
E
G
------------------------------------
F
Y
L
F
P
-------
D
G
-
R
N
Q
N
P
D
L
T
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
66.07
17%
-204
* C3 *
1ID5
-
?
I:
[5-142]
--------------------------------------------------------------------------------------------------------------------------------
Q
P
L
E
K
I
A
P
Y
P
Q
----
A
E
K
G
M
K
R
Q
V
I
Q
L
------
T
P
Q
E
D
E
-----
S
T
L
K
V
--
E
L
L
I
---
G
Q
T
L
E
VDC
N
L
H
R
L
G
---
G
K
L
E
N
K
--
T
---------
L
E
G
W
G
Y
D
Y
Y
V
F
----------------------
D
K
V
S
S
P
V
S
TRMACPDGKKEKKFVTAYLGDAGM
L
-----
R
Y
N
S
K
L
P
I
-
V
V
Y
T
P
D
N
V
D
V
K
Y
R
V
W
K
A
E
E
K
I
D
N
AVVR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
64.73
15%
-120
- C2 -
3WDO
-
?
A:
[1-453]
DYKMT
P
G
E
R
R
A
T
W
G
L
G
T
V
F
S
L
R
M
L
G
M
F
M
V
L
P
V
L
T
T
YGMALQGAS
E
A
L
I
G
I
A
I
G
I
Y
G
L
T
Q
A
V
F
Q
I
P
F
G
L
L
S
D
R
IG
R
K
P
L
I
V
G
G
L
A
V
F
A
A
G
S
V
I
A
A
L
SDS
I
W
G
I
I
L
G
R
A
L
Q
G
S
G
AI
A
A
A
V
M
A
L
L
S
D
L
TRE
Q
N
R
T
K
A
M
A
F
I
G
----
V
S
F
G
I
T
F
A
I
A
M
V
L
G
P
I
I
T
H
K
L
G
L
H
-----
A
L
F
W
M
--
I
A
I
L
---
A
T
T
G
I
---
A
L
T
I
W
V
---
V
P
N
S
S
T
--
H
V
L
N
R
E
SGMV
K
G
S
F
S
K
V
L
A
E
P
----------------------
R
L
L
K
L
N
F
G
------------------------
I
-----
M
C
L
H
M
L
L
M
S
T
F
V
A
L
P
G
-
Q
L
A
D
A
G
F
P
A
A
E
H
W
K
V
Y
L
A
T
M
L
I
A
F
G
S
V
V
P
F
I
I
Y
A
E
VKRK
M
K
Q
V
F
V
F
C
V
G
L
I
V
V
A
E
I
V
L
W
N
AQTQ
F
W
Q
L
V
V
G
V
Q
L
F
F
V
A
F
N
L
M
E
A
L
L
P
S
L
I
S
K
E
SPAGY
K
G
T
A
M
G
V
Y
S
T
S
Q
F
L
G
V
A
I
G
G
S
L
G
G
W
I
D
G
M
FD
G
Q
G
V
F
L
A
G
A
M
L
A
A
V
W
L
A
V
A
S
T
MKEPP
Y
V
S
S
L
R
I
EIPADIAAN
E
A
L
K
V
R
L
L
E
TEGVK
E
V
L
I
AEEEH
S
A
Y
V
K
I
DSKVTN
R
F
E
V
E
Q
A
I
R
QAL
13
PsiBlast_PDB
54.91
27%
-46
- C2 -
4FTM
4
CHK1_HUMAN
A:
[73-130]
---------------------------------------------------------------------------------------------------------------------------------
R
R
E
G
N
I
Q
Y
L
F
----
L
E
Y
C
S
G
G
E
L
F
D
R
I
E
P
D
I
G
M
P
E
P
D
A
-----
Q
R
F
F
H
--
Q
L
M
A
---
G
V
V
Y
L
---
H
G
I
G
I
T
---
H
R
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
54.89
27%
-41
- C2 -
4FT9
2
CHK1_HUMAN
A:
[73-130]
---------------------------------------------------------------------------------------------------------------------------------
R
R
E
G
N
I
Q
Y
L
F
----
L
E
Y
C
S
G
G
E
L
F
D
R
I
E
P
D
I
G
M
P
E
P
D
A
-----
Q
R
F
F
H
--
Q
L
M
A
---
G
V
V
Y
L
---
H
G
I
G
I
T
---
H
R
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
54.79
27%
-41
- C2 -
4FTK
3
CHK1_HUMAN
A:
[73-130]
---------------------------------------------------------------------------------------------------------------------------------
R
R
E
G
N
I
Q
Y
L
F
----
L
E
Y
C
S
G
G
E
L
F
D
R
I
E
P
D
I
G
M
P
E
P
D
A
-----
Q
R
F
F
H
--
Q
L
M
A
---
G
V
V
Y
L
---
H
G
I
G
I
T
---
H
R
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
54.60
27%
-39
- C2 -
4FTT
3
CHK1_HUMAN
A:
[73-130]
---------------------------------------------------------------------------------------------------------------------------------
R
R
E
G
N
I
Q
Y
L
F
----
L
E
Y
C
S
G
G
E
L
F
D
R
I
E
P
D
I
G
M
P
E
P
D
A
-----
Q
R
F
F
H
--
Q
L
M
A
---
G
V
V
Y
L
---
H
G
I
G
I
T
---
H
R
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
54.55
27%
-45
- C2 -
4QYE
1
CHK1_HUMAN
A:
[74-131]
---------------------------------------------------------------------------------------------------------------------------------
R
R
E
G
N
I
Q
Y
L
F
----
L
E
Y
C
S
G
G
E
L
F
D
R
I
E
P
D
I
G
M
P
E
P
D
A
-----
Q
R
F
F
H
--
Q
L
M
A
---
G
V
V
Y
L
---
H
G
I
G
I
T
---
H
R
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
54.50
27%
-49
- C2 -
4QYH
1
CHK1_HUMAN
A:
[74-131]
---------------------------------------------------------------------------------------------------------------------------------
R
R
E
G
N
I
Q
Y
L
F
----
L
E
Y
C
S
G
G
E
L
F
D
R
I
E
P
D
I
G
M
P
E
P
D
A
-----
Q
R
F
F
H
--
Q
L
M
A
---
G
V
V
Y
L
---
H
G
I
G
I
T
---
H
R
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
54.50
27%
-43
- C2 -
4FT7
3
CHK1_HUMAN
A:
[73-130]
---------------------------------------------------------------------------------------------------------------------------------
R
R
E
G
N
I
Q
Y
L
F
----
L
E
Y
C
S
G
G
E
L
F
D
R
I
E
P
D
I
G
M
P
E
P
D
A
-----
Q
R
F
F
H
--
Q
L
M
A
---
G
V
V
Y
L
---
H
G
I
G
I
T
---
H
R
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
54.50
27%
-42
- C2 -
4FSR
2
CHK1_HUMAN
A:
[73-130]
---------------------------------------------------------------------------------------------------------------------------------
R
R
E
G
N
I
Q
Y
L
F
----
L
E
Y
C
S
G
G
E
L
F
D
R
I
E
P
D
I
G
M
P
E
P
D
A
-----
Q
R
F
F
H
--
Q
L
M
A
---
G
V
V
Y
L
---
H
G
I
G
I
T
---
H
R
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
54.38
27%
-41
- C2 -
4FTR
3
CHK1_HUMAN
A:
[73-130]
---------------------------------------------------------------------------------------------------------------------------------
R
R
E
G
N
I
Q
Y
L
F
----
L
E
Y
C
S
G
G
E
L
F
D
R
I
E
P
D
I
G
M
P
E
P
D
A
-----
Q
R
F
F
H
--
Q
L
M
A
---
G
V
V
Y
L
---
H
G
I
G
I
T
---
H
R
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
54.38
27%
-40
- C2 -
4FT0
2
CHK1_HUMAN
A:
[73-134]
---------------------------------------------------------------------------------------------------------------------------------
R
R
E
G
N
I
Q
Y
L
F
----
L
E
Y
C
S
G
G
E
L
F
D
R
I
E
P
D
I
G
M
P
E
P
D
A
-----
Q
R
F
F
H
--
Q
L
M
A
---
G
V
V
Y
L
---
H
G
I
G
I
T
---
H
R
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
54.36
27%
-38
- C2 -
4FSM
3
CHK1_HUMAN
A:
[73-130]
---------------------------------------------------------------------------------------------------------------------------------
R
R
E
G
N
I
Q
Y
L
F
----
L
E
Y
C
S
G
G
E
L
F
D
R
I
E
P
D
I
G
M
P
E
P
D
A
-----
Q
R
F
F
H
--
Q
L
M
A
---
G
V
V
Y
L
---
H
G
I
G
I
T
---
H
R
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
54.21
27%
-40
- C2 -
4FSQ
2
CHK1_HUMAN
A:
[73-130]
---------------------------------------------------------------------------------------------------------------------------------
R
R
E
G
N
I
Q
Y
L
F
----
L
E
Y
C
S
G
G
E
L
F
D
R
I
E
P
D
I
G
M
P
E
P
D
A
-----
Q
R
F
F
H
--
Q
L
M
A
---
G
V
V
Y
L
---
H
G
I
G
I
T
---
H
R
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
54.09
27%
-42
- C2 -
4FTU
3
CHK1_HUMAN
A:
[73-130]
---------------------------------------------------------------------------------------------------------------------------------
R
R
E
G
N
I
Q
Y
L
F
----
L
E
Y
C
S
G
G
E
L
F
D
R
I
E
P
D
I
G
M
P
E
P
D
A
-----
Q
R
F
F
H
--
Q
L
M
A
---
G
V
V
Y
L
---
H
G
I
G
I
T
---
H
R
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
53.88
27%
-43
- C2 -
4FT5
2
CHK1_HUMAN
A:
[73-130]
---------------------------------------------------------------------------------------------------------------------------------
R
R
E
G
N
I
Q
Y
L
F
----
L
E
Y
C
S
G
G
E
L
F
D
R
I
E
P
D
I
G
M
P
E
P
D
A
-----
Q
R
F
F
H
--
Q
L
M
A
---
G
V
V
Y
L
---
H
G
I
G
I
T
---
H
R
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------