@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0049: (2016-03-11 )
MKNMNKSVGKFLSRKLEEQSMKVADSSMSKACFMFVYEPKSPFVKMQEKNENK
Atome Classification :
(19 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------.......-..10.--.----.....-------.20..-----.-.-------....-30-.....-----------..------..40........50..------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------MK
N
M
N
K
S
-
V
G
K
F
L
--
S
----
R
K
L
E
E
-------
Q
S
M
K
V
-----
A
-
D
-------SSMS-
K
--
A
C
F
M
F
-----------
V
Y------EPKSP
F
V
K
MQEKNENK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
74.42
37%
-88
- C4 -
2YH5
-
A:
[25-59]
---------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
V
W
Q
R
L
--
P
----
A
A
L
E
K
-------
V
G
M
K
V
-----
T
-
D
-------
S
T
R
S
-
Q
--
G
N
M
A
V
-----------
T
Y
------
K
P
L
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
66.12
20%
-36
* C4 *
2W69
6
PA_I75A3
A:
[7-203]
---------------------------------------------------------------------------------------------------------------------------------------------A
M
E
D
F
V
R
Q
C
F
N
P
M
-
I
V
E
L
A
--
E
----
K
A
M
K
E
Y
GEDLKI
E
T
N
K
F
-----
A
-
A
-------
I
C
T
H
L
E
--
V
C
F
M
Y
-----------
S
D
FHFINE
Q
G
E
S
I
V
V
E
L
D
D
P
N
A
L
K
HRFEIIEGRD
R
T
M
A
W
T
V
V
N
S
I
C
N
T
TGAEKPKFLPDLYDYKEN
R
F
I
E
I
G
V
T
RRE
V
H
I
Y
Y
L
E
K
A
N
K
I
KST
H
I
H
I
F
S
FT
G
E
E
M
A
TKADYTLD
E
E
S
R
A
R
I
K
T
R
L
F
T
I
R
Q
E
M
A
N
R
GL
W
D
S
F
R
Q
S
ER-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
62.99
17%
-5
- C6 -
4OWT
-
SOSB1_HUMAN
B:
[5-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------
T
F
V
K
D
-
I
L
I
F
I
--
V
----
L
E
T
G
V
-------
R
T
C
K
V
-----
A
-
D
-------
K
T
G
S
-
I
--
N
I
S
V
W
D
D
V
G
N
L
IQPG
D
I
I
------
R
L
L
T
L
Y
T
D
L
Q
K
I
G
E
F
C
M
V
Y
S
EVPNFS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
61.71
13%
-31
- C4 -
3MTV
-
?
A:
[1-203]
---------------------------------A
D
V
Y
D
IGRG
A
V
M
Y
V
A
GG
K
V
S
W
A
P
RGGNEVKFEPVPKEL
K
L
V
A
N
R
L
H
T
S
FPPHHVVDMSK
F
T
F
I
T
PGSGVSMRVEYQYGCLPADTVPEGNCWWRLLDSLP
P
E
V
Q
Y
K
E
I
R
H
A
N
Q
F
G
Y
Q
T
K
H
G
V
-
P
G
K
Y
L
--
Q
----
R
R
L
Q
V
-------
N
G
L
R
A
-----
V
-
T
-------
D
T
H
G
-
P
--
I
V
I
Q
Y
-----------
F
S
------
V
K
E
S
W
I
R
H
L
K
L
V
E
E
P
S
L
P
GFEDL
L
R
I
R
V
E
PNTSPLAGKD
E
K
I
F
R
FGSHKWYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
61.36
19%
-13
- C5 -
2WBX
1
CAD23_MOUSE
A:
[1-102]
-----------------------------------------------------------------------------------------------------------------------------M
Q
V
N
R
L
P
F
F
TNHFFD
T
Y
L
L
I
S
E
D
T
P
V
G
S
S
-
V
T
Q
L
L
--
A
----
R
D
M
D
N
-------
D
P
L
V
F
-----
G
-
V
-------
S
G
-
E
-
E
--
A
S
R
F
F
-----------
A
V
------
E
P
D
T
G
V
V
W
L
R
Q
P
L
D
R
E
TKS
E
F
T
V
E
F
S
V
S
DHQ
G
V
I
T
R
K
V
N
I
Q
V
G
D--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
58.52
22%
10
* C6 *
2XBG
-
YC48L_THEEB
A:
[38-345]
AIPALDYNP
W
E
A
I
Q
L
PTT
A
T
I
L
DMSFIDRH
H
G
W
L
V
G
V
NA
T
L
M
E
T
RDGGQ
T
W
E
P
R
T
L
V
L
DHSDYRFN
S
V
S
F
QGN
E
G
W
I
V
G
E
P
P
I
M
L
H
T
TDGGQ
S
W
S
Q
I
P
L
DPKLPGSPR
L
I
K
A
LGNG
S
A
E
M
I
T
NVG
A
I
Y
R
T
KDSGK
N
W
Q
A
LVQEAIGV
M
R
N
L
N
R
S
P
S
G
E
Y
V
--
A
----
V
S
---------------------------------
S
-
R
--
G
S
F
Y
S
-----------
T
W
------
E
P
G
Q
T
A
W
E
P
H
N
R
T
T
S
R
RLH
N
M
G
F
T
PDG
R
L
W
M
I
V
NGG
K
I
A
F
S
D
PDNSENWGELLSPLRRNSVGFL
D
L
A
Y
RTPN
E
V
W
L
A
G
G
AG
A
L
L
C
S
QDGGQ
T
W
Q
Q
DVDVKKVP
S
N
F
Y
K
ILFFSPD
Q
G
F
I
L
G
Q
KG
I
L
L
R
Y
V
T
DLTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
54.04
20%
-10
- C4 -
2I7U
-
?
A:
[1-62]
---------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
L
R
E
E
-
A
A
K
L
F
--
E
E
W
--
K
K
L
A
E
-------
E
A
A
K
L
-----
L
-
E
GGGGGGG
G
E
L
M
-
K
--
L
C
E
E
A
-----------
A
K
------
K
A
E
E
L
F
K
L
A
E
E
R
L
K
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
52.09
26%
-136
- C2 -
3P0W
-
?
A:
[442-460]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
M
Q
-
Y
--
L
V
P
G
W
-----------
T
Y
------
D
P
K
R
P
S
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
50.29
25%
-31
- C4 -
3S4R
1
VIME_HUMAN
A:
[11-32]
---------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
E
L
N
D
R
-
F
A
N
L
I
D
K
V
----
R
F
L
E
Q
-------
Q
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
47.92
30%
-22
- C4 -
3QAY
1
?
A:
[30-49]
------------------------------------------------------------------------------------------------------------------------------------------------------
Y
N
K
S
-
L
A
P
V
L
--
A
----
D
T
F
R
K
-------
E
G
H
K
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
47.28
15%
3
- C4 -
4O6Y
3
ACFR2_ARATH
A:
[10-219]
--------------------------------------------------------------P
I
F
M
V
V
R
V
L
G
F
I
I
A
A
L
V
L
T
W
T
VHYRGGLALSSDN
K
D
H
I
F
N
V
H
P
V
M
M
V
I
G
LI
L
F
N
G
E
A
M
L
AYKS
V
Q
G
T
K
N
L
K
K
L
V
H
L
T
L
Q
L
T
A
F
I
L
S
L
I
G
V
W
A
-
A
L
K
F
H
--
I
----
D
K
G
I
E
-------
N
F
Y
S
L
-----
H
-
S
-------
W
L
G
L
-
A
--
C
L
F
L
F
-----------
A
F
------
Q
W
A
A
G
F
V
T
Y
W
Y
P
G
G
S
R
N
S
R
A
S
L
M
P
W
H
V
F
L
G
I
S
I
Y
A
L
A
L
V
T
A
T
T
G
I
L
E
K
V
T
F
L
Q
V
N
QVITRYS
T
E
A
M
L
V
N
T
M
G
V
L
I
L
I
L
G
G
F
V
I
L
G
V
V
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
46.05
30%
-33
- C3 -
2AHQ
-
?
A:
[42-61]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
--
A
----
N
I
L
K
E
-------
K
G
F
K
V
-----
A
-
R
-------
R
T
V
A
-
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
40.57
9%
-14
- C4 -
2DBS
-
?
A:
[7-86]
---------------------------------------------------------------------------------------------------------------------------------R
L
A
E
L
D
G
V
L
M
Q
Y
L
L
E
ADL
L
R
E
L
P
P
T
-
Y
R
L
V
L
--
L
PLDE
P
E
V
A
A
-------
Q
A
L
A
W
-----
A
M
E
-------
A
P
N
P
-
E
G
W
P
S
V
Y
A
-----------
L
F
------
L
Q
G
R
P
I
R
L
L
L
L
G
K
E
V
E
V
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
35.50
21%
23
- C4 -
1T6A
1
?
A:
[98-111]
-------------------------------------------------------------------------------------------------------------------------------------------------------
A
N
E
-
F
S
K
W
L
--
A
----
K
T
L
G
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
33.18
23%
70
- C- -
1BAX
-
GAG_MPMV
A:
[11-41]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
E
Q
L
--
K
----
Q
A
L
K
T
-------
R
G
V
K
V
-----
K
-
Y
-------
A
D
L
L
----
K
F
F
D
F
-----------
V
K
------
D
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
29.00
11%
14
* C5 *
2D3Q
1
?
A:
[4-442]
----------------TILPLNNIQGDILVGMKKQ
K
E
R
F
V
F
F
Q
V
ND
A
T
S
F
K
T
A
L
K
T
Y
V
P
E
RITS
A
A
I
L
I
SDPSQQPL
A
F
V
N
L
G
F
S
N
T
G
L
Q
A
L
GITDDLGDAQFPDGQFADAANLGDDLSQWVAPFTGTTIH
G
V
F
L
I
G
S
DQ
D
D
F
L
D
Q
F
T
D
D
I
S
S
T
-
F
G
S
S
I
--
T
----
Q
V
Q
A
L
-------
S
G
S
A
R
-----
P
-
G
-------
D
Q
A
G
-
H
--
E
H
F
G
F
-----------
L
D
------
G
I
S
Q
P
S
V
T
G
W
E
T
T
V
F
P
G
Q
A
V
V
P
PGIILTGRDGDT
G
T
R
P
SWALD
G
S
F
M
A
F
R
HFQQK
V
P
E
F
N
A
Y
T
L
A
N
AIPANSAGNLT
Q
Q
E
G
A
E
F
L
G
A
R
M
F
GRWKSGAPIDLAPTADD
P
A
L
G
A
DPQRNNNFDYSDTLTDETRCPFGA
H
V
R
K
T
N
PRQDLGGPVDTF
H
A
M
R
S
S
I
P
Y
G
P
E
T
S
D
A
E
L
A
S
GVTA
Q
D
R
G
L
L
F
V
E
Y
Q
SIIGNG
F
R
F
Q
Q
INWANNANFPFSKPITPGIEPIIGQTTPRTVGGLDPLNQNETFTVPLFVIPK
G
G
E
Y
F
F
L
P
S
I
S
A
L
T
ATIAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
28.10
11%
1
- C4 -
2ZXR
1
RECJ_THET8
A:
[1-658]
---------------------------------------------------------------------------------------------MRDR
V
R
W
R
V
L
S
LPP
L
A
Q
W
R
E
V
M
A
A
L
EVG
P
E
A
A
L
A
Y
W
H
R
GFRR
K
E
D
L
D
PPLALLP
L
K
G
L
R
E
A
-
A
A
L
L
E
--
E
----
A
L
R
Q
G
-------
K
R
I
R
V
H
G
D
YD
A
-
D
-------
G
L
T
G
-
T
--
A
I
L
V
R
-----------
G
L
------
A
A
L
G
A
D
V
H
P
F
I
P
S
D
L
F
L
T
V
DCG
V
E
V
I
VTDHHTLVVHPALTPDLK
E
K
P
T
G
A
G
V
A
F
L
L
L
W
A
L
H
E
R
L
GLPPPLEY
A
D
L
A
A
V
G
T
I
A
D
VAPLW
G
W
N
R
A
L
V
K
E
G
L
A
R
IPASSW
V
G
L
R
L
L
A
E
A
V
GYTGK
A
V
E
V
A
F
R
I
A
P
R
I
N
A
A
S
R
L
GE
A
E
K
A
L
R
L
L
L
TDD
A
A
E
A
Q
A
L
V
G
E
L
H
R
L
N
A
R
R
Q
T
L
E
E
A
M
L
R
K
L
L
PQADPEAK
A
I
V
L
L
D
PEGHPGV
M
G
I
V
A
S
R
I
L
E
A
T
L
R
P
V
F
L
V
A
QG
K
G
T
V
R
S
L
APIS
A
V
E
A
L
R
S
A
EDLLL
R
Y
G
G
H
KE
A
A
G
F
A
M
DEAL
F
P
A
F
K
A
R
V
E
A
Y
A
A
R
F
P
D
P
V
R
E
V
A
L
LDLLPEPGL
L
P
Q
V
F
R
E
L
ALLEPYGEGNPE
P
L
F
L
L
F
G
APEE
A
R
R
L
G
EGR
H
L
A
F
R
L
KG
V
R
V
L
A
W
K
QGDLALPP
E
V
E
V
AGLLSENAWNG
H
L
A
Y
E
V
Q
A
VDLRKP
E
A
L
E
G
G
I
APF
A
Y
P
L
P
L
L
E
A
L
A
R
A
R
L
GEG
V
Y
V
P
EDN
P
E
G
L
D
Y
A
W
K
A
GFRLLPPEEAGLWLGLPP
R
P
V
L
GRR
V
E
V
A
L
G
REARARLSAPPVLHTPE
A
R
L
K
A
L
V
H
R
R
L
L
F
A
Y
E
R
RH
P
G
L
F
S
E
A
L
L
A
Y
W
E
V
N
R
10
HHSearch
23.40
12%
18
- C4 -
2JAK
-
2A5G_HUMAN
A:
[323-348]
------------------------------------------------------------------------------------------------------------------------------------------------------
I
M
E
P
-
L
F
R
Q
L
--
A
----
K
C
V
S
S
-------
P
H
F
Q
V
-----
A
-
E
-------
R
A
L
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
14.28
25%
-
- C1 -
2MSQ
-
?
A:
[4-4]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
S
C
F
G
G
-----------
C
W
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------