@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0065: (2016-03-12 )
MAQQTMGGAGAASTIDINPDEMTHIAKELLAIANEFEGVIKPAVNQLKANKYLTKGKAKKAMDKVPKANERVMELQDQYNMASSVVFDILQTMVDADRDIAEKIIAALEV
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20..-----......30.---.......40.---.......50...-...---.--------..--60.-.-......70.----------------------.-------.....-.80.....---------...90.....--...100------........110-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAQQTMGGAGA
A
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AN-KYL-TKG---
K
--------
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--
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-
D
-KVPKA
N
E
R
V
----------------------
M
-------
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L
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-YN
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---------
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VDA--
D
R
D
I
A
-------
E
K
I
I
A
A
LEV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
84.66
15%
-61
- C3 -
4AKK
3
NASR_KLEOX
A:
[36-418]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
E
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----------------------
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REIA
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ID
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QCQAS
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RQPPADEG
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YQGMQ
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NQR
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KALWR
26
Fugue
84.15
25%
-62
- C3 -
1V74
-
IMMD_ECOLX
B:
[1-87]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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---
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-
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-----------------------
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F
KL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
80.69
17%
-53
- C3 -
1AEP
-
APL3_LOCMI
A:
[6-158]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
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---
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--------
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--
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-
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A
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A
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----------------------
I
HDAATSL
N
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A
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---------
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SAQEAW
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K
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L
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A
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K---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
76.50
17%
-65
- C3 -
3GWK
1
?
C:
[1-97]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
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--
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I
A
-------
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Q
I
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
67.39
15%
-58
- C3 -
3ZBH
3
?
A:
[9-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
E
E
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R
-----
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-------
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R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
65.34
13%
-58
- C3 -
3WHJ
7
PSMD9_YEAST
A:
[3-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
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----------------------
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--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
63.92
10%
-43
- C3 -
2P7V
-
RSD_ECOLI
A:
[1-158]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
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RGSN
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AARVKHPA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
62.29
11%
-57
- C3 -
3FAV
4
ESXA_MYCTU
B:
[9-80]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
E
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-
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I
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Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
62.09
8%
-78
- C3 -
2VS0
4
ESXA_STAAM
A:
[3-85]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
K
M
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-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
56.16
10%
-36
* C3 *
1WA8
-
ESXB_MYCBO
A:
[1-99]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
55.95
8%
-60
- C3 -
3FX7
-
?
A:
[5-88]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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M
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25
Fugue
54.94
20%
-14
- C2 -
5A5T
-
?
A:
[7-605]
RP
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N
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VG
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N
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L
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SAISM
E
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EQPEKE
P
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F
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PFVD
A
F
Q
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A
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H
CDLQVRIDHTSRTLSFGSDLNYATREDAPIGPHLQSMPSEQIRNQ
L
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R-------------------
4
HHSearch
54.01
12%
-56
- C3 -
3FAV
3
ESXB_MYCTU
A:
[12-85]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
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Q
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N
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Q
K
Q
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Y
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
50.27
10%
-12
- C3 -
1RYL
-
YFBM_ECOLI
A:
[85-156]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
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A
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D--
R
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E
L
R
K
Q
F
S
I
-----
K
R
L
N
E
M
-
E
I
Y
-
P
G
V
---
T
--------
F
S
EE
L
E
G
-
Q
-
L
F
A
S
I
M
L
D
M
----------------------
E
-------
K
L
I
S
A
-
Y
R
R
M
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
45.08
15%
6
- C3 -
3H6P
1
?
A:
[31-90]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
A
A
K
---
A
G
L
M
R
H
T
I
G
Q
---
A
E
Q
Q
A
M
S
A
-
Q
A
F
-
H
Q
G
---
E
--------
S
A
--
A
A
F
-
Q
G
A
H
A
R
F
V
A
A
A
----------------------
A
-------
K
V
N
T
L
-
L
D
I
A
Q
A
N
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
44.78
16%
7
- C3 -
3H6P
-
ESXR_MYCTU
C:
[20-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
---
A
G
T
L
Q
S
L
G
A
D
---
I
A
S
E
Q
A
V
L
-
S
S
A
-
W
Q
G
---
D
--------
T
G
--
I
T
Y
-
Q
G
W
Q
T
Q
W
N
Q
A
L
----------------------
E
-------
D
L
V
R
A
-
Y
Q
S
M
S
G
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
39.20
16%
41
- C3 -
2WB7
-
?
A:
[552-663]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
E
K
I
---
N
A
T
T
K
A
M
I
N
S
---
L
Q
E
K
I
D
E
A
-
E
Q
L
L
A
K
A
K
G
-
M
NN
E
N
A
I
E
Y
A
Q
--
G
A
I
-
D
-
E
Y
K
A
A
I
N
D
L
Q
K
A
A
Q
QDD
Y
Q
M
F
L
N
Y
L
N
A
A
K
K
H
E
-------
M
A
G
D
Y
-
Y
V
N
A
A
R
K
A
---------
L
N
G
D
L
E
Q
A
K
I
--
D
A
E
K
A
-------
K
E
Y
S
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
38.62
20%
-5
* C2 *
3J3I
-
CAPSD_PCVC
A:
[68-121]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
V
V
-----
R
F
G
R
Q
I
A
S
L
---
L
Q
Y
F
E
N
M
H
S
P
---
A
L
D
I
I
A
C
D
-
K
F
L
-
L
K
Y
---
Q
--------
I
Y
--
G
D
I
-
D
-
R
D
P
A
F
G
E
N
T
----------------------
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
38.00
10%
2
- C3 -
3OGI
-
ES6L7_MYCTU
B:
[5-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
M
T
D
P
H
A
M
R
-----
D
M
A
G
R
F
E
V
H
---
A
Q
T
V
E
D
E
A
R
R
---
M
W
A
S
A
Q
N
I
S-----
S
G
---
M
--------
A
E
--
A
T
S
L
D
-
T
M
A
Q
M
N
Q
A
F
----------------------
R
-------
N
I
V
N
M
-
L
H
G
V
R
D
G
L
---------
V
R
D
A
N
N
Y
E
Q
Q
--
E
Q
A
S
Q
-------
Q
I
L
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
31.99
17%
9
- C3 -
1EZE
-
APO1B_PAPHA
A:
[6-35]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
L
D
K
L
K
E
F
---
G
N
T
L
E
D
K
A
W
E
---
V
I
N
R
I
K
Q
S
-
E
F
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------