@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0069: (2016-03-12 )
MTVTSNINSELADGFQGYTDVRKITVNSTVDVGVSGSLTAVLGQVGSSFGLPGAIGGLGVGLVLDTILSLNGTKDTWKNSINEKMQDLEDWFRVEAK
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........--------30........40........50--.-..-.....60.---.......70.-----.......80.......-.90......---------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
VTSNI
N
S
E
L
A
D
G
F
QGY
T
D
V
R
K
I
T
VN
S
T
--------
V
D
VGVS
G
S
L
T
A
V
L
G
Q
V
G
SSFGL--P-G
A
-
I
G
G
L
G
V
G
L
---
V
L
D
T
I
L
SLNG-----T
K
D
T
W
K
N
S
I
N
E
K
M
Q
D
L
-
E
D
W
F
RVEAK---------------------------------------------------------------------------------------------------------------------------------
30
Fugue
83.89
22%
-58
- C4 -
4RIC
5
FAN1_HUMAN
A:
[1-631]
TGHP
Y
Y
L
R
S
F
L
V
V
L
K
T
V
L
E
N
E
D
D
M
L
L
F
D
E
Q
E
K
G
I
V
T
K
F
Y
Q
LS
A
T
G
Q
K
L
Y
V
R
L
F
Q
R
KL
S
W
I
K
MTKLEYEEIALDL
T
P
V
I
E
E
L
T
N
A
GFLQTESELQE
L
S
E
V
L
E
L
LS
A
P
E
L
K
S
L
A
K
T
F
HLVNPNGQ
K
Q
Q
L
V
D
A
F
L
K
L
A
K
Q
R
S
V
I
G
A
V
I
L
K
R
A
K
A
L
A
G
Q
S
V
R
I
C
K
G
P
R
A
V
F
S
R
I
L
L
L
F
S
LTDSMEDEDAACGGQGQLS
T
V
L
L
V
NLGR
M
E
F
P
S
Y
T
I
N
R
K
T
HIFQD
R
D
D
L
I
R
Y
A
A
A
T
H
M
L
S
D
I
S
S
A
M
A
N
GN
W
E
E
A
K
E
L
A
Q
C
A
K
R
D
W
N
R
L
KNH
P
S
L
R
C
H
E
D
LP
L
F
L
R
C
F
T
V
G
W
I
Y
T
R
I
L
S
R
F
V
E
I
L
Q
R
L
HM
Y
E
E
A
V
R
E
L
E
S
L
L
S
Q
RIYCPDS
R
G
R
W
W
D
R
L
A
L
N
L
H
QHLKR
L
E
P
T
I
K
C
I
T
E
G
L
A
DPEVRT
G
H
R
L
S
L
Y
Q
R
A
V
R
L
R
E
SPS
C
K
K
F
K
H
L
F
Q
Q
L
P
E
--
M
A
V
Q
D
V
K
H
V
T
I
T
G
R
L
CK
S
V
F
V
M
V
L
C
S
V
E
E
L
A
L
A
H
Y
R
R
S
G
F
D
Q
G
I
HG
E
-
G
S
-
T
F
S
T
L
Y
G
L
---
L
L
W
D
I
I
F
M
D
G
-----
I
P
D
V
F
R
N
A
C
Q
A
F
P
L
D
L
C
T
D
S
F
F
T
S
R
R
P
A
L
E
A
R
L
Q
L
I
H
D
AP
E
E
S
L
R
A
W
V
A
A
T
W
H
E
Q
EGRVASLVSWDRFTS
L
Q
Q
A
Q
D
L
V
S
C
L
G
G
P
V
L
S
G
V
C
R
H
L
A
A
DFRHCRGGLPD
L
V
V
W
N
SQSR
H
F
K
L
V
E
V
K
G
PNDRLS
H
K
Q
M
I
W
L
A
E
L
Q
K
L
G
A
E
V
E
V
C
H
V
V
A
V
3
PsiBlast_PDB
76.73
38%
20
- C8 -
1ESE
1
ESTA_STRSC
A:
[250-292]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
N
T
A
C
--
D
-
G
A
-
D
R
G
I
G
-
G
L
---
L
E
D
S
Q
L
E
L
L
G
-----
T
K
I
P
W
Y
A
H
P
N
D
K
G
R
D
I
-
Q
-----------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
76.69
38%
20
* C8 *
1ESC
-
ESTA_STRSC
A:
[250-292]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
N
T
A
C
--
D
-
G
A
-
D
R
G
I
G
-
G
L
---
L
E
D
S
Q
L
E
L
L
G
-----
T
K
I
P
W
Y
A
H
P
N
D
K
G
R
D
I
-
Q
-----------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
76.24
38%
17
- C8 -
1ESD
1
ESTA_STRSC
A:
[250-292]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
N
T
A
C
--
D
-
G
A
-
D
R
G
I
G
-
G
L
---
L
E
D
S
Q
L
E
L
L
G
-----
T
K
I
P
W
Y
A
H
P
N
D
K
G
R
D
I
-
Q
-----------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
75.63
29%
-71
* C6 *
1BRW
3
PDP_GEOSE
B:
[72-145]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
I
R
G
V
K
V
D
K
H
--------
S
T
G
G
V
G
D
T
T
T
L
V
L
G
P
L
V
A
S
V
G
V
--
P
-
V
A
K
M
S
G
R
G
L
G
H
TGG
T
I
D
K
L
E
S
V
P
G
FHVEI
S
K
D
E
F
I
R
L
V
N
E
------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
62.08
44%
-53
- C7 -
1WDL
-
FADA_PSEFR
C:
[355-383]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
G
T
L
L
N
V
M
K
Q
N
G
G
T
F
G
L
--
S
-
T
M
-
C
I
G
L
G
Q
G
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
61.75
44%
-50
- C7 -
1WDK
1
FADA_PSEFR
C:
[355-383]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
G
T
L
L
N
V
M
K
Q
N
G
G
T
F
G
L
--
S
-
T
M
-
C
I
G
L
G
Q
G
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
61.25
36%
-45
- C7 -
2W6D
5
BDLP_NOSP7
A:
[543-584]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
W
K
N
I
L
L
N
Y
F
--------
T
V
I
G
I
G
G
I
I
T
A
V
T
G
I
L
L
G
P
I
G
F
-----
A
-
L
L
G
L
G
V
G
F
---
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
61.24
44%
-51
- C7 -
2D3T
1
FADA_PSEFR
C:
[355-383]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
G
T
L
L
N
V
M
K
Q
N
G
G
T
F
G
L
--
S
-
T
M
-
C
I
G
L
G
Q
G
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
60.79
36%
-45
- C7 -
2J68
-
BDLP_NOSP7
A:
[543-584]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
W
K
N
I
L
L
N
Y
F
--------
T
V
I
G
I
G
G
I
I
T
A
V
T
G
I
L
L
G
P
I
G
F
-----
A
-
L
L
G
L
G
V
G
F
---
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
59.24
44%
-46
- C7 -
1WDM
1
FADA_PSEFR
C:
[355-383]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
G
T
L
L
N
V
M
K
Q
N
G
G
T
F
G
L
--
S
-
T
M
-
C
I
G
L
G
Q
G
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
56.89
36%
-46
- C7 -
2J69
-
BDLP_NOSP7
A:
[543-584]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
W
K
N
I
L
L
N
Y
F
--------
T
V
I
G
I
G
G
I
I
T
A
V
T
G
I
L
L
G
P
I
G
F
-----
A
-
L
L
G
L
G
V
G
F
---
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
53.61
19%
19
* C7 *
5CMZ
-
?
B:
[2-33]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-----
T
W
E
E
W
D
K
K
I
E
E
L
I
K
K
S
-
E
E
L
I
K
K
I
E
E
Q
I
K
K
Q
E---------------------------------------------------------------------------------------------------------------------------
24
Fugue
49.46
13%
10
- C7 -
2VOF
1
BBC3_MOUSE
B:
[2-24]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
W
A
R
E
I
G
A
Q
L
R
R
I
-
A
D
D
L
N
A
Q
Y
E
---------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
46.36
27%
15
- C7 -
3TEK
-
?
A:
[83-104]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
F
R
E
T
S
R
E
L
F
D
G
L
-
K
K
W
F
F
E
E
A
----------------------------------------------------------------------------------------------------------------------------------
25
Fugue
45.92
23%
34
- C7 -
3OIQ
-
DPOA_YEAST
B:
[216-245]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
K
L
Q
S
-----
R
K
L
R
Y
A
N
D
V
Q
D
L
L
D
D
V
-
E
N
S
P
V
V
A
T
----------------------------------------------------------------------------------------------------------------------------------
22
Fugue
45.44
18%
94
- C7 -
3VU5
-
?
B:
[4-23]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
E
E
W
D
K
K
I
E
E
Y
T
K
K
I
-
E
E
L
I
K
K
S
-----------------------------------------------------------------------------------------------------------------------------------
28
Fugue
44.67
13%
33
- C7 -
4HNJ
-
C:
[2-23]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
W
A
R
E
I
G
A
Q
L
R
R
M
-
A
D
D
L
N
A
Q
Y
----------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
44.00
27%
-60
- C6 -
2KJF
-
CCLA_CARML
A:
[14-44]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
S
L
I
N
A
G
L
T
V
G
S
--
I
I
S
I
-
L
G
G
V
T
V
G
-----
L
S
G
V
F
T
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
43.09
19%
50
- C7 -
4CIM
2
?
P:
[1-21]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
D
P
L
G
Q
A
L
R
A
I
G
D
E
F
-
E
T
R
F
R
-------------------------------------------------------------------------------------------------------------------------------------