@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0071: (2016-03-12 )
LAEVDKSTIGEVEGVTFQSYFLIKNMLHTRVVGDLEKRLPVTLEKMVEYVESNRKEIITPIFIVLNYVGNVPYVDVYVGIDPYDE
Atome Classification :
(20 SA)
--------------------------........-------.10......----..20.....--...30..-...----...------------------40......-..50..-....-.----.-60.......------.70....-....80....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------LAEV
D
K
ST-------IGEVEGV
T
F
----
Q
S
Y
F
L
I
K
N
M
--
L
H
T
R
V
V
G
-
D
L
E
----KRL------------------
P
V
T
L
E
K
M
V
-
E
Y
V
ESN-
R
K
E
I
-
I
----
T
-
P
I
F
I
V
L
N
Y
V------GNV
P
Y
V
D
-
V
Y
VGIDPYDE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
65.61
23%
-71
- C3 -
1X2I
-
?
A:
[2-69]
--------------------------
A
L
T
L
A
E
R
Q
-------
R
L
I
V
E
G
L
P
H
----
V
S
A
T
L
A
R
R
L
--
L
K
H
F
--
G
-
S
V
E
----
R
V
F
------------------
T
A
S
V
A
E
L
M
-
K
-
V
E
G
I
-
G
E
K
I
-
A
----
K
-
E
I
R
R
V
I
T
---------------------
A
P
Y
I
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
65.36
19%
-63
- C3 -
1VK5
8
RDM1_ARATH
A:
[36-156]
-------------GSL
L
R
R
A
E
M
Y
Q
D
Y
M
K
Q
V
P
I
P
T
NRG
S
L
I
P
F
T
S
W
V
G
L
S
I
----
S
M
K
Q
L
Y
G
Q
P
--
L
H
Y
L
T
N
V
-
L
L
Q
----
R
W
D
Q
S
R
FGTDSEEQRLDSIIH
P
T
K
A
E
A
T
I
-
W
L
V
E
E
I
-
H
R
L
T
-
P
----
S
-
H
L
H
M
A
L
L
W
R
------
S
D
P
M
Y
H
S
-
F
---
I
D
P
I
F
P
E---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
63.65
14%
-50
- C3 -
2JPF
-
?
A:
[1-106]
----------------KQQ
L
Q
E
H
A
PS
H
A
N
L
D
V
K
W
-------
L
D
G
L
R
A
G
S
M
ALQ
G
D
V
K
V
W
M
Q
N
L
E
D
L
H
T
R
R
P
D
-
E
F
T
----
A
R
L
------------------
Q
Q
S
T
D
A
L
Y
-
S
H
L
E
A
Q
-
W
A
K
Q
-
H
----
G
-
T
P
P
T
A
S
D
V
V
------
G
M
P
Q
W
Q
E
-
Y
T
A
M
L
R
E
R
F
A
GLDTI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
62.96
16%
-63
- C3 -
4G9K
1
NDI1_YEAST
A:
[1-471]
M
K
V
I
D
P
Q
HSDK
P
N
V
L
I
L
G
SG
W
G
A
I
S
F
L
K
H
I
D
T
K
K
-------
Y
-
N
V
S
I
I
S
P
----
R
S
Y
F
L
F
T
P
L
--
L
P
S
A
P
V
G
-
T
V
D
E
---
K
S
I
------------------
I
E
P
I
V
N
F
A
-
L
K
K
K
G
N
-
V
T
Y
Y
-
E
----
A
-
E
A
T
S
I
N
P
D
R
------
N
T
V
T
I
K
S
-
L
S
A
V
S
Q
L
Y
Q
P
ENHLGLHQA
E
P
A
E
I
K
Y
D
Y
L
I
S
AVGAEPNTFGIPGVTDYGHFLKE
I
P
N
S
L
E
I
R
R
T
F
A
A
N
L
E
K
A
N
L
LPKGD
P
E
R
R
R
L
L
S
I
V
V
V
G
GG
P
T
G
V
E
A
A
G
E
L
Q
D
Y
V
H
Q
DLRKFL
P
A
L
A
E
E
V
Q
I
H
L
V
E
ALPIVLNMFE
K
K
L
S
S
Y
A
Q
S
H
L
E
N
T
S
I
K
V
H
L
R
T
A
V
AKVEEK
Q
L
L
A
K
T
K
H
EDG
K
I
T
E
E
T
I
P
Y
G
T
L
I
W
A
T
G
N
K
A
R
P
V
I
T
D
L
F
K
K
I
P
EQNSSKRGLAVNDFLQVKGSNN
I
F
A
I
G
DNAFAGLPPT
A
Q
V
A
H
Q
E
A
E
Y
L
A
K
N
F
D
K
M
A
Q
IPNFQK
I
D
L
L
F
E
E
N
N
F
K
P
F
K
Y
N
D
L
G
A
L
A
Y
LGSE
R
A
I
A
T
I
R
S
GK
R
T
F
Y
T
G
G
G
L
M
T
F
Y
L
W
R
I
L
Y
L
S
M
ILS
A
R
S
R
L
K
V
F
F
D
W
I
K
L
A
F
F
K
R
D
F
F
KGL
6
HHSearch
62.91
9%
-185
- C3 -
1R8E
4
BMRR_BACSU
A:
[217-277]
--------------------------------------------------------------
Y
--
A
C
I
A
Y
N
F
-
S
P
-----
E
H
Y
------------------
F
L
N
L
Q
K
L
I
-
K
Y
I
A
D
R
-
Q
L
T
V
-
V
----
S
-
D
V
Y
E
L
I
I
P
I
HYSPKK
Q
E
E
Y
R
V
E
-
M
K
I
R
I
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
62.07
12%
-175
- C3 -
1JYH
-
SBMC_ECOLI
A:
[94-155]
--------------------------------------------------------------
Y
--
A
V
A
V
A
R
V
-
V
G
-----
D
D
F
------------------
A
K
P
W
Y
Q
F
F
N
S
L
L
Q
D
S
-
A
Y
E
M
-
L
----
P
K
P
C
F
E
V
Y
L
N
N
GAE---
D
G
Y
W
D
I
E
-
M
Y
V
A
V
Q
P
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
61.16
9%
-163
- C3 -
3B49
1
?
A:
[147-211]
-------------------------------------------------------------
E
C
--
V
Q
M
M
H
V
G
-
P
F
-----
S
E
E
------------------
V
H
T
V
A
E
M
H
-
Q
F
M
E
T
E
-
G
L
R
N
-
D
TGAI
R
-
K
H
H
E
I
Y
L
S
D
PRKAN-
P
E
K
M
K
T
I
-
L
R
L
P
V
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
60.06
11%
-144
- C3 -
3GK6
1
?
A:
[114-170]
-------------------------------------------------------------
K
Y
--
V
T
F
S
A
T
G
-
E
M
P
----
Q
V
V
------------------
I
D
L
W
N
E
V
W
-
N
Y
F
A
--C
P
H
K
R
-
A
Y---
T
-
T
D
F
E
Y
Y
K
S
A
---------
N
T
V
E
-
I
S
I
A
V
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
53.84
7%
-46
- C3 -
3E0H
-
?
A:
[95-158]
------------------------------------------------------------
G
K
A
--
A
S
S
L
Y
I
G
-
P
-
Y
----
G
E
I
------------------
E
A
V
Y
D
A
L
M
-
K
W
V
D
D
N
-
G
F
D
L
-
S
----
G
-
E
A
Y
E
I
Y
L
D
N
PAETA-
P
D
Q
L
R
T
R
-
V
S
L
M
L
H
E
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
51.86
7%
-154
- C3 -
3LUR
5
?
A:
[96-157]
-------------------------------------------------------------
K
Y
--
M
V
F
E
A
Q
G
-
A
V
P
K
A
V
Q
Q
K
M
------------------
E
E
V
H
H
Y
I
H
-
Q
Y
Q
----
A
N
T
V
K
S
----
A
-
P
F
F
E
L
Y
Q
D
G
DTT---
S
E
K
Y
I
T
E
-
I
W
M
P
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
48.90
8%
-79
- C2 -
2EK0
1
?
A:
[1-90]
------------------------M
E
T
L
R
V
S
S
K
S
-------
R
P
N
S
V
A
G
A
I
----
A
A
M
L
R
T
K
G
E
--
V
E
V
Q
A
I
G
P
Q
A
V
----
N
Q
A
------------------
V
K
A
I
A
I
A
R
-
G
Y
I
A
P
D
-
N
L
D
L
-
V
----
V
-
K
P
A
F
V
K
L
E
L
------
E
N
E
E
R
T
A
-
L
K
F
S
I
K
A
H
P
L
ET--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
46.49
40%
-88
- C3 -
3ELE
2
?
A:
[193-228]
-------------------------------------------------------------------------------------------------------
T
I
K
K
L
S
-
D
L
L
E
K
K
-
S
K
E
I
-
G
----
R
-
P
I
F
I
----
I
------
A
D
E
P
Y
R
E
I
V
Y
D
G
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
43.66
3%
-124
- C3 -
1D5Y
-
ROB_ECOLI
A:
[221-288]
-------------------------------------------------------------
E
Y
--
V
M
F
T
Y
E
G
-
L
-
G
----
T
G
V
------------------
Q
E
F
I
L
T
V
Y
G
T
C
M
P
M
L
-
N
L
T
R
-
R
K---
G
-
Q
D
I
E
R
Y
Y
P
A
EDDR--
P
I
N
L
R
C
E
-
L
L
I
P
I
R
R
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
43.00
27%
-41
* C4 *
4MZU
1
?
A:
[166-205]
-------------------------------
K
L
Q
-------
M
S
K
V
K
G
V
S
L
----
H
K
F
H
L
V
N
D
L
--
R
G
N
L
S
V
G
-
E
F
E
----
K
D
I
------------------
P
F
T
P
K
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
41.59
27%
-54
- C4 -
4ZU4
3
?
A:
[10-49]
-------------------------------
K
L
Q
-------
M
S
K
V
K
G
V
S
L
----
H
K
F
H
L
V
N
D
L
--
R
G
N
L
S
V
G
-
E
F
E
----
K
D
I
------------------
P
F
T
P
K
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
40.37
44%
-75
- C1 -
3LLO
-
A:
[1-35]
-------------------------------------------------------------------------------------------------------------------------------
S
-
P
S
Y
T
V
L
---------
G
Q
L
P
D
T
D
-
V
Y
I
D
I
D
A
Y
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
39.44
13%
7
- C3 -
2L9D
-
?
A:
[71-94]
---------------------------------------------------------------------------
K
----
D
T
N
------------------
P
E
G
F
N
Q
L
M
-
H
F
A
T
E
N
-
Q
L
N
I
-
L
----
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
34.87
19%
30
* C3 *
4G1A
4
?
A:
[2-27]
----------------------------------------------------------------------
I
A
-
A
L
E
----
Q
K
I
------------------
A
-
A
L
E
Q
K
C
-
A
A
C
E
Q
K
-
I
A
A
L
-
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
34.84
19%
7
- C3 -
1BH1
1
?
?:
[1-26]
---------------------------------------------------------------------
G
I
G
-
A
V
L
----
K
V
L
------------------
T
T
G
L
P
A
L
I
-
S
W
I
K
R
K
-
R
Q
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
34.15
18%
71
- C3 -
1QYS
-
?
A:
[26-47]
---------------------------------------------------------------------------
E
----
S
E
L
------------------
Q
K
V
L
N
E
L
M
-
D
Y
I
K
K
Q
-
G
A
K
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------