@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0097: (2016-03-12 )
MSVISIILVVLIAFLAGIEGILDEFQFHQPLIACTLIGLVTGNLTACIILGGTLQMIALGWANIGAAVAPDAALASVASAIILVLGGQGVAGIPSAIAIAIPLAVAGLFLTMIVRTLAVPIVHLMDRAAEKGNIRSVEWLHISAICMQGVRIAIPAAALLFIPADSVQSFLEAMPAWLTDGMAIGGGMVVAVGYALVINMMATKEVWPFFVIGFVVAAISQLTLIAIGALGVALALIYLNLSKMGGGNSNGGGGGNSRDPLGDILNDY
Atome Classification :
(20 SA)
---------------.........10......-----..20........30........--40........50--........---60--..----......-----.70.-------------.......80........90..-......100.......110......--.120.......130---------.........140.......150.--------......160.......170...-....180--.......190.......200.......-210.....---..220.......230.......240.......250.......260......---------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------
M
S
V
I
S
I
I
L
V
V
L
I
A
F
L
A
G
-----
I
E
G
I
L
D
E
F
Q
FH
Q
P
L
I
A
C
T
L
I
G
L
--VTGN
L
T
A
C
I
I
LG--G
T
L
Q
M
I
A
L
---G---WA----NIGAAV-----A
P
D
A
-------------
A
L
A
S
V
A
S
A
I
I
L
V
LGGQGVAGI-P
S
A
I
A
I
A
I
P
L
A
V
A
G
L
F
L
T
M
I
V
R
T
L
A
--
V
P
I
V
H
L
M
D
R
AAE-----------KGNI
R
S
V
E
W
L
H
I
S
A
I
C
MQG
V
R
I
A--------IP
A
A
A
L
L
F
IP
A
D
S
V
Q
S
F
L
E
A
M
P
-
A
W
L
TDGM--AIGG
G
M
V
V
A
V
G
Y
A
L
V
I
N
M
M
ATKE
V
W
P
F
-
F
V
I
G
F
V
V
A
---
A
I
S
Q
L
T
L
I
A
I
G
A
L
G
V
A
L
A
L
I
Y
L
N
L
S
KMGGGNSNGGGGGNSR
D
P
L
G
D
I
L
NDY---------------
19
Fugue
93.91
22%
-141
- C1 -
4WBX
-
?
C:
[12-390]
RFPFPVGEPDFIQGD
E
A
I
A
R
A
A
I
L
A
G
C
R
F
Y
A
G
YPITP
A
S
E
I
F
E
A
M
A
L
Y
M
P
L
V
D
G
V
V
I
Q
M
ED
E
I
A
S
I
A
A
A
I
G
A
S
WA
G
A
K
A
M
T
A
T
SGP
G
---
F
S
LMQE
N
I
G
Y
A
V
-----
M
T
E
T
PVVIVDVQRSGLP
A
Q
G
D
I
M
Q
A
I
W
G
T
H
G
D
H
S
L
I
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L
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A
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D
F
T
I
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A
F
N
L
S
E
K
Y
R
T
-----
P
V
I
L
L
T
D
--
A
E
-----------
V
G
H
M
R
E
R
V
Y
I
P
N
P
D
E
I
E
I
I
N
R
---------------
L
I
K
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I
V
E
K
I
E
K
N
K
K
D
I
F
-
T
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Y
E
L
ED
A
V
A
T
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I
V
A
R
S
A
L
L
L
K
I
E
-----
T
I
W
P
F
D
F
E
L
I
E
R
I
A
---
E
R
V
D
K
L
Y
V
P
E
M
N
L
G
Q
L
Y
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E
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A
N
G
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A
E
V
K
L
I
S
K
I
G
G
E
V
H
T
P
M
-
E
I
F
E
F
I
---------------
20
Fugue
69.09
16%
-142
- C1 -
4Q0S
4
?
A:
[12-260]
---------------
S
A
R
T
S
I
T
R
R
E
Y
D
E
W
V
R
E
-----
A
A
A
L
G
K
A
L
R
Y
P
--------
I
T
E
--
K
M
V
N
D
S
A
G
I
V
F
G
---
A
D
Q
Y
D
A
F
---
K
NGM
W
S
----
G
E
----------------------------
P
Y
E
A
M
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I
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E
S
L
N
E
P
A
V
D
G
L
-
P
T
G
A
A
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Y
A
E
Y
S
-
G
L
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D
K
L
M
I
V
H
P
G
K
--
F
C
P
P
H
H
H
G
R
K
T
-----------------------------
E
S
Y
E
V
V
--------
L
G
E
M
E
V
F
Y
S
P
T
P
S
A
E
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G
V
E
L
L
N
F
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M
P
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G
S
--
P
W
P
E
G
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A
L
P
K
G
R
E
S
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Y
E
K
L
T
S
Y
V
R
L
R
A
-
G
D
P
K
F
V
M
H
---
R
K
H
L
H
A
F
R
C
P
P
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D
V
P
L
V
V
R
E
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Y
S
H
E
P
T
E
A
A
A
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N
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A
P
I
P
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W
L
G
M
H
D
N
D
F
VS
D
A
A
N
T
G
RL
Q
T
A
I
S
22
Fugue
65.74
12%
-149
- C1 -
4LVI
4
PRE_STRAG
A:
[1-194]
---------------
S
Y
M
V
A
R
M
Q
K
M
K
A
G
N
L
G
G
-----
A
F
K
H
N
E
R
V
S
N
K
D
--------------------------------------------------------------------------------------------------------
I
N
P
S
R
S
H
L
N
Y
E
L
T
D
R
D
R
S
--
V
S
Y
E
K
Q
I
K
D
Y
V
N
-----------
E
N
K
-
V
S
N
R
A
I
R
K
D
A
V
L
C
D
E
W
I
I
T
--------
S
D
K
D
F
F
E
K
L
D
E
E
Q
T
R
T
F
F
E
T
A
K
-
N
Y
F
A
E
N
Y
--
G
-----
E
S
N
I
A
Y
A
S
V
H
L
----
D
E
S
T
P
H
-
M
H
M
G
V
V
P
F
ENG
K
L
S
S
K
A
M
F
D
R
E
E
L
K
H
I
Q
E
D
L
P
R
Y
M
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D
H
G
F
E
L
E
R
G
K
L
N
S
E
A
K
H
K
T
V
A
E
F
K
R
A
---------------
16
Fugue
63.64
12%
-151
- C1 -
1QB7
3
?
A:
[1-236]
-------PFKEVSPN
S
F
L
L
D
D
S
H
A
L
S
Q
L
L
K
K
S
-----
Y
R
W
Y
S
P
V
F
S
P
R
N
V
P
R
F
A
D
V
S
S
I
--
T
E
S
P
E
T
L
K
A
I
R
D
--
F
L
V
Q
R
Y
R
A
---
M
---
S
P
----
A
P
T
H
I
L
-----
G
F
D
A
-------------
R
G
F
L
F
G
P
M
I
A
V
E
L
E
--------
I
P
F
V
L
M
R
K
A
D
K
N
A
G
--------------
L
L
I
R
S
E
P
Y
E
K
E
-----------
Y
K
E
-
A
A
P
E
V
M
T
I
R
-------
Y
G
S
--------
I
G
K
G
S
R
V
V
L
I
D
D
V
L
A
T
G
G
T
A
L
S
-
G
--
L
Q
L
V
--
E
A
S
D
A
V
V
V
E
M
V
S
I
L
S
I
P
F
L
K
-------------
A
A
E
---
K
I
H
S
T
A
N
S
R
Y
K
D
I
K
F
I
S
L
L
S
D
D
A
L
T
E
E
N
C
G
D
S
K
N
Y
T
G
P
R
V
L
S
-
C
G
D
V
L
A
E
H
PH-------------
18
Fugue
48.62
11%
-96
- C1 -
2KHV
-
?
A:
[1-106]
---------------------------------------------------------------------------
M
T
F
S
E
C
A
A
---
L
---
Y
I
----
K
A
H
R
S
S
WKNTK
H
A
D
Q
-------------
W
T
N
T
I
K
T
Y
C
G
P
V
I
G
P
L
S
V
Q
D
V
-
D
T
K
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I
M
K
V
L
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I
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E
Q
K
P
E
T
A
S
R
L
R
G
--
R
I
E
S
V
L
D
W
A
T
V
R
GYREGDNPARW
R
G
Y
L
E
H
H
H
H
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
48.59
11%
-112
- C1 -
2K73
-
DSBB_ECOLI
A:
[1-183]
---------------------------------------------------------------------------------------------------
M
L
R
-----
F
L
N
Q
-------------
A
S
Q
G
R
G
A
W
L
L
M
A
F
T
A
L
A
L
E
L
T
-
A
L
W
F
Q
H
V
M
L
L
K
P
C
V
L
S
I
Y
E
R
A
A
L
F
G
--
V
L
G
A
A
L
I
G
A
I
A
P
-----------
K
T
P
L
R
Y
V
A
M
V
I
W
L
Y
S
A
F
R
G
V
Q
L
T
--------
Y
E
H
T
M
L
Q
L
Y
P
S
P
F
A
T
S
----------
D
F
M
V
--
R
F
P
E
W
L
P
L
D
K
W
V
P
Q
V
F
V
A
S
G
D
C
A
E
R
Q
W
-
D
F
L
G
L
E
M
P
---
Q
W
L
L
G
I
F
I
A
Y
L
I
V
A
V
L
V
V
I
S
Q
P
F
K
A
K
K
R
D
L
F
G
R
G
H
H
H
H
H
H
--------------------------
5
PsiBlast_PDB
48.57
32%
-75
- C3 -
3UOG
-
?
A:
[47-132]
----------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
P
E
A
G
E
H
-
D
I
I
V
R
T
L
A
--
V
S
L
N
Y
R
D
K
L
V
L
E
-----------
T
G
M
G
L
D
L
A
F
P
F
V
P
A
S
D
M
S
G
V
V
E
A
--------
V
G
K
S
V
T
R
F
R
P
G
D
R
V
I
S
T
F
--
A
P
-
G
W
L
-
D
G
L
--
R
P
G
T
G
R
T
P
A
------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
43.49
37%
-81
- C3 -
4BYG
-
?
A:
[131-162]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
F
-
F
K
R
G
W
Q
S
L
---
K
T
G
Q
L
N
M
F
T
L
I
A
M
G
I
G
V
A
W
I
Y
---------------------------------------------
2
PsiBlast_PDB
43.27
37%
-82
- C3 -
4BEV
-
?
A:
[131-162]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
F
-
F
K
R
G
W
Q
S
L
---
K
T
G
Q
L
N
M
F
T
L
I
A
M
G
I
G
V
A
W
I
Y
---------------------------------------------
1
PsiBlast_PDB
42.48
37%
-77
- C3 -
3RFU
-
?
A:
[131-162]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
F
-
F
K
R
G
W
Q
S
L
---
K
T
G
Q
L
N
M
F
T
L
I
A
M
G
I
G
V
A
W
I
Y
---------------------------------------------
4
PsiBlast_PDB
42.19
37%
-68
- C3 -
4BBJ
1
?
A:
[131-160]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
F
-
F
K
R
G
W
Q
S
L
---
K
T
G
Q
L
N
M
F
T
L
I
A
M
G
I
G
V
A
W
I
Y
---------------------------------------------
8
HHSearch
39.40
14%
-82
- C3 -
2QJY
-
CYB_RHOSH
A:
[83-170]
-----------------------------------------------------------------------------------------------------------------------------------------------------
I
M
R
N
V
N
G
G
F
M
L
R
Y
L
H
A
N
G
A
S
L
F
F
I
A
V
Y
L
H
I
F
-
R
G
L
Y
-----------
Y
G
S
Y
K
A
P
R
E
V
T
W
I
V
G
M
L
I
Y
L
A
M
M
A
T
A
F
M
G
Y
V
L
P
W
G
Q
M
S
F
W
G
A
T
V
I
T
G
L
F
G
A
I
P
-------------------------------------------------------------------------------------------------------------------
14
HHSearch
38.22
45%
116
- C3 -
1JSD
-
?
A:
[54-73]
----------------------------------------------------
T
C
T
I
E
G
L
--
I
Y
G
N
P
S
C
D
L
L
L
G
--
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
31.46
38%
-7
* C2 *
4UBS
4
CYP28_STRAW
A:
[363-393]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
G
L
R
L
A
--------
A
P
A
D
E
I
P
F
K
P
G
D
T
I
Q
G
M
L
E
L
P
V
-
T
W
----------------------------------------------------------------------------------------------------------------
7
HHSearch
30.75
20%
136
- C3 -
3UYX
1
?
A:
[7-26]
----------------------------------------------------
K
C
N
I
A
G
W
--
I
L
G
N
P
E
C
E
S
L
S
T
--
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
22.80
10%
114
* C3 *
1JB0
-
PSAI_THEEB
I:
[18-37]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
C
W
L
M
P
T
V
V
M
G
L
L
F
L
Y
I
E
G
E
-----------------------------------------------------------------------------------
24
Fugue
21.05
24%
17
* C1 *
2KV5
-
?
A:
[1-33]
------------------------------------------------------------------------------------------------------------------------------------------------
M
-
K
D
L
M
S
L
V
I
A
P
I
F
V
G
L
V
L
E
M
I
S
R
V
L
D
--
E
E
D
D
S
R
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
19.01
26%
327
- C2 -
3UL0
-
NCBP1_MOUSE
C:
[3-25]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
R
R
R
H
S
D
E
N
D
G
G
Q
P
H
K
R
R
K
T
S
D
--------------------
10
HHSearch
15.06
0%
331
- C3 -
3C02
3
?
A:
[190-203]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
A
L
N
P
S
R
D
L
G
S
R
F
L
----------------------------------------------------------------------------------------
12
HHSearch
14.37
25%
340
- C3 -
3DL8
-
SECG_AQUAE
E:
[60-72]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
F
L
V
L
A
L
L
L
S
V
I
--------------------------------------------