@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0104: (2016-03-12 )
VTIKITRKTGIGSGITPVKIRIENEEIVKLDNHQSHFFMPKMEKTKVCVTDWFYGSQEAVLENSNDVVVRINRKALLLNYSMFPFLFYGFVMTSLFATLIALGLCLVSFFYSRKHWFEFVKIK
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------.........10..--..-..----------.---.-20......-------.-------.-------.30-........40----....------....50....--....60.---.......-70.--.----......80--------...---.....---90........100..---.----.---...110-.-.....------..120.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------
V
T
I
K
I
T
R
KTGIGS--G
I
-
T
P
----------
V
---
K
-
I
-
R
IEN
E
E
-------
I
-------
V
-------
K
LD-NHQSHFFMPK----MEK
T
------
K
V
C
V
T
D
WFYG--S
Q
E
A
VLE---NSN
D
V
V
V
-
R
IN--
R
----
K
A
L
L
LNY
S
--------
M
F
P
---
F
L
F
Y
G
---
F
V
M
T
S
L
F
A
T
L
I
A
L
G
L
---
C
----
L
---
V
S
F
F
Y
--
S
-
R
K
H
W
F
------
E
F
V
KIK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
80.77
20%
-117
- C6 -
4QGL
3
MTND_BACAN
A:
[1-174]
--------------------------------------------------------------------------------------------------------------GAAA
M
A
Q
I
R
I
H
E
V
N
T
R
I
E
N
E
V
K
V
S
K
--
F
L
-
Q
E
----------
E
---
G
-
V
-
L
Y
E
K
W
N
-------
I
-------
S
-------
K
L
P
-
P
H
L
N
E
N
Y
S
L
T
----
D
E
N
K
------
A
E
I
L
A
V
F
S
K
E
--
I
A
D
V
S
A
R
R
GY
K
A
H
D
V
I
S
-
L
S
N
--
S
TPN
L
D
E
L
L
I
N
F
Q
K
E
H
H
H
T
D
D
E
V
R
---
F
I
V
S
G
H
G
I
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A
I
E
G
K
D
G
T
F
F
D
V
E
L
E
PG
D
----
L
---
I
S
V
P
E
--
N
-
A
R
H
Y
F
T
L
Q
DDR
Q
V
V
A
I
R
I
F
VTTEGWVPIY-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
71.08
21%
-81
- C9 -
3J09
-
COPA_ARCFU
A:
[35-145]
---------------------------------------------------------------------------------------------------------------------------------
E
T
A
V
G
S
LE
G
V
-
E
E
----------
V
---
R
-
V
-
N
L
A
T
E
T
A
------
F
-------
I
-------
R
F
D
-
E
K
R
I
D
F
---------
E
T
I
------
K
R
V
I
E
D
L
G
Y
G
V
V
D
E
Q
A
A
V
S
---
A
E
V
E
H
L
S
-
R
M
K
--
R
----
K
L
Y
V
A
A
F
A
--------
G
V
L
---
L
L
F
L
A
---
H
F
I
S
L
P
Y
E
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Q
L
L
I
---
A
----
L
---
P
A
I
F
Y
--
S
-
G
S
S
I
F
------
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
70.39
17%
-71
- C10 -
2W4Y
4
?
A:
[1-122]
-----------------------------------------------------------------------------------------------------------------------ALG
D
T
L
T
I
T
L
G
---
G
S
--
G
G
-
T
A
----------
K
---
V
-
L
-
R
K
I
N
Q
--------------------------
D
-
G
Y
T
S
E
Y
Y
L
P
E
TS
S
S
F
R
A
K
------
V
R
H
T
K
E
S
V
K
P
--
N
Q
V
Q
Y
E
R
---
H
N
V
E
F
T
E
-
T
V
Y
--
A
----
S
G
S
T
P
E
F
V
--------
R
Q
A
---
Y
V
V
I
R
---
H
K
V
G
D
V
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A
T
V
S
D
L
G
E
---
A
----
L
----
S
F
Y
L
--
N
-
E
A
L
Y
G
------
K
L
I
G
W
E
S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
66.69
19%
-71
- C4 -
5A1F
14
KDM5B_HUMAN
A:
[1-458]
SM
F
L
P
P
P
E
C
P
V
F
E
P
S
WEEFAD
P
F
A
F
I
H
K
I
R
P
I
A
E
Q
T
G
I
C
K
V
R
P
PPDWQP
P
F
A
C
D
VDK
L
H
F
T
P
R
I
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R
L
N
E
L
E
A
Q
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R
VRDYT
L
R
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F
G
E
M
A
D
A
F
K
S
D
Y
F
NMPVHMVP
T
E
L
V
E
K
E
F
W
R
L
V
S
TIEED
V
T
V
E
Y
G
A
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I
A
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E
--
F
G
-
S
G
----------
F
---
P
-
V
-
R
D
S
P
E
E
-------
E
-------
E
-------
Y
L
D
-
S
G
W
N
L
N
N
M
P
V
----
M
E
Q
S
----------------------
V
L
A
---
H
I
T
A
D
I
C
-
G
M
K
------------------------
L
P
---
W
L
Y
V
G
---
M
C
F
S
S
F
C
W
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I
E
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H
W
S
---
Y
----
S
---
I
N
Y
L
H
W
G
E
-
P
K
T
W
Y
------
G
V
P
G
Y
A
A
E
Q
L
E
N
V
M
K
K
L
APELFVSQPDLL
H
Q
L
V
T
I
M
N
P
N
T
L
M
T
H
EV
P
V
Y
R
T
N
Q
C
AG
E
F
V
I
T
F
P
R
A
Y
H
S
G
F
N
Q
G
F
N
F
A
E
A
V
N
F
C
T
VDW
L
P
L
G
R
Q
C
V
E
H
Y
R
L
L
HRYCVFS
H
D
E
M
I
C
K
M
A
S
K
ADVLD
V
V
V
A
S
T
V
Q
K
D
M
A
I
M
I
E
D
E
K
A
L
R
E
T
V
R
K
L
GVI
D
S
E
R
M
DFELLPDDERQCVKCKTTCFM
S
A
I
S
C
SCKPG
L
L
V
C
LHHVKELCSCPPYKYKLRYRYT
L
D
D
L
Y
P
M
M
N
A
L
K
L
R
A
E
31
Fugue
65.13
13%
-101
* C11 *
2YZJ
6
?
A:
[12-169]
--------------------------------------------------------------------------------------------------------------------------
I
L
S
H
Q
S
I
K
N
L
L
G
K
--
V
I
-
L
N
YSEENVREN
G
Y
---
D
-
L
-
R
I
C
G
D
K
-------
Y
-------
Y
-------
E
L
V
-
Q
G
A
E
L
P
E
K
K
A
----
T
L
R
E
------
I
E
F
K
E
R
A
I
L
S
--
A
N
H
T
Y
L
F
---
E
S
C
E
E
F
N
M
P
A
D
--
L
----
A
V
L
I
T
L
K
S
--------
T
L
A
R
N
G
F
L
A
P
P
---
T
V
I
D
A
G
Y
K
G
K
V
N
V
A
I
---
T
----
A
VYN
S
S
L
K
K
--
G
M
A
T
H
H
L
------
I
F
L
K
L
D
KPTERLYNGKYQGGILI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
53.61
10%
-91
- C11 -
1N3J
-
?
A:
[1-119]
-----------------------------------------------------------------------------------------------------------------------MFN
D
R
V
I
V
K
K
S
P
L
G
G
Y
--
G
V
-
F
A
----------
R
---
K
-
S
-
F
E
K
G
E
L
-------
V
-------
E
-------
E
----
C
L
C
I
V
R
H
N
D
----
D
W
G
T
------
A
L
------------
E
D
Y
L
F
---
S
R
K
N
M
S
A
-
M
A
L
--
G
----
F
G
A
I
F
N
H
S
--------
K
D
P
---
N
A
R
H
E
---
L
T
A
G
L
K
R
M
R
I
F
T
I
K
P
---
I
AI
G
E
E
---
I
T
I
S
Y
--
G
-
D
D
Y
W
L
------
S
R
P
R
L
T
QN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
50.65
16%
10
- C7 -
3CBN
-
?
A:
[43-121]
---------------------------------------------------------------------------------------------------------------------------
T
F
E
V
T
V
D
P
E
I
G
E
--
T
A
D
C
I
----------
I
---
G
-
V
-
S
S
S
D
S
I
STLP
D
E
M
K
-------
R
-------
A
I
A
-
R
E
S
L
V
R
V
I
L
R
----
T
E
N
G
------
Y
D
E
I
R
G
Y
--
G
--
H
P
E
L
T
L
D
---
H
P
T
D
I
V
C
-
R
K
S
--
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
49.82
26%
-66
- C9 -
3LPO
-
SUIS_HUMAN
A:
[634-697]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
--
H
Q
D
P
A
F
F
---
G
Q
N
S
L
L
V
-
K
S
S
--
R
----
Q
Y
L
T
I
R
Y
T
--------
L
L
P
---
F
L
Y
T
L
---
F
Y
K
A
H
V
F
G
E
T
V
A
R
P
V
--------
L
---
H
E
F
Y
E
--
D
-
T
N
S
W
I
------
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
49.62
26%
-72
- C9 -
3LPP
-
SUIS_HUMAN
A:
[634-697]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
--
H
Q
D
P
A
F
F
---
G
Q
N
S
L
L
V
-
K
S
S
--
R
----
Q
Y
L
T
I
R
Y
T
--------
L
L
P
---
F
L
Y
T
L
---
F
Y
K
A
H
V
F
G
E
T
V
A
R
P
V
--------
L
---
H
E
F
Y
E
--
D
-
T
N
S
W
I
------
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
48.10
33%
24
- C5 -
2B39
-
CO3_BOVIN
A:
[30-95]
--------------------------------------------------------------------------------------------------------------------------------------------
T
P
----------
N
---
I
-
L
-
R
L
E
S
E
E
-------
T
-------
V
-------
V
L
E
-
A
H
G
G
Q
----------
G
T
I
------
Q
V
S
V
T
V
H
D
F
P
--
A
K
K
Q
V
L
S
---
N
E
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
46.84
13%
-35
- C8 -
1F32
-
API3_ASCSU
A:
[72-125]
----------------------------------------------------------------------------------------------------------------------------------
K
M
F
N
F
--
V
G
-
C
S
----------
V
L
GN
K
-
L
-
F
I
D
Q
K
Y
-------
V
-------
R
-------
D
L
T
-
A
K
D
H
A
E
V
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
44.58
9%
-26
- C10 -
2PFU
-
EXBD_ECOLI
A:
[43-141]
----------------------------------------------------------------------------------------------------------------------M
D
V
K
V
N
L
P
A
S
T
S
T
P
Q
P
R
--
P
E
-
K
P
----------
V
---
Y
-
L
-
S
V
K
A
D
N
-------
S
-------
M
-------
F
I
G
-
N
D
P
V
T
--
D
E
T
----
M
I
T
A
------
L
N
A
L
T
E
G
K
K
D
--
T
T
I
F
F
R
A
---
D
K
T
V
D
Y
E
-
T
L
M
--
K
----
V
M
D
T
L
H
Q
A
-----------------------------------
G
Y
---
L
----
K
---
I
G
L
V
G
--
E
-
E
T
A
K
A
------
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
40.88
15%
11
* C10 *
3BY7
-
?
A:
[2-86]
--------------------------------------------------------------------------------------------------------------------------------------------
K
N
----------
I
---
K
-
I
M
R
L
V
T
G
E
D
I
-----
I
-------
G
-------
N
I
S
-
E
S
Q
G
L
I
T
I
K
K
----
A
F
V
I
I
P
M
QP
V
Q
L
V
L
S
P
W
Q
P
Y
--
T
D
D
K
E
I
V
---
I
D
D
S
K
V
I
-
T
I
T
S
P
K
----
D
D
I
I
K
S
Y
E
--------
S
H
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
39.02
0%
22
- C7 -
1U0T
-
NADK_MYCTU
A:
[252-275]
--------------------------------------------------------------------------------------------------------------------------------------------------------
A
---
L
-
V
-
F
C
D
G
R
R
-------
E
-------
M
-------
L
I
P
-
A
G
S
R
L
E
V
T
R
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
38.59
19%
105
* C7 *
3IDU
-
?
A:
[42-63]
--------------------------------------------------------------------------------------------------------------------------------
K
N
L
G
G
I
G
V-
P
S
-
T
K
----------
V
---
R
-
V
-
Y
I
N
G
T
L
-------
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
38.04
17%
-11
- C8 -
1WGK
-
URM1_MOUSE
A:
[73-103]
---------------------------------------------------------------------------------------------------------------------------------------------
G
----------
I
---
L
-
V
-
L
I
N
D
A
D
-------
W
-------
E
LLGELD
Y
Q
L
Q
-
D
Q
D
S
I
L
F
I
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
38.03
9%
-26
- C8 -
2K9X
-
?
A:
[68-97]
--------------------------------------------------------------------------------------------------------------------------------------------------------
I
---
L
-
V
-
L
V
N
S
C
D
-------
A
EVVGGMD
Y
-------
V
L
N
-
D
G
D
T
V
E
F
I
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
37.85
13%
34
* C8 *
3UV0
-
?
A:
[56-81]
-----------------------------------------------------------------------------------------------------------------------------------------
L
A
-
A
L
----------
V
---
G
K
I
-
F
V
N
D
Q
E
-------
E
-------
T
V
V
-----
D
I
G
-
M
E
N
A
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
37.38
5%
31
* C9 *
3HZ7
1
?
A:
[7-45]
-------------------------------------------------------------------------------------------------------------------------------------
L
G
--
Q
V
-
C
P
----------
I
---
P
-
V
-
I
R
A
K
K
A
-------
L
-------
A
-------
E
L
G
E
A
G
G
V
V
T
V
L
V
D
----
N
D
I
S
------
R
Q
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
36.16
11%
8
- C8 -
2L0D
-
?
A:
[36-67]
-----------------------------------------------------------------------------------------------------------------------------------------
T
S
-
F
N
----------
V
---
S
-
L
-
L
V
D
G
I
V
-------
V
-------
D
T
Q
T
V
T--
S
L
E
-
S
E
N
S
T
N
V
D
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------