@TOME V2.3
(Nov 2016)

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3D Common Core:

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Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : Lmo0106: (2016-03-12 )
MYFVYDIGGTFVKFALMENNGTVKMKDKFPTTAKSAEELVAQMVEKWRPYRTEVKGIAVSCPGVVDTEKGVIYQGGSLLFMHEKNLAEMLARECHVPVVLQNDAKSAALAELWLGVAKNVHSAAILTLGSGVGGGIIMDGKLQSGYHLMAGEVSFMETSFDTKKLRGTFFGRTGSAVELIKRIASKKNLPNKKDGEHVFELINQGDEEANAIFDAYIYELASQILNIQYLIDPEIIAIGGGISAQPVVVERLNDAVAEIKAANPYHAAQPKIVTCHFQNDANLYGALYNFFLQMDAQNKR

Atome Classification :

(20 SA) ---------------------------------------------------------------------------.........10........20-........-30..-..-.----.---..40..----.----...-.-------.50------.-------.---...-...60........70....----....80..-.-....--..90........100.......110....-------------...120.......130.......140.......150.......---160-----.-.-------------.....-..-170----.....-...180---....------------.---------.--------..-------------190-------------...-.---.....200.---------...-...210.......220.......230.......240.-.--.....250.......260---......----...270.-......280...------....290.......300---
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) ---------------------------------------------------------------------------MYFVYDIGGTFVKFALMENNG-TVKMKDKF-PTTA-KS-A----E---ELVAQM----V----EKW-R-------PYR------T-------E---VKG-IAVSCPGVVDTEKGVIYQG----GSLLF-MH-E-KNLA--EMLARECHVPVVLQNDAKSAALAELWLGV-------------AKNVHSAAILTLGSGVGGGIIMDGKLQSGYHLMAGEVSFMETS---F-------D-T-------------KKLRG-TF-FG-----RTGSA-VELIK----RIAS------------K---------K--------NL-------------P---------------NKK-D---GEHVFELIN---------QGD-EEANAIFDAYIYELASQILNIQYLIDPEIIAIGGGIS-A--QPVVVERLNDAVAEIK-----AANPYH----AAQPKIV-TCHFQNDANLYG------ALYNFFLQMDAQNKR-----
30 HHSearch 92.7331%-107 - C1 -2GUP ? A:[5-290] ---------------------------------------------------------------------------TIATIDIGGTGIKFASLTPDG-KILDKTSI-STPE--N-L----E---DLLAWL----D----QRL-S-------E--------Q-------D---YSG-IAMSVPGAVNQETGVIDGF----SAVPY-IH-G-FSWY--EALS-SYQLPVHLENDANCVGLSELLAHP---------------ELENAACVVIGTGIGGAMIINGRLHRGRHGLGGEFGYMTTL---A-------P----------------AEKL-NN-WS-----QLAST-GNMVR----YVIE------------K---------S--------GH-----------------------------TDW-D---GRKIYQEAA---------AGN-ILCQEAIERMNRNLAQGLLNIQYLIDPGVISLGGSIS-Q--NPDFIQGVKKAVEDFV-----DAYEEY----TVAPVIQ-ACTYHADANLYG------ALVNWLQEEK----------
1 PsiBlast_PDB 91.3233% -93 - C1 -2GUP ? A:[10-291] --------------------------------------------------------------------------------DIGGTGIKFASLTPDG-KILDKTSI--STP-EN-L----E---DLLAWL----D----Q---R-------LSE------Q-------D---YSG-IAMSVPGAVNQETGVIDGF----SAVPY-IH-G-FSWY--EALSS-YQLPVHLENDANCVGLSELL--A-------------HPELENAACVVIGTGIGGAMIINGRLHRGRHGLGGEFGYMTTL---A-------P-A-------------EKLNNWSQ-LA-----STGNM-V--------RYVI------------E---------K--------SG-------------H---------------TDW-D---GRKIYQEAA---------AGN-ILCQEAIERMNRNLAQGLLNIQYLIDPGVISLGGSIS-Q--NPDFIQGVKKAVEDFV-----DAYEEY----TVAPVIQ-ACTYHADANLYG------ALVN-WLQEEKQ--------
6 PsiBlast_PDB 89.6127%-104 - C1 -2AP1 NAGK_SALTY A:[25-322] ---------------------------------------------------------------------------MYYGFDIGGTKIALGVFDSTR-RLQWEKRV-PTPH-TS-Y----SAFLDAVCEL----V----EE--A-------DQR------F-------G---VKGSVGIGIPGMPETEDGTLY-A----ANVPA-AS-G-KPLR--ADLSARLDRDVRLDNDANCFALSEAWDDE-------------FTQYPLVMGLILGTGVGGGLVLNGKPITGQSYITGEFGHMRLP---V-------D-A-------------LTLMG-FD-FPLR---RCGCGQMGCIE----NYLS------------G---------R--------GF-------------AWLYQHYYD-------QSL-Q---APEIIALWE---------QGD-EQAHAHVERYLDLLAVCLGNILTIVDPDLLVIGGGLS-N--FTAITTQLAERL------------PRHLLPVARAPRIE-RARHGDAGGMRG------AAF-----------------
24 HHSearch 88.8927%-103 - C1 -2QM1 ? A:[7-324] ---------------------------------------------------------------------------KIIGIDLGGTTIKFAILTTDG-VVQQKWSI-ETNI-LEDGKHIVP---SIIESI----R----HRI-D-------LYNM-----KKE-----D---FVG-IGMGTPGSVDIEKGTVVGA-----YNLN-WT-TVQPVK--EQIESALGIPFALDNDANVAALGERWKGA-------------GENNPDVIFITLGTGVGGGIVAAGKLLHGVAGCAGEVGHVTVD---P-------N-GFDC----------TCGKR-GC-LE-----TVSSA-TGVVR----VARH------------L---------S--------EEFAGDSELKQAIDDG---------------QDV-S---SKDVFEFAE---------KGD-HFALMVVDRVCFYLGLATGNLGNTLNPDSVVIGGGVS-AA-GEFLRSRVEKYFQEFT-----FPQ--V----RNSTKIK-LAELGNEAGVIG------AASLALQFSK----------
2 PsiBlast_PDB 86.5429% -99 - C1 -4HTL BGLK_LISMO A:[9-290] -------------------------------------------------------------------------------FDIGGTALKMGVVLPHG-EIILTKSA-EISG-SD-G----D---QILAEM---------KVF-L-------AEN------T-------D---VTG-IAVSAPGYVNPKTGLITMG----GAIRR-FD-N-FNLK--EWLEAETGLPVAIENDANCALLAEKWLGK-------------GQDLDDFLCLTIGTGIGGGIFSNGELVRGGRFRAGEFGYMFSE---R-------P-G-------------AFRPG-KYTLN-----ETTTM-LVLRR----QYAE------------L---------T--------GR-------------P---------------LEEIT---GEEIFANYD---------AHD-AVSERLITEFYTGICTGLYNLIYLFDPTHIFIGGGIT-S--RPTF-------IAELK-----HHMESF----GLRDTIIETATHKNQAGLLG------AVYHFL--------------
4 PsiBlast_PDB 85.8325%-102 - C1 -4DB3 NAGK_VIBVU A:[25-322] ---------------------------------------------------------------------------MYYGFDVGGTKIEFGAFNEKL-ERVATERV-PTPT-DD-Y----PLLLETIAGL----V----AKYDQ-------EFA------C-------E---GK--IGLGLPGMEDADDATVLTV-----NVPA-AK-G-KPLR--ADLEAKIGRSVKIENDANCFALSEAWDEE-------------LQDAPSVMGLILGTGFGGGLIYEGKVFSGRNNVAGELGHMRLP---LDAWFHLGD-N-------------APLLG-CG-CG-----KKGCL-DSYLSGRGFELLY------------A---------H--------YY-------------G---------------EEK-K---AIDIIKANA---------AGD-EKAAEHVERFMELLAICFGNIFTANDPHVVALGGGLS-N--FELIYEEMPKRVPKYL-----LS---V----AKCPKII-KAKHGDSGGVRG------AAF-----------------
29 HHSearch 85.3224%-101 - C1 -2AP1 NAGK_SALTY A:[25-326] ---------------------------------------------------------------------------MYYGFDIGGTKIALGVFDSTR-RLQWEKRV-PTPH-TS-Y----S---AFLDAV----C----ELV-E-------EAD------QRFG----V---KGS-VGIGIPGMPETEDGTLYA-----ANVPA-AS-G-KPLR--ADLSARLDRDVRLDNDANCFALSEAWDDE-------------FTQYPLVMGLILGTGVGGGLVLNGKPITGQSYITGEFGHMRLP---V-------D-ALTLMGFDFPLRRCGCGQM-GC-IE-----NYLSG-RGFAW----LYQH------------Y---------Y--------D------------------------------QSL-Q---APEIIALWE---------QGD-EQAHAHVERYLDLLAVCLGNILTIVDPDLLVIGGGLS-N--FTAITTQLAERLPRHL-----LP---V----ARAPRIE-RARHGDAGGMRG------AAFLHLT-------------
22 HHSearch 85.2022%-102 - C1 -3VOV ? A:[2-300] ---------------------------------------------------------------------------KVVGLDLGGTKIAAGVFDG-K-RLLSKVVV-PTPK-EG-G----E---RVAEAL----A----EAA-E-------RAE------REAGV---R---GEA-IGLGTPGPLDFRRGVIR-------NIPG-VQ-D-FPIR--RILEEATGRPVFLENDANAAALAEHHLGA-------------AQGEESSLYLTVSTGIGGGVVLGGRVLRGERGQGGELGHLTLL---P-------G-GPAC----------GCGLE-GC-LE-----ALAAG-RALER----DATY------------A---------F--------Q------------------------------RPV-D---TRELFRLFQ---------AGD-PKAERLVLQAARYVGIGLASLVKAFDPGVVVLGGGVA-LNAPEGYWEALLEAYRRYL-----QG--------WEAPPLR-RARLGAEAGLLG------AALTAYLEVKDG--------
47 Fugue 83.4921%-109 - C1 -1Z05 ? A:[34-429] DHIKQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHETTVQEAISRGRPAVGLQTNNLGWQFLSMRLGRGYLTIALHELGG-EVLIDTKI-DIHE-ID-Q----D---DVLARL----L----FEI-E-------EFF------QTYAAQLDR---VTS-IAITLPGLVNSEQGIVLQM----PHYNV--K-N-LALG--PEIYKATGLPVFVANDTRAWALAEKLFGH-------------SQDVDNSVLISIHHGLGAGIVLDGRVLQGRHGNIGELGHIQID---P-------Q-G-------------KRCHC-GN-YGCLE--TVASS-QAIRD----QVTA------------R---------IQAGEPSCLAT-------------V---------------EEI-S---IEDICAAAA---------DGD-PLAVDVIQQLGRYLGAAIAIVINLFNPEKILIGGVINQA--KSILYPSIEQCIREQ-------SLPVY----HQDLKLV-ESRFYKQATMPG------AALIKQALYDGLLLMKVVEG
5 PsiBlast_PDB 81.2623%-103 - C1 -1Z05 ? A:[110-424] ----------------------------------------------------------------------------FLSMRLGRGYLTIALHELGG-EVLIDTKI-DIHE-ID-Q----D---DVLARL----LFEIEEFF-Q-------TYA------A-------QLDRVTS-IAITLPGLVNSEQGIVLQ-------MPH-YN-V-KNLALGPEIYKATGLPVFVANDTRAWALAEKLFGH-------------SQDVDNSVLISIHHGLGAGIVLDGRVLQGRHGNIGELGHIQID---P-------Q-G-------------KRCHC-GN-YGCL---ETVAS-SQAIR----DQVT------------A---------R--------IQ-------------A---------------GEP-S---CLATVEEISIEDICAAAADGD-PLAVDVIQQLGRYLGAAIAIVINLFNPEKILIGGVINQA--KSILYPSIEQCIRE-------QSLPVY----HQDLKLV-ESRFYKQATMPGAALIKQALYDGLLLM-----------
27 HHSearch 79.8421%-106 - C1 -1Z05 ? A:[109-417] ---------------------------------------------------------------------------QFLSMRLGRGYLTIALHELGG-EVLIDTKI-DIHE-ID-Q----D---DVLARLLFEIE----EFF-Q-------TYAAQ----LD------R---VTS-IAITLPGLVNSEQGIVLQM-----PHYN-VK-N-LALG--PEIYKATGLPVFVANDTRAWALAEKLFGH-------------SQDVDNSVLISIHHGLGAGIVLDGRVLQGRHGNIGELGHIQID---P-------Q-GKRC----------HCGNY-GC-LE-----TVASS-QAIRD----QVTA------------R---------I--------QA-------------GEPSCLATV-------EEI-S---IEDICAAAA---------DGD-PLAVDVIQQLGRYLGAAIAIVINLFNPEKILIGGVIN-QA-KSILYPSIEQCIREQS-----LPV--Y----HQDLKLV-ESRFYKQATMPG------AALIKQAL------------
23 HHSearch 79.6022% -93 - C1 -3VGL ? A:[3-313] ---------------------------------------------------------------------------LTIGVDIGGTKIAAGVVDEEG-RILSTFKV-ATPP--T-A----E---GIVDAI----C----AAV-A-------GAS------EGH-----D---VEA-VGIGAAGYVDDKRATVLFA-----PNID-WR-H-EPLK--DKVEQRVGLPVVVENDANAAAWGEYRFGA-------------GQGHDDVICITLGTGLGGGIIIGNKLRRGRFGVAAEFGHIRVV---P-------D-GLLC----------GCGSQ-GC-WE-----QYASG-RALVR----YAKQ------------R---------A--------NA-------------TPENAAVLLGLGDGSVDGI-E---GKHISEAAR---------QGD-PVAVDSFRELARWAGAGLADLASLFDPSAFIVGGGVS-DE-GELVLDPIRKSFRRWL-----IGG-EW----RPHAQVL-AAQLGGKAGLVG------AADLARQG------------
3 PsiBlast_PDB 78.5430% -98 - C1 -2QM1 ? A:[12-274] --------------------------------------------------------------------------------DLGGTTIKFAILTTDG-VVQQKWSI-ETNILED-G----K---HIVPSI----I----ESI-RHRIDLYNMKK------E-------D---FVG-IGMGTPGSVDIEKGTVVGA----YNLNW-TT-V-QPVK--EQIESALGIPFALDNDANVAALGERWKGA-------------GENNPDVIFITLGTGVGGGIVAAGKLLHGVAGCAGEVGHVTVDPNGF-------DCT-------------CGKRG-CL--------ETVSS-ATGVV----RVARHLSEEFAGDSELK---------Q--------AI-------------D---------------DGQ-DVS-SKDVFEFAE---------KGD-HFALMVVDRVCFYLGLATGNLGNTLNPDSVVIGGGVS-A-------------------------------------------------------------------------------
32 HHSearch 77.9821%-103 * C1 *2HOE ? A:[88-375] ---------------------------------------------------------------------------YVLGIEVTRDEIAACLIDASM-NILAHEAH-PLPS-QSDR----E---ETLNVM----Y----RII-D-------RAKDMMEK-LGS-----K---LSA-LTVAAPGPIDTERGIIIDP-----RNFP-LS-Q-IPLA--NLLKEKYGIEVWVENDADMGAVGEKWYTK---------------RDDSFAWILTGKGIGAGIIIDGELYRGENGYAGEIGYTRVF---N-------G-----------------NEY-VF-LE-----DVCNE-NVVLK----HVLS------------M-----------------------------------------------------G---FS-LAEARD---------SGD-VRVKEYFDDIARYFSIGLLNLIHLFGISKIVIGGFFK-EL-GENFLKKIKIEVETHL-----LY--------KHSVDMS-FSKVQEPVIAFG------AAVHALENYLE---------
21 HHSearch 76.0022% -88 - C1 -2AA4 NANK_ECOLI A:[2-289] ---------------------------------------------------------------------------TTLAIDIGGTKLAAALIGADG-QIRDRREL-PTPA-SQ-TP---E---ALRDAL----S----ALV-S-------PLQ------A-------H---AQR-VAIASTGIIRDGSLLALNP----HNLGG-LL-H-FPLV--KTLEQLTNLPTIAINDAQAAAWAEFQALD--------------GDITDMVFITVSTGVGGGVVSGCKLLTGPGGLAGHIGHTLAD---P-------H-GPVC----------GCGRT-GC-VE-----AIASG-RGIAA----AAQG------------E---------L--------A-------------------------------GA-D---AKTIFTRAG---------QGD-EQAQQLIHRSARTLARLIADIKATTDCQCVVVGGSVG-L--AEGYLALVETYLAQEP-----A---------AFHVDLL-AAHYRHDAGLLG------AALLAQGE------------
25 HHSearch 74.8618% -97 - C1 -1Z6R MLC_ECOLI A:[86-394] ---------------------------------------------------------------------------HYLSLRISRGEIFLALRDLSS-KLVVEESQ-ELAL-KD-D----L---PLLDRI----I----SHI-D-------QFFIRHQKKLE------R---LTS-IAITLPGIIDTENGIVHRM----PFYED-VK-E-MPLG--EALEQHTGVPVYIQHDISAWTMAEALFGA-------------SRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD---P-------Y-GKRC----------YCGNH-GC-LE-----TIASV-DSILE----LAQL------------R---------L--------NQSMSSMLH------G---------------QPL-T---VDSLCQAAL---------RGD-LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLS-KA-ADILFPVISDSIRQQA-----LPA--Y----SQHISVE-STQFSNQGTMAG------AA-LVKDAM-----------
16 PsiBlast_PDB 71.2024% -93 - C1 -2YHY A:[33-297] -----------------------------------------------------------------------------LAVDLGGTNLRVAIVSMKGEIVKKYTQFNPKTY-EE-R----I---NLILQM----CVEAAAEA-V-------KLN------C-------R---ILG-VGISTGGRVNPREGIVLHS----TKLIQEWN-S-VDLR--TPLSDTLHLPVWVDNDGNCAALAERKFGQ-------------GKGLENFVTLITGTGIGGGIIHQHELIHGSSFCAAELGHLVVS---L-------D-G-------------PDCSC-GS-HGCIEAYASGMA----LQ----REAK------------KLHDEDLLLVE--------GM-------------S--------------------AVGALHLIQAAK---------LGN-AKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLA-S--H----------------------------------------------------------------------------
17 PsiBlast_PDB 71.1424% -93 - C1 -2YI1 A:[33-297] -----------------------------------------------------------------------------LAVDLGGTNLRVAIVSMKGEIVKKYTQFNPKTY-EE-R----I---NLILQM----CVEAAAEA-V-------KLN------C-------R---ILG-VGISTGGRVNPREGIVLHS----TKLIQEWN-S-VDLR--TPLSDTLHLPVWVDNDGNCAALAERKFGQ-------------GKGLENFVTLITGTGIGGGIIHQHELIHGSSFCAAELGHLVVS---L-------D-G-------------PDCSC-GS-HGCIEAYASGMA----LQ----REAK------------KLHDEDLLLVE--------GM-------------S--------------------AVGALHLIQAAK---------LGN-AKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLA-S--H----------------------------------------------------------------------------
33 HHSearch 70.2420% -99 - C1 -3MCP ? A:[10-325] ---------------------------------------------------------------------------IVMTLDAGGTNFVFSAIQGGK-EIADPVVL-PACA-DC-L----D---KCLGNL----V----EGF-K-------AIQAGLP--E-------A---PVA-ISFAFPGPADYQAGIIGDL----PNFPS-FRGG-VALG--PFLEDIFGIPVFINNDGSLFAYGEALTGVLPEINRRLREAGSTKRYKNLLGVTLGTGFGAGVVIDGELLRGDNAAGGYVWCLRNK---K------------------------Y-PE-YI-VE-----ESVSI-RAVMR----VYAE------------R---------S--------GD-------------A---------------GAR-T---PKEIFEIAEGIR------PGNREAAIAAFEELGEMAGDALASAITLID-GLIVIGGGLS-GA-SKYILPVLLKEMNAQT-----GMM-----------QKE-VYDLDEEKSFAG------FARGEAVEVLVP--------
46 Fugue 69.2121% -79 - C1 -1XC3 SCRK_BACSU A:[3-297] --------------------------------------------------------------------------AMLGGIEAGGTKFVCAVGREDG-TIIDRIEF-PT---KM-P----D---ETIEKV----I----QYF-S-------QF---------------S---LQA-IGIGSFGPVDNDKTSQTYGTITATPKAG-WR-H-YPFL--QTVKNEMKIPVGFSTDVNAAALGEFLFGE-------------AKGLDSCLYITIGTGIGAGAIVEGRLLQGLS--HPEMGHIYIR---R-------H-P-------------DD----VY-QG-----KCPYH-GDCFE----GLAS------------G---------P--------AI-------------E---------------ARW-G---KK------A---------ADL-SDIAQVWELEGYYIAQALAQYILILAPKKIILGGGVM-Q--QKQVFSYIYQYVPKIMNSYLDFSELSD----DISDYIV-PPRLGSNAGIIG------TLVLAHQALQAEAAS-----