@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0113: (2016-03-12 )
LYEKLVNKYQDEVTIREEKMPYKLPGLYLNGMIFISKDQSSIEKGCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREYFEVAEFLEVTEEFLRHTVSHYAEKYGPMYDYGGYFINFGNSIDVYKKF
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10-.-.......20........--30----------.........40........50........60...--.-.----...70.-.----......80----......-------..90....-..---..100.......110--.......--.120.-----......130.......140.......150---------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
E
K
L
V
N
K
Y
QD-E-
V
T
I
REEKMPYKLP
G
L
Y
L--N-----------
G
M
I
F
I
SK
D
Q
S
S
I
E
K
G
C
V
L
V
E
E
L
M
H
Y
K
YTVGNI
T
K
--
Q
-
E
----
T
I
M
D
K
K
-
Q
----
E
I
F
A
R
RK
G
----
Y
E
ELI
P
-------
L
D
D
I
I
A
C
F
-
Y
L
---
G
L
R
E
Y
F
E
V
A
E
F
L
E
V
---
T
E
E
F
L
R
H
--
T
V
S
H
Y
-----
A
E
K
YGPMYDYG
G
Y
F
I
NFGNSI
D
V
YKKF-----------------------------------------------------------------------------------------------------------------------------------
54
Fugue
71.55
22%
-34
- C3 -
4D0L
2
PI4KB_HUMAN
A:
[10-566]
------------------------------------------------------------------------------------------------S
W
L
L
R
L
F
E
SKLFD
I
S
M
A
I
S
Y
L
Y
N
SKE
P
G
V
Q
A
Y
I
G
N
R
L
FCFR
N
E
D
V
D
F
Y
L
P
Q
L
L
N
M
Y
I
HMD
E
D
V
G
D
A
I
K
P
Y
I
V
H
R
C
R
Q
S
I
N
F
S
L
Q
C
A
L
L
L
G
A
Y
S
SR
G
T
K
L
R
K
L
I
L
SRL
A
P
E
R
E
F
I
K
S
L
M
A
I
G
K
R
L
ATLPT
K
E
Q
K
T
Q
R
L
I
S
E
L
S
L
L
N
H
K
LPARVWLPTAG
F
D
H
H
V
V
RVPHTQAVVLNSKDK
A
P
Y
L
I
Y
V
E
V
L
E
C
ENFDTTSV
P
A
R
I
PENPSAVALKEP
W
Q
E
K
V
R
R
I
R
E
G
SPYGHLPN
W
R
L
L
S
V
I
V
K
CGDDL
R
Q
E
L
L
A
F
Q
V
L
K
Q
L
Q
S
I
W
E
Q
E
R
V
-
P
-
L
W
I
K
----
P
Y
K
---------------------
I
L
V
I
S
A
D
S
G
M
I
E
--------------
P
V
V
N
A
V
S
--
I
-
H
----
Q
V
K
K
Q
S
-
Q
LS
L
L
D
Y
F
L
Q
E
H
G
----
S
Y
T
T
E
A
-------
F
L
S
A
Q
R
N
F
-
V
Q
---
S
C
A
G
Y
C
L
V
C
Y
L
L
Q
V
---
K
D
---
R
H
--
N
G
N
I
L
-----
L
D
A
E
G
H
I
I
H
-----
I
D
F
G
F
I
L
S
S
S
S
A
F
KLT
T
E
F
V
D
V
M
GGLDG
D
M
F
N
Y
Y
K
M
L
M
L
Q
G
L
I
A
A
R
K
H
M
D
K
V
V
Q
I
V
E
I
M
Q
QGSQLPCFHGSS
T
I
R
N
L
K
E
R
F
HMSMT
E
E
Q
L
Q
L
L
V
E
Q
M
V
D
G
S
M
RS----------------------------------------
52
Fugue
66.98
16%
-34
* C4 *
2L3L
-
TBCC_HUMAN
A:
[25-135]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
E
R
L
Q
R
R
E
Q
E
-
R
-
Q
L
E
V
E
R
R
K
Q
K
R
-------------------------
Q
N
Q
E
V
E
K
E
N
S
H
F
F
V
A
T
F
A
R
E
R
A
A
V
E
E
L
L
E
--
R
-
A
----
E
S
V
E
R
L
-
E
----
E
A
A
S
R
L
Q
G
----
L
Q
K
L
I
N
-------
D
S
V
----
F
-
F
L
---
A
A
Y
D
L
R
Q
G
Q
E
A
L
A
R
---
L
Q
A
A
L
A
E
--
R
R
R
G
L
-----
Q
P
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
66.59
32%
-93
- C5 -
3UOA
2
C:
[25-107]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-------
L
V
D
V
Y
E
L
T
-
N
L
---
L
R
Q
L
D
F
K
V
V
S
L
L
D
L
---
T
E
Y
E
M
R
N
--
A
V
D
E
F
LLLLD
K
G
V
Y
G
L
L
Y
Y
A
G
H
G
Y
E
N
F
G
N
S
F
M
V
---------------------------------------------------------------------------------------------------------------------------------------
55
Fugue
66.26
16%
-32
- C4 -
4I17
4
?
A:
[4-226]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT
D
P
N
Q
L
K
N
E
G
N
D
-
A
-
L
N
A
K
N
Y
A
V
A
F
E
K
Y
S
E
Y
L
--
K
L
T
NNQD
S
V
T
A
Y
N
C
G
V
C
A
D
N
I
K
K
Y
K
E
A
A
D
Y
F
D
I
A
I
K
K
N
Y
N
L
A
N
A
Y
I
--
G
-
K
----
S
A
A
Y
R
D
M
K
----
N
N
Q
E
Y
I
A
T
----
L
T
E
G
I
K
A
VPGN
A
T
I
E
K
L
Y
A
I
Y
-
Y
L
---
K
E
G
Q
K
F
Q
Q
A
G
N
I
E
K
---
A
E
E
N
Y
K
H
A
T
D
V
T
S
K
-----
K
W
K
T
D
A
L
Y
S
L
G
V
L
F
Y
N
N
G
A
D
V
L
R
K
A
T
P
LASSN
K
E
K
Y
A
S
E
K
A
K
A
D
A
A
F
K
K
A
V
D
Y
L
G
E
A
V
T
L
S
PNR
T
E
I
K
Q
M
Q
D
Q
V
K
A
M
I--------------------------------------------------------------------------------
23
PsiBlast_CBE
65.81
32%
-94
- C5 -
3UO8
1
C:
[25-107]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-------
L
V
D
V
Y
E
L
T
-
N
L
---
L
R
Q
L
D
F
K
V
V
S
L
L
D
L
---
T
E
Y
E
M
R
N
--
A
V
D
E
F
LLLLD
K
G
V
Y
G
L
L
Y
Y
A
G
H
G
Y
E
N
F
G
N
S
F
M
V
---------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
65.41
24%
-112
- C5 -
2WZF
-
?
A:
[343-400]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
R
-
K
----
S
I
F
D
L
R
K
G
----
L
Q
D
A
F
R
-------
S
D
S
L
L
Q
L
Y
D
F
L
---
G
A
D
K
F
K
E
V
F
K
L
K
E
A
---
Q
S
K
Y
I
N
E
--
H
I
S
E
F
-----
S
E
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------
51
Fugue
64.85
17%
-23
* C3 *
4BZF
3
GALM_BACSU
A:
[1-322]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
N
F
I
E
K
I
T
Y
LG
T
P
A
I
K
A
G
N
EH
L
E
M
I
V
V
PEWGSNVISLVDKTTNVQL
L
R
E
P
ET
A
E
S
F
H
D
T
PTLY
G
I
P
I
L
FPPNRISDG
T
F
S
F
RG
R
T
Y
H
F
D
INEKDKHNH
L
H
G
F
L
Y
H
E
K
W
N
-
V
-
V
T
T
K
Q
T
D
-----
E
G
V
I
V
--
E
-----------
T
E
I
D
L
S
E
L
P
H
V
Q
K
Q
F
P
H
H
A
V
V
R
M
T
Y
T
I
K
E
N
T
L
F
K
--
H
-
A
----
T
V
M
N
K
G
-
K
----
E
A
F
P
W
G
I
G
----
Y
H
T
T
F
I
-------
F
P
A
E
S
S
L
F
-
S
L
---
T
A
D
Q
Q
W
E
L
D
E
R
L
L
P
---
T
G
K
L
M
D
V
--
P
Y
K
E
A
-----
L
H
E
G
M
D
L
R
H
K
Q
L
D
D
V
F
L
S
S
----
Y
Q
K
R
G
G
E
N
Q
A
V
I
Y
H
QHAH
I
S
I
I
Y
K
A
D
EQFK
H
W
V
V
Y
NADGKQGYLCPEPYTWVTNAVNLDLPSSLTG
L
Q
V
L
E
PG
E
E
T
T
A
K
S
S
I
T
I
E
L
N------------------------------------------------
58
Fugue
64.60
14%
-77
- C4 -
1FS1
-
?
B:
[2-140]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
I
K
L
Q
S
S
D
G
E
-
I
-
F
E
V
D
V
E
I
A
K
Q
----------------------
S
V
T
I
K
T
M
L
E
D
L
G
M
D
P
V
P
L
P
N
V
--------------
N
-
A
----
A
I
L
K
K
V
-
I
----
Q
W
C
T
H
H
K
D
DP
V
W
D
Q
E
F
L
K
-------
V
D
Q
G
T
L
F
E
-
L
I
---
L
A
A
N
Y
L
D
I
K
G
L
L
D
V
---
T
C
K
T
V
A
N
--
M
I
K
------------------------
G
K
T
P
E
E
I
R
K
T
F
N---------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
63.89
32%
-91
- C5 -
4I1P
5
C:
[25-89]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-------
L
V
D
V
Y
E
L
T
-
N
L
---
L
R
Q
L
D
F
K
V
V
S
L
L
D
L
---
T
E
Y
E
M
R
N
--
A
V
D
E
F
LLLLD
K
G
V
Y
G
L
L
Y
Y
A
G
H
G
Y
E
N
F
G
N
S
F
M
V
---------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
62.90
32%
-101
- C5 -
3V4O
1
A:
[38-99]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-------
L
V
D
V
Y
E
L
T
-
N
L
---
L
R
Q
L
D
F
K
V
V
S
L
L
D
L
---
T
E
Y
E
M
R
N
--
A
V
D
E
F
L
L
L
LD
K
G
V
Y
G
L
L
Y
Y
A
G
H
G
Y
E
N
F
G
N
S
------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
62.80
32%
-96
- C5 -
3UOA
1
MALT1_HUMAN
B:
[25-100]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-------
L
V
D
V
Y
E
L
T
-
N
L
---
L
R
Q
L
D
F
K
V
V
S
L
L
D
L
---
T
E
Y
E
M
R
N
--
A
V
D
E
F
L
L
L
LD
K
G
V
Y
G
L
L
Y
Y
A
G
H
G
Y
E
N
F
G
N
S
------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
62.33
32%
-99
- C5 -
3UO8
1
MALT1_HUMAN
B:
[25-100]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-------
L
V
D
V
Y
E
L
T
-
N
L
---
L
R
Q
L
D
F
K
V
V
S
L
L
D
L
---
T
E
Y
E
M
R
N
--
A
V
D
E
F
L
L
L
LD
K
G
V
Y
G
L
L
Y
Y
A
G
H
G
Y
E
N
F
G
N
S
------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
61.70
32%
-88
- C5 -
4I1R
1
A:
[25-116]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-------
L
V
D
V
Y
E
L
T
-
N
L
---
L
R
Q
L
D
F
K
V
V
S
L
L
D
L
---
T
E
Y
E
M
R
N
--
A
V
D
E
F
L
L
L
LD
K
G
V
Y
G
L
L
Y
Y
A
G
H
G
Y
E
N
F
G
N
S
------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
61.63
32%
-98
- C5 -
4I1P
3
MALT1_HUMAN
A:
[25-86]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-------
L
V
D
V
Y
E
L
T
-
N
L
---
L
R
Q
L
D
F
K
V
V
S
L
L
D
L
---
T
E
Y
E
M
R
N
--
A
V
D
E
F
L
L
L
LD
K
G
V
Y
G
L
L
Y
Y
A
G
H
G
Y
E
N
F
G
N
S
------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
60.74
32%
-92
- C5 -
3V55
-
MALT1_HUMAN
A:
[362-438]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-------
L
V
D
V
Y
E
L
T
-
N
L
---
L
R
Q
L
D
F
K
V
V
S
L
L
D
L
---
T
E
Y
E
M
R
N
--
A
V
D
E
F
L
L
L
LD
K
G
V
Y
G
L
L
Y
Y
A
G
H
G
Y
E
N
F
G
N
S
------------------------------------------------------------------------------------------------------------------------------------------
56
Fugue
55.54
17%
-38
- C1 -
5CA8
2
?
A:
[27-687]
DAIQIIDENKHFNTG
I
L
D
Y
I
N
K
T
S
PADVGNN
Y
H
I
I
S
V
F
G
S
Q
STG
K
S
T
L
L
N
R
L
FNTNFDVMG
I
W
L
A
Y
S
P
V
V
S
T
TL
G
H
T
T
S
KS
N
I
L
V
M
D
V
E
GTDED
Q
D
F
E
R
K
A
A
L
F
A
L
S
T
SE
V
L
I
I
N
I
W
E
TQVGLYQGANM
G
L
L
K
T
V
F
E
V
N
L
S
L
F
G
K
S
K
L
E
THND
H
K
V
L
L
L
I
V
I
R
DHVGVTP
V
E
S
L
A
K
T
F
T
L
D
L
Q
N
M
W
S
S
LAKPAELEHLQ
F
A
D
F
F
D
V
T
F
H
A
L
N
HKVLQ
P
K
E
F
G
E
G
I
N
R
L
G
D
R
L
VVSNELFKPEYHHDVPIDG
W
T
M
Y
A
E
R
C
W
E
Q
I
E
T
NKDLD
L
P
T
Q
Q
I
L
V
A
Q
F
K
C
D
E
I
V
E
S
V
F
Q
E
F
L
T
K
Y
Q
H
H
FKEVDAAPDFEEL
G
A
L
F
A
D
L
R
Q
D
A
F
E
D
Y
D
A
S
ASRYN
K
A
V
Y
E
Q
K
R
K
K
L
R
W
L
I
N
D
K
L
K
E
V
F
D
V
H
A
K
N
-
L
-
C
N
T
L
L
E
K
F
E
K
D
L
V
A
L
----
K
-----------
G
K
D
F
A
V
N
V
K
T
L
S
T
K
L
V
E
D
V
N
F
Q
V
S
L
M
S
L
Q
G
D
L
S
L
--
D
-
E
----
I
I
L
A
L
T
-
K
----
D
I
D
A
I
-
V
A
----
K
Q
Q
V
V
E
-------
L
N
S
I
V
N
K
S
-
V
K
---
K
L
S
A
S
L
S
K
S
I
Q
F
E
L
G
DP
N
E
E
T
W
D
N
--
V
L
Q
Q
F
-----
K
G
V
Y
E
K
F
G
G
D
F
G
L
G
T
S
S
T
Q
N
Q
Q
A
I
E
K
F
K
F
K
S
W
C
Q
F
Y
D
V
T
H
K
L
I
S
R
E
K
L
L
A
L
L
Q
D
R
F
D
D
K
FRYDENG
L
P
K
L
Y
LN
E
Q
D
L
E
K
T
F
A
V
A
K
Q
H
A
L
Q
VLPILT
F
A
K
L
ADGSEIVPDYDIFDSKLREQFLDHCFAEIIT
E
Q
E
K
L
E
V
L
A
K
F
K
K
E
V
D
A
K
Y
I
E
T
K
R
S
I
V
2
PsiBlast_PDB
55.03
29%
-27
- C6 -
3E5T
-
RFP_ENTQU
A:
[96-161]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
--
D
-----------
G
G
V
F
T
V
M
Q
D
T
S
L
E
D
G
C
L
V
Y
----
H
A
K
V
T
G
T
N
F
P
S
--
N
-
G
----
A
V
M
Q
K
K
-
T
----------
K
G
----
W
E
---
P
-------
N
T
E
M
L
Y
P
A
-
D
G
---
G
L
R
G
Y
S
Q
M
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
54.20
29%
-19
* C6 *
1UIS
-
RFP_ENTQU
A:
[96-161]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
--
D
-----------
G
G
V
F
T
V
M
Q
D
T
S
L
E
D
G
C
L
V
Y
----
H
A
K
V
T
G
V
N
F
P
S
--
N
-
G
----
A
V
M
Q
K
K
-
T
----------
K
G
----
W
E
---
P
-------
N
T
E
M
L
Y
P
A
-
D
G
---
G
L
R
G
Y
S
Q
M
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
53.60
29%
-27
- C6 -
3E5W
-
RFP_ENTQU
A:
[96-161]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
--
D
-----------
G
G
V
F
T
V
M
Q
D
T
S
L
E
D
G
C
L
V
Y
----
H
A
K
V
T
G
V
N
F
P
S
--
N
-
G
----
A
V
M
Q
K
K
-
T
----------
K
G
----
W
E
---
P
-------
S
T
E
M
L
Y
P
A
-
D
G
---
G
L
R
G
Y
C
Q
M
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
51.56
14%
16
- C5 -
3DTE
-
IRRE_DEIDV
A:
[34-176]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
H
S
L
M
H
G
L
D
G
I
T
L
T
F
M
P
M
G
-
Q
R
D
G
A
Y
D
PE
H
-----------
H
V
I
L
I
N
S
Q
V
R
P
E
R
Q
R
F
T
L
A
H
E
I
S
H
A
L
L
L
G
D
D
D
L
L
S
D
L
H
D
E
YEG
D
R
L
E
Q
V
-
I
----
E
T
L
C
N
V
G
A
----
A
A
L
L
M
P
-------
A
E
L
I
D
D
L
L
-
T
R
FGP
T
G
R
A
L
A
E
L
A
R
R
A
D
V
---
S
A
T
S
A
L
Y
--
A
L
A
E
R
-----
T
A
------------------------------------------------------------------------------------------------------------------------------------------------------------